mRNA_L-elsbetiae_contig12508.2039.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12508.2039.1
Unique NamemRNA_L-elsbetiae_contig12508.2039.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12508.2039.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12508contigL-elsbetiae_contig12508:3242..4114 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionGalactose-3-O-sulfotransferase
Ec32 orthologEc-11_001430.1
Exons2
Model size504
Cds size195
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12508.2039.1prot_L-elsbetiae_contig12508.2039.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12508 3447..4010 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.2475567-UTR-L-elsbetiae_contig12508:3241..34461622815445.2475567-UTR-L-elsbetiae_contig12508:3241..3446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12508 3242..3446 -
1691682901.4589272-UTR-L-elsbetiae_contig12508:3241..34461691682901.4589272-UTR-L-elsbetiae_contig12508:3241..3446Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12508 3242..3446 -
1622815445.3516104-UTR-L-elsbetiae_contig12508:4010..41141622815445.3516104-UTR-L-elsbetiae_contig12508:4010..4114Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12508 4011..4114 -
1691682901.4915266-UTR-L-elsbetiae_contig12508:4010..41141691682901.4915266-UTR-L-elsbetiae_contig12508:4010..4114Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12508 4011..4114 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.2999964-CDS-L-elsbetiae_contig12508:3446..36141622815445.2999964-CDS-L-elsbetiae_contig12508:3446..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12508 3447..3614 -
1691682901.4697423-CDS-L-elsbetiae_contig12508:3446..36141691682901.4697423-CDS-L-elsbetiae_contig12508:3446..3614Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12508 3447..3614 -
1622815445.3405242-CDS-L-elsbetiae_contig12508:3983..40101622815445.3405242-CDS-L-elsbetiae_contig12508:3983..4010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12508 3984..4010 -
1691682901.481318-CDS-L-elsbetiae_contig12508:3983..40101691682901.481318-CDS-L-elsbetiae_contig12508:3983..4010Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12508 3984..4010 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12508.2039.1

>prot_L-elsbetiae_contig12508.2039.1 ID=prot_L-elsbetiae_contig12508.2039.1|Name=mRNA_L-elsbetiae_contig12508.2039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=65bp
MLDGFPEAKHPