mRNA_L-elsbetiae_contig12510.2040.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12510.2040.1
Unique NamemRNA_L-elsbetiae_contig12510.2040.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: D8LJR4_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJR4_ECTSI)

HSP 1 Score: 150 bits (380), Expect = 2.060e-45
Identity = 73/75 (97.33%), Postives = 75/75 (100.00%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNN 225
            A+SEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTH+TTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNN
Sbjct:   55 AKSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNN 129          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A835ZE28_9STRA (PH domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZE28_9STRA)

HSP 1 Score: 122 bits (307), Expect = 2.500e-34
Identity = 60/71 (84.51%), Postives = 64/71 (90.14%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQ 213
            A+SE   PHG IDLSSCMTVKSAEQKT KRNALEVST DTT+FM+A TEKEKDDWIGAIGRAIVQ+SSTYQ
Sbjct:   54 AKSEMAAPHGMIDLSSCMTVKSAEQKTHKRNALEVSTQDTTFFMFAGTEKEKDDWIGAIGRAIVQSSSTYQ 124          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: F0Y7C7_AURAN (PH domain-containing protein (Fragment) n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y7C7_AURAN)

HSP 1 Score: 109 bits (272), Expect = 1.900e-29
Identity = 53/71 (74.65%), Postives = 59/71 (83.10%), Query Frame = 1
Query:   10 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDN 222
            E   PHG IDL+SCMTVKSAE K  KRNALEVST DTTY M+A++EKEKDDWIGAIGRAIV+ SSTY  D+
Sbjct:   29 ESSVPHGMIDLASCMTVKSAEYKAHKRNALEVSTPDTTYLMFADSEKEKDDWIGAIGRAIVRCSSTYTNDD 99          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: W7TJA6_9STRA (Pleckstrin like protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TJA6_9STRA)

HSP 1 Score: 108 bits (271), Expect = 6.970e-29
Identity = 52/70 (74.29%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTY 210
            A++E  +PHG IDLSSCMTVKSAE K  KRNALEVST +TT+ MYA+TEKEKDDWIGA+GRAIV++S+TY
Sbjct:   50 AKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTY 119          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S2AKD7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2AKD7_9STRA)

HSP 1 Score: 108 bits (269), Expect = 1.910e-28
Identity = 51/70 (72.86%), Postives = 59/70 (84.29%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTY 210
            A+ E  TPHG +DL+ CMTVKSAE K  K+NALEVST DTT+ M+A+TEKEKDDWIGAIGRAIV+ SSTY
Sbjct:   67 AKGEAATPHGMVDLAQCMTVKSAETKAGKKNALEVSTADTTFLMFADTEKEKDDWIGAIGRAIVRCSSTY 136          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S2LSC0_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LSC0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 2.100e-27
Identity = 48/72 (66.67%), Postives = 59/72 (81.94%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQG 216
            A++    PHG IDLS+C TVKSA+ KT K N+ E+STHDTT+F+YA+ EKEKDDWIG +GRAIV+ SSTYQG
Sbjct:   55 AKTGTSAPHGMIDLSTCTTVKSADVKTRKNNSFEISTHDTTFFLYADNEKEKDDWIGNVGRAIVRCSSTYQG 126          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S1E2P5_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E2P5_9STRA)

HSP 1 Score: 103 bits (258), Expect = 3.850e-27
Identity = 45/70 (64.29%), Postives = 60/70 (85.71%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTY 210
            ++SEY+ PHG IDLS C TVKSA+ K+ KRN+ E+ST DTT+ +YA+TEKEKDDWIG++G++IV+ SSTY
Sbjct:    3 SKSEYQAPHGMIDLSQCTTVKSADLKSKKRNSFEISTPDTTFLLYADTEKEKDDWIGSVGKSIVRCSSTY 72          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S1G2Q7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1G2Q7_9STRA)

