mRNA_L-elsbetiae_contig12525.2043.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12525.2043.1
Unique NamemRNA_L-elsbetiae_contig12525.2043.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12525.2043.1 vs. uniprot
Match: D8LMB0_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMB0_ECTSI)

HSP 1 Score: 60.1 bits (144), Expect = 4.340e-9
Identity = 44/113 (38.94%), Postives = 59/113 (52.21%), Query Frame = 2 
Query:    8 AGADGALADHEERLPVHYAAADPDPRLTDALLKSEPSTVNHLSKDGATPLYMASGYGNERVVSLLLSVGA----VQPRQGPYSVPHGAAKCPLGLAVSQLRFEVVRVLLDEGL 334
            AGAD AL D +  L +H+AAA  D ++   LL   PST+NH +  G TPL  A+  G E  + LLLS GA    V+  +G  +  HGA +          +   VR LL+ GL
Sbjct:   26 AGADPALEDEDGGLAIHFAAARCDTQVVQLLLSKAPSTLNHATHFGWTPLAAAADGGRESTMCLLLSAGASDSLVRATKGVTAF-HGAVRSG--------KIRSVRFLLENGL 129
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BLAST of mRNA_L-elsbetiae_contig12525.2043.1 vs. uniprot
Match: A0A897H4M4_PRIMG (Ankyrin repeat domain-containing protein n=7 Tax=Priestia TaxID=2800373 RepID=A0A897H4M4_PRIMG)

HSP 1 Score: 49.3 bits (116), Expect = 7.600e-5
Identity = 29/78 (37.18%), Postives = 43/78 (55.13%), Query Frame = 2 
Query:   98 LLKSEPSTVNHLSKDGATPLYMASGYGNERVVSLLLSVGAVQPRQGPYSVPHGAAKCPLGLAVSQLRFEVVRVLLDEG 331
            L+   P+ +N  + DG TPL++AS +G E  V LLLS+GA    +   S  +     PL  AV+  + +VV +LL  G
Sbjct:   22 LIGENPALINEFNLDGWTPLHLASYFGKEETVKLLLSLGANMKARAKNSNEN----MPLHAAVANKQTKVVEILLQGG 95
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12525.2043.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LMB0_ECTSI4.340e-938.94Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus si... [more]
A0A897H4M4_PRIMG7.600e-537.18Ankyrin repeat domain-containing protein n=7 Tax=P... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12525contigL-elsbetiae_contig12525:2217..2553 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815446.1157467-CDS-L-elsbetiae_contig12525:2216..25521622815446.1157467-CDS-L-elsbetiae_contig12525:2216..2552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12525 2217..2552 +
1691682901.9567723-CDS-L-elsbetiae_contig12525:2216..25521691682901.9567723-CDS-L-elsbetiae_contig12525:2216..2552Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12525 2217..2552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12525.2043.1prot_L-elsbetiae_contig12525.2043.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12525 2217..2552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12525.2043.1

>prot_L-elsbetiae_contig12525.2043.1 ID=prot_L-elsbetiae_contig12525.2043.1|Name=mRNA_L-elsbetiae_contig12525.2043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
LGGGGRRGPGRPRRAAARALRGGRPRPPPHGRAAEERAVHGEPPLQGRGD
PAVHGVGVREREGGLAAAVGGGRAAEAGALLCPPRGGQVPARPGRVPAPL
RGGQGPAGRGAG
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mRNA from alignment at L-elsbetiae_contig12525:2217..2553+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12525.2043.1 ID=mRNA_L-elsbetiae_contig12525.2043.1|Name=mRNA_L-elsbetiae_contig12525.2043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=337bp|location=Sequence derived from alignment at L-elsbetiae_contig12525:2217..2553+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGGGGCGGGGGCCGACGGGGCCCTGGCCGACCACGAAGAGCGGCTGC
CCGTGCACTACGCGGCGGCCGACCCAGACCCCCGCCTCACGGACGCGCTG
CTGAAGAGCGAGCCGTCCACGGTGAACCACCTCTCCAAGGACGGGGCGAC
CCCGCTGTACATGGCGTCGGGGTACGGGAACGAGAGGGTGGTCTCGCTGC
TGCTGTCGGTGGGGGCCGTGCAGCCGAGGCAGGGGCCCTACTCTGTCCCC
CACGGGGCGGCCAAGTGCCCGCTCGGCCTGGCCGTGTCCCAGCTCCGCTT
CGAGGTGGTCAGGGTCCTGCTGGACGAGGGGCTGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12525:2217..2553+

>mRNA_L-elsbetiae_contig12525.2043.1 ID=mRNA_L-elsbetiae_contig12525.2043.1|Name=mRNA_L-elsbetiae_contig12525.2043.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig12525:2217..2553+ (Laminarionema elsbetiae ELsaHSoW15)
CTTGGGGGCGGGGGCCGACGGGGCCCTGGCCGACCACGAAGAGCGGCTGC
CCGTGCACTACGCGGCGGCCGACCCAGACCCCCGCCTCACGGACGCGCTG
CTGAAGAGCGAGCCGTCCACGGTGAACCACCTCTCCAAGGACGGGGCGAC
CCCGCTGTACATGGCGTCGGGGTACGGGAACGAGAGGGTGGTCTCGCTGC
TGCTGTCGGTGGGGGCCGTGCAGCCGAGGCAGGGGCCCTACTCTGTCCCC
CACGGGGCGGCCAAGTGCCCGCTCGGCCTGGCCGTGTCCCAGCTCCGCTT
CGAGGTGGTCAGGGTCCTGCTGGACGAGGGGCTGGACTTGGGGGCGGGGG
CCGACGGGGCCCTGGCCGACCACGAAGAGCGGCTGCCCGTGCACTACGCG
GCGGCCGACCCAGACCCCCGCCTCACGGACGCGCTGCTGAAGAGCGAGCC
GTCCACGGTGAACCACCTCTCCAAGGACGGGGCGACCCCGCTGTACATGG
CGTCGGGGTACGGGAACGAGAGGGTGGTCTCGCTGCTGCTGTCGGTGGGG
GCCGTGCAGCCGAGGCAGGGGCCCTACTCTGTCCCCCACGGGGCGGCCAA
GTGCCCGCTCGGCCTGGCCGTGTCCCAGCTCCGCTTCGAGGTGGTCAGGG
TCCTGCTGGACGAGGGGCTGGA
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