mRNA_L-elsbetiae_contig12529.2045.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12529.2045.1
Unique NamemRNA_L-elsbetiae_contig12529.2045.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A6H5KXN2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXN2_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 4.930e-41
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = 1
Query:    1 TYVGCFKDEKGDRDMLLVK---SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCTERCRGDEDQVCGAHNVNSVY 255
            TYVGCF+D+KGDRD+LLV    S  LTPA CAAYC  VEGA Y GVQ+GRKC+CGDSFG+HG+STLC+E C GDEDQVCGAHNVNSVY
Sbjct:  177 TYVGCFQDKKGDRDLLLVPKVVSSYLTPAACAAYCSSVEGATYIGVQSGRKCFCGDSFGKHGQSTLCSEPCYGDEDQVCGAHNVNSVY 264          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: D8LG92_ECTSI (F5/8 type C domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG92_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 5.070e-39
Identity = 67/89 (75.28%), Postives = 75/89 (84.27%), Query Frame = 1
Query:    1 TYVGCFKDEKGDRDMLLVK---SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCTERCRGDEDQVCGAHNVNSVYT 258
            TYVGCF+D+K DRD+LLV    S  LTPA CAAYC  VEGA Y GVQ+GRKC+CGDSFG+HG+STLC+E C GDEDQVCGAHNVNSVYT
Sbjct:  681 TYVGCFEDKKDDRDLLLVPKVVSSYLTPAACAAYCSSVEGATYIGVQSGRKCFCGDSFGKHGQSTLCSEPCYGDEDQVCGAHNVNSVYT 769          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A267G580_9PLAT (Uncharacterized protein n=5 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267G580_9PLAT)

HSP 1 Score: 80.9 bits (198), Expect = 6.560e-16
Identity = 39/87 (44.83%), Postives = 56/87 (64.37%), Query Frame = 1
Query:    1 TYVGCFKDEKGDRDML-LVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGESTLCTERCRGDEDQVCGAHNVNSVYT 258
            T VGC+ + + DRD+  LV + ++T  +CA  C      KY  +QAG +C+CGDS+G+HG ST C  RCRG+  Q+CG  +  +VYT
Sbjct:  914 TEVGCYNNNENDRDLPDLVFTGSVTIQMCAKMCAE-RFYKYAALQAGVQCFCGDSYGKHGASTECNLRCRGNAQQICGGKSSITVYT 999          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A267G318_9PLAT (WSC domain-containing protein (Fragment) n=3 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267G318_9PLAT)

HSP 1 Score: 74.3 bits (181), Expect = 5.990e-15
Identity = 36/92 (39.13%), Postives = 54/92 (58.70%), Query Frame = 1
Query:    4 YVGCFKDEKGDRDM-LLVKSDALTPA-----VCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHG--ESTLCTERCRGDEDQVCGAHNVNSVY 255
            Y+GC++D++G  D+  L   D L        +C   C    G +YFG+Q G  C+CGDS+GR+G  + + C + CRG  +++CG   VNSVY
Sbjct:   55 YIGCYQDKEGSPDLERLAGGDGLGTGRVNRKLCDFLCRG-SGNRYFGLQGGGSCFCGDSYGRYGSVDESSCDQNCRGYAEEICGGEGVNSVY 145          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: K1Q6F9_CRAGI (Protein xylosyltransferase n=3 Tax=Crassostrea gigas TaxID=29159 RepID=K1Q6F9_CRAGI)

HSP 1 Score: 75.1 bits (183), Expect = 6.920e-14
Identity = 36/88 (40.91%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    4 YVGCFKDEKGDRDMLLVKSDALT--PAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGES-TLCTERCRGDEDQVCGAHNVNSVYT 258
            Y GC+ D+  DRDM   K+         C  YCL + G +Y G+Q GR+C+CG+SFG+HG +   C +RC G+  + CG +  N VY+
Sbjct:  126 YYGCYLDDAEDRDMTHQKTLPTENWSQTCIDYCLQI-GFRYAGLQYGRECWCGNSFGKHGTTGAACNQRCPGNSKEFCGGYLTNDVYS 212          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: T1FZB5_HELRO (WSC domain-containing protein n=1 Tax=Helobdella robusta TaxID=6412 RepID=T1FZB5_HELRO)

HSP 1 Score: 69.7 bits (169), Expect = 1.380e-13
Identity = 35/91 (38.46%), Postives = 54/91 (59.34%), Query Frame = 1
Query:    4 YVGCFKD--EKGDRDMLLVKSD--ALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGES--TLCTERCRGDEDQVCGAHNVNSVYT 258
            Y+GC+ D     D+D+ L  ++  A+T   C  YCL  +   Y G+QAGR CYCG+S+G+HG++  + C  +C G   + CG    NS+Y+
Sbjct:   13 YLGCYNDVDAASDKDLNLANTNQPAMTIESCITYCLQNDYL-YAGLQAGRNCYCGNSYGKHGKALDSDCNSKCAGSITETCGGTLKNSIYS 102          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: UPI00148A1B09 (xylosyltransferase sqv-6-like isoform X1 n=2 Tax=Crassostrea gigas TaxID=29159 RepID=UPI00148A1B09)

HSP 1 Score: 71.2 bits (173), Expect = 3.010e-13
Identity = 35/89 (39.33%), Postives = 58/89 (65.17%), Query Frame = 1
Query:    4 YVGCFKDEKGDRDML---LVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGES-TLCTERCRGDEDQVCGAHNVNSVYT 258
            Y GC+ D + DRD+     ++++  + A C  YCL + G +Y G+Q GR+C+CG+SFG+HG +  +C +RC G+ ++ CG +  N VY+
Sbjct:  110 YYGCYLDAE-DRDLTHRKTLRTENWSQA-CIDYCLQI-GFRYAGLQYGRECWCGNSFGKHGTTGAVCNQRCPGNSNEFCGGYFTNDVYS 195          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A1I8GNZ8_9PLAT (WSC domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8GNZ8_9PLAT)

HSP 1 Score: 69.3 bits (168), Expect = 1.740e-12
Identity = 30/74 (40.54%), Postives = 48/74 (64.86%), Query Frame = 1
Query:   40 DMLLVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCTERCRGDEDQVCGAHNVNSVY 255
            D  L+ S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C  +C+G+ +Q+CG   +NSV+
Sbjct:   59 DGALMYSPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICGGFTINSVF 131          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A1I8I836_9PLAT (WSC domain-containing protein n=1 Tax=Macrostomum lignano TaxID=282301 RepID=A0A1I8I836_9PLAT)

HSP 1 Score: 67.4 bits (163), Expect = 2.990e-12
Identity = 28/68 (41.18%), Postives = 45/68 (66.18%), Query Frame = 1
Query:   58 SDALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGE--STLCTERCRGDEDQVCGAHNVNSVY 255
            S  +T  VC+ +C  + G  YFGVQ G++C+CG S+G HG+   + C  +C+G+ +Q+CG   +NSV+
Sbjct:    3 SPDMTLGVCSNFC-SLFGFPYFGVQVGKQCFCGSSYGLHGQLSDSKCNSQCKGNPEQICGGFTINSVF 69          
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Match: A0A267FWA7_9PLAT (WSC domain-containing protein n=2 Tax=Macrostomum lignano TaxID=282301 RepID=A0A267FWA7_9PLAT)

HSP 1 Score: 67.0 bits (162), Expect = 3.880e-12
Identity = 35/85 (41.18%), Postives = 47/85 (55.29%), Query Frame = 1
Query:   10 GCFKDEKGDRDMLLVKS--DALTPAVCAAYCLPVEGAKYFGVQAGRKCYCGDSFGRHGEST-LCTERCRGDEDQVCGAHNVNSVY 255
            GCF D    RD+       + +   +CA  C   +  KY G+Q G  C+CG+SFG HGES   C  RC G++D++CG    NSVY
Sbjct:   59 GCFIDNSDMRDLPTFAGYDEKMDVGLCAQRCQKWK-KKYLGLQEGSSCWCGNSFGAHGESADSCQTRCLGNDDEMCGGKLFNSVY 142          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12529.2045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KXN2_9PHAE4.930e-4176.14Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG92_ECTSI5.070e-3975.28F5/8 type C domain protein n=1 Tax=Ectocarpus sili... [more]
A0A267G580_9PLAT6.560e-1644.83Uncharacterized protein n=5 Tax=Macrostomum lignan... [more]
A0A267G318_9PLAT5.990e-1539.13WSC domain-containing protein (Fragment) n=3 Tax=M... [more]
K1Q6F9_CRAGI6.920e-1440.91Protein xylosyltransferase n=3 Tax=Crassostrea gig... [more]
T1FZB5_HELRO1.380e-1338.46WSC domain-containing protein n=1 Tax=Helobdella r... [more]
UPI00148A1B093.010e-1339.33xylosyltransferase sqv-6-like isoform X1 n=2 Tax=C... [more]
A0A1I8GNZ8_9PLAT1.740e-1240.54WSC domain-containing protein n=2 Tax=Macrostomum ... [more]
A0A1I8I836_9PLAT2.990e-1241.18WSC domain-containing protein n=1 Tax=Macrostomum ... [more]
A0A267FWA7_9PLAT3.880e-1241.18WSC domain-containing protein n=2 Tax=Macrostomum ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12529contigL-elsbetiae_contig12529:4460..5490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.0
Seed ortholog evalue1.2e-12
Seed eggNOG ortholog2880.D7FTD7
KEGG rclassRC00467
KEGG koko:K15920
KEGG ReactionR01433
KEGG Pathwayko00520,ko01100,map00520,map01100
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein xylosyltransferase activity
EggNOG OGsKOG4157@1,KOG4157@2759
EC3.2.1.37
COG Functional cat.U
CAZyGH3
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons2
Model size258
Cds size258
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.2202458-CDS-L-elsbetiae_contig12529:4459..45101622815446.2202458-CDS-L-elsbetiae_contig12529:4459..4510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12529 4460..4510 +
1691682902.001702-CDS-L-elsbetiae_contig12529:4459..45101691682902.001702-CDS-L-elsbetiae_contig12529:4459..4510Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12529 4460..4510 +
1622815446.232121-CDS-L-elsbetiae_contig12529:5283..54901622815446.232121-CDS-L-elsbetiae_contig12529:5283..5490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12529 5284..5490 +
1691682902.0123234-CDS-L-elsbetiae_contig12529:5283..54901691682902.0123234-CDS-L-elsbetiae_contig12529:5283..5490Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12529 5284..5490 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12529.2045.1prot_L-elsbetiae_contig12529.2045.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12529 4460..5490 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12529.2045.1