HSP 1 Score: 105 bits (261), Expect = 3.990e-27
Identity = 51/74 (68.92%), Postives = 63/74 (85.14%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHD-TTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGD 219
            A++E++ PHG IDL +C TVKSAE KT ++N+LEVST D +T++MYA TEKEKDDWIGAIGRAIV+ SSTYQ D
Sbjct:   60 AKNEWDRPHGMIDLRTCTTVKSAEMKTGRKNSLEVSTGDGSTFWMYAETEKEKDDWIGAIGRAIVRCSSTYQDD 133          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S2R6Y3_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R6Y3_9STRA)

HSP 1 Score: 101 bits (251), Expect = 1.140e-25
Identity = 46/75 (61.33%), Postives = 62/75 (82.67%), Query Frame = 1
Query:    1 AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDNN 225
            ++SE   PHG IDLS+C TVKSA+ K+ KRN+ E+ST +TT+ +YA++EKEKDDWIG+ GRAIV+ SST+QG+ N
Sbjct:   54 SKSERARPHGMIDLSTCTTVKSADLKSRKRNSFEISTPETTFLLYADSEKEKDDWIGSAGRAIVRCSSTFQGNTN 128          
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Match: A0A7S4A7D4_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A7D4_9STRA)

HSP 1 Score: 100 bits (249), Expect = 1.260e-25
Identity = 49/71 (69.01%), Postives = 57/71 (80.28%), Query Frame = 1
Query:   10 EYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEKEKDDWIGAIGRAIVQASSTYQGDN 222
            E   PHG IDL+ CMTVKSAE K  +R+ALEVST DTTY M A+TEKEKDDWIGAIGRAIV+ S+T+  D+
Sbjct:   52 EGSPPHGMIDLARCMTVKSAEFKARRRHALEVSTQDTTYLMCADTEKEKDDWIGAIGRAIVRCSATFTNDD 122          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12510.2040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJR4_ECTSI2.060e-4597.33PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A835ZE28_9STRA2.500e-3484.51PH domain-containing protein n=1 Tax=Tribonema min... [more]
F0Y7C7_AURAN1.900e-2974.65PH domain-containing protein (Fragment) n=1 Tax=Au... [more]
W7TJA6_9STRA6.970e-2974.29Pleckstrin like protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A7S2AKD7_9STRA1.910e-2872.86Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S2LSC0_9STRA2.100e-2766.67Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A7S1E2P5_9STRA3.850e-2764.29Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A7S1G2Q7_9STRA3.990e-2768.92Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S2R6Y3_9STRA1.140e-2561.33Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S4A7D4_9STRA1.260e-2569.01Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12510contigL-elsbetiae_contig12510:736..1676 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score152.5
Seed ortholog evalue7.7e-35
Seed eggNOG ortholog2880.D8LJR4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005543,GO:0008289,GO:0032266,GO:0035091,GO:0043167,GO:0043168,GO:1901981
EggNOG free text desc.phosphatidylinositol-3-phosphate binding
EggNOG OGs29TN5@1,2RXGP@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size225
Cds size225
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.3886206-CDS-L-elsbetiae_contig12510:735..8851622815445.3886206-CDS-L-elsbetiae_contig12510:735..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12510 736..885 +
1691682901.5052497-CDS-L-elsbetiae_contig12510:735..8851691682901.5052497-CDS-L-elsbetiae_contig12510:735..885Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12510 736..885 +
1622815445.4082868-CDS-L-elsbetiae_contig12510:1601..16761622815445.4082868-CDS-L-elsbetiae_contig12510:1601..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12510 1602..1676 +
1691682901.5157201-CDS-L-elsbetiae_contig12510:1601..16761691682901.5157201-CDS-L-elsbetiae_contig12510:1601..1676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12510 1602..1676 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12510.2040.1prot_L-elsbetiae_contig12510.2040.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12510 736..1676 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12510.2040.1

