mRNA_L-elsbetiae_contig1253.2049.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1253.2049.1
Unique NamemRNA_L-elsbetiae_contig1253.2049.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1253.2049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1253contigL-elsbetiae_contig1253:21057..22029 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size378
Cds size303
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1253.2049.1prot_L-elsbetiae_contig1253.2049.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1253 21131..22029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.2694843-UTR-L-elsbetiae_contig1253:21056..211301622815446.2694843-UTR-L-elsbetiae_contig1253:21056..21130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1253 21057..21130 -
1691682902.0205142-UTR-L-elsbetiae_contig1253:21056..211301691682902.0205142-UTR-L-elsbetiae_contig1253:21056..21130Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1253 21057..21130 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.2800317-CDS-L-elsbetiae_contig1253:21130..213551622815446.2800317-CDS-L-elsbetiae_contig1253:21130..21355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1253 21131..21355 -
1691682902.0290494-CDS-L-elsbetiae_contig1253:21130..213551691682902.0290494-CDS-L-elsbetiae_contig1253:21130..21355Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1253 21131..21355 -
1622815446.2892885-CDS-L-elsbetiae_contig1253:21951..220291622815446.2892885-CDS-L-elsbetiae_contig1253:21951..22029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1253 21952..22029 -
1691682902.036884-CDS-L-elsbetiae_contig1253:21951..220291691682902.036884-CDS-L-elsbetiae_contig1253:21951..22029Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1253 21952..22029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1253.2049.1

>prot_L-elsbetiae_contig1253.2049.1 ID=prot_L-elsbetiae_contig1253.2049.1|Name=mRNA_L-elsbetiae_contig1253.2049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=101bp
TETRRGSQGGGRDGGGSGGTAADDDKEHQAVEVERGSVQQRHRSNPCRLF
VLQQNDSSDDDEHPAESFESKTALHHSLGDRLVGSKLFLPPVPAFPRVCC
*
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mRNA from alignment at L-elsbetiae_contig1253:21057..22029-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1253.2049.1 ID=mRNA_L-elsbetiae_contig1253.2049.1|Name=mRNA_L-elsbetiae_contig1253.2049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=973bp|location=Sequence derived from alignment at L-elsbetiae_contig1253:21057..22029- (Laminarionema elsbetiae ELsaHSoW15)
ACTGAAACCAGGCGGGGTAGCCAAGGAGGGGGCAGGGACGGCGGCGGAAG
CGGCGGCACGGCGGCCGACGATGATAAGGTGTGTGAAGCGTTGCGTAGTT
CGGTCGAGTCCTGCGAAGCGGTGTCTAGGCGCCGTGCCGGTATTTTGCTC
CCGATGTTTTGGTTTGTACTGCATAGACTGGAGCGATGTGGAGCTTTCCC
TGCCCCGCCGCAGGCGTACTGGTCTTCGTATCACCATTTTCCCAGTCCCA
CACGCCCCGGTGGTCTAGTTGGTATCCCCGAACATCTTCTAGCAGGCAGA
TCACGGTTTCGATTCCCGGCGGGAGCGAATTTTTCTCGCCAAAAGTGAGT
TTTTTCTCAAAGTGATTTTTTTTCTCTTGCTTTCGTTCCTGTCAGTGGAT
AACGCTTAGCGTGGGTACACAAACCTCGACCTCACCGTGGATGAGGGAAA
GGGGCGGCTAAACCCTAATCGCGACCAAAATCTTAGGCAGGCACCGCAGT
AGGTGGGGATGAAGGCCTCGGGGAGAGGAACCCTTCTGTGTGCCCACGGT
TCAGTACTCTGGCAAGACACTCGTGGCAGGGGGCCCACTGAAAATATGTG
AAGAATAATAAAAATAAAAATAACTAAAACTCAATTGTCTATTGATGTAT
GATGCCACATTGCTGCAATTTAAGGAACACCAAGCCGTCGAGGTTGAGAG
GGGGAGCGTCCAGCAGCGACATCGCTCCAATCCCTGCCGCCTCTTTGTTC
TCCAGCAGAACGACAGCTCTGATGACGACGAACATCCGGCGGAAAGTTTC
GAGTCGAAAACAGCTCTACACCACAGCTTGGGCGACCGCTTGGTAGGTTC
GAAATTATTTTTACCTCCGGTGCCAGCTTTTCCCCGGGTTTGTTGTTAAA
TAGTCGTTATTTTGTGGCTGGAGACTGGATATGGAATGGATACCTCTGGT
GGTGTGGTGATTTTTGTTTTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1253:21057..22029-

>mRNA_L-elsbetiae_contig1253.2049.1 ID=mRNA_L-elsbetiae_contig1253.2049.1|Name=mRNA_L-elsbetiae_contig1253.2049.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=606bp|location=Sequence derived from alignment at L-elsbetiae_contig1253:21057..22029- (Laminarionema elsbetiae ELsaHSoW15)
ACTGAAACCAGGCGGGGTAGCCAAGGAGGGGGCAGGGACGGCGGCGGAAG
CGGCGGCACGGCGGCCGACGATGATAAGACTGAAACCAGGCGGGGTAGCC
AAGGAGGGGGCAGGGACGGCGGCGGAAGCGGCGGCACGGCGGCCGACGAT
GATAAGGAACACCAAGCCGTCGAGGTTGAGAGGGGGAGCGTCCAGCAGCG
ACATCGCTCCAATCCCTGCCGCCTCTTTGTTCTCCAGCAGAACGACAGCT
CTGATGACGACGAACATCCGGCGGAAAGTTTCGAGTCGAAAACAGCTCTA
CACCACAGCTTGGGCGACCGCTTGGTAGGTTCGAAATTATTTTTACCTCC
GGTGCCAGCTTTTCCCCGGGTTTGTTGTTAAGAACACCAAGCCGTCGAGG
TTGAGAGGGGGAGCGTCCAGCAGCGACATCGCTCCAATCCCTGCCGCCTC
TTTGTTCTCCAGCAGAACGACAGCTCTGATGACGACGAACATCCGGCGGA
AAGTTTCGAGTCGAAAACAGCTCTACACCACAGCTTGGGCGACCGCTTGG
TAGGTTCGAAATTATTTTTACCTCCGGTGCCAGCTTTTCCCCGGGTTTGT
TGTTAA
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