>prot_L-elsbetiae_contig12529.2045.1 ID=prot_L-elsbetiae_contig12529.2045.1|Name=mRNA_L-elsbetiae_contig12529.2045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
TYVGCFKDEKGDRDMLLVKSDALTPAVCAAYCLPVEGAKYFGVQAGRKCY
CGDSFGRHGESTLCTERCRGDEDQVCGAHNVNSVYT
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mRNA from alignment at L-elsbetiae_contig12529:4460..5490+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12529.2045.1 ID=mRNA_L-elsbetiae_contig12529.2045.1|Name=mRNA_L-elsbetiae_contig12529.2045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1031bp|location=Sequence derived from alignment at L-elsbetiae_contig12529:4460..5490+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTACGTCGGGTGCTTCAAGGACGAGAAAGGGGACCGCGACATGTTACT TGTGCCTAAGGTATGTATGTACGGTGCCGAAACCCACTCTGGACGATGAC GATACGCCCAGGATGGGTTTGTTGCTGCTCCTACTTTTGCAACTGCTGTT GTATCCACGCGTATGTATACATAAGATAGACCTCTCGTGTCCTTACAAAA GTAACTTGGAATGCTGCTGGTTGAAGCAGCGCATGCAGCAACAAAACCAG GGGGGCAATGTTCCACCGAGAAAAGTAGAAACAAATGTTTCCCGACTTTT CGCTGGGAATCCATCGGTCTGGCCAAAACGTTGACAATCAACTCAGGAAG CTAGCCGGGCACGCGGGCGGAACTACAGCAGCAGCCTTGTACAACTGGTT CCTGCTAGAGAGACTGCGCGGTGTAGAATAAGTCCACCGTAAACGCACCG AGTCACAAAACATCACCGAAACGTTTCTGCACAGCAGTAGTAGTCATTCT TTGAAGGTGTATCTACATAGGAGTGGTGCGAATAGGCTGAAGCGGCAGGC GATTGCGAGGCCTCTTCTTCCCCCTGTCAAGGCGTAGAATGAAGCAGCAG GCCAAGAAAACCTATACCGAGCCGTCGCTGGGGTTTCAAACAAGAAGAGG CGATTTATGGACGTTAACTTGGGCATGCAGTCTTATGTCTTATGTCTTTA GATACTGCTCTGAACCCTGGTCCTTTCTTGGCTTCGCTCATGCCCCTTTT TTCTGTTTTTCCCCGGGCGTTGGATGACAACAATGACAACAACGACAACG ACAACAACAACAACACTAATGCAGGTGAAGTCCGATGCTCTCACGCCGGC GGTGTGCGCGGCCTACTGCTTGCCGGTCGAGGGGGCCAAGTACTTCGGAG TGCAGGCCGGTCGCAAGTGCTACTGTGGCGACTCCTTCGGCAGGCACGGG GAGTCGACCCTGTGCACAGAGCGCTGCAGAGGCGACGAGGACCAGGTGTG CGGGGCGCACAACGTCAACAGCGTCTACACA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12529:4460..5490+

>mRNA_L-elsbetiae_contig12529.2045.1 ID=mRNA_L-elsbetiae_contig12529.2045.1|Name=mRNA_L-elsbetiae_contig12529.2045.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12529:4460..5490+ (Laminarionema elsbetiae ELsaHSoW15)
ACTTACGTCGGGTGCTTCAAGGACGAGAAAGGGGACCGCGACATGTTACT
TACTTACGTCGGGTGCTTCAAGGACGAGAAAGGGGACCGCGACATGTTAC
TTGTGAAGTCCGATGCTCTCACGCCGGCGGTGTGCGCGGCCTACTGCTTG
CCGGTCGAGGGGGCCAAGTACTTCGGAGTGCAGGCCGGTCGCAAGTGCTA
CTGTGGCGACTCCTTCGGCAGGCACGGGGAGTCGACCCTGTGCACAGAGC
GCTGCAGAGGCGACGAGGACCAGGTGTGCGGGGCGCACAACGTCAACAGC
GTCTACACAGTGAAGTCCGATGCTCTCACGCCGGCGGTGTGCGCGGCCTA
CTGCTTGCCGGTCGAGGGGGCCAAGTACTTCGGAGTGCAGGCCGGTCGCA
AGTGCTACTGTGGCGACTCCTTCGGCAGGCACGGGGAGTCGACCCTGTGC
ACAGAGCGCTGCAGAGGCGACGAGGACCAGGTGTGCGGGGCGCACAACGT
CAACAGCGTCTACACA
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