>prot_L-elsbetiae_contig12510.2040.1 ID=prot_L-elsbetiae_contig12510.2040.1|Name=mRNA_L-elsbetiae_contig12510.2040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=75bp
AQSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHDTTYFMYANTEK
EKDDWIGAIGRAIVQASSTYQGDNN
back to top

mRNA from alignment at L-elsbetiae_contig12510:736..1676+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12510.2040.1 ID=mRNA_L-elsbetiae_contig12510.2040.1|Name=mRNA_L-elsbetiae_contig12510.2040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=941bp|location=Sequence derived from alignment at L-elsbetiae_contig12510:736..1676+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGTCGGAGTACGAAACCCCGCACGGGAGGATCGACCTGAGCTCCTG CATGACGGTCAAGTCGGCCGAGCAGAAGACCAGCAAGCGAAACGCCCTGG AGGTTTCCACCCACGACACCACGTACTTCATGTACGCCAACACCGAGAAG GTAGGTGCAGCAGAGTCAGTAATAGGACTAAATAAATACATAGGATACCT ACCGTAAAAAAAAAAAACGCTTCCCGAGAGCACCGACAGCTGTGCAACAT ACCCCCAGACTCCAATACAGCAAAAAGTGGCATGTAGATATTACATACAT AAGCGAGAAATCTTATATTTTGCACACATACACATGTCGGTATGAGGAGG GTTGGACCAAAACGAAGCACCATTTAATGTGATGCTGCCTTGTACCATAT GTATGTAGTAGTACAACACTTTGTTGTGTGCACTTTTCCTTTTCCCCCCT TCGCCCACGATGAACCAACTCACCGTTGGCATGACGATGATGCCGCGGGT GTGATCTCAAAAAGCGCACAAAGAAACACCAGTAAATGCTCTCTCTTATT TTCTGTGTAAATAAATAGAGAAAAAAATGCCACAAGTCCAGCGGGCTGGC TGACCGATCCGGGCTTGTCTTCGTCTCCCCCCCCCCCCCCCCCCCCCCCC CCCCCGCCCCGTCGTGCCCCCCCCCGCTTTTCCCCCTACTGTGCAGCGGC ACGCGACGGGGGGGGCGGCCCGNNNNNNNNNNTTGTATATCAAATATAGA AAAAAAAGCCCCCCCCGCCCCGGCGCGTGGCCCCCGCCCGGGTTTGTTTT GCTTCCCCCCCCCCCCCCCCCCCACCCGTGCGGTTTGTCGTGTCTCTTCT GGCGATTCTCTCTCAGGAGAAGGACGACTGGATAGGGGCGATCGGCAGAG CAATAGTTCAGGCGTCCAGCACTTATCAGGGGGACAACAAC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12510:736..1676+

>mRNA_L-elsbetiae_contig12510.2040.1 ID=mRNA_L-elsbetiae_contig12510.2040.1|Name=mRNA_L-elsbetiae_contig12510.2040.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=450bp|location=Sequence derived from alignment at L-elsbetiae_contig12510:736..1676+ (Laminarionema elsbetiae ELsaHSoW15)
GCGCAGTCGGAGTACGAAACCCCGCACGGGAGGATCGACCTGAGCTCCTG
CATGACGGTCAAGTCGGCCGAGCAGAAGACCAGCAAGCGAAACGCCCTGG
AGGTTTCCACCCACGACACCACGTACTTCATGTACGCCAACACCGAGAAG
GCGCAGTCGGAGTACGAAACCCCGCACGGGAGGATCGACCTGAGCTCCTG
CATGACGGTCAAGTCGGCCGAGCAGAAGACCAGCAAGCGAAACGCCCTGG
AGGTTTCCACCCACGACACCACGTACTTCATGTACGCCAACACCGAGAAG
GAGAAGGACGACTGGATAGGGGCGATCGGCAGAGCAATAGTTCAGGCGTC
CAGCACTTATCAGGGGGACAACAACGAGAAGGACGACTGGATAGGGGCGA
TCGGCAGAGCAATAGTTCAGGCGTCCAGCACTTATCAGGGGGACAACAAC
back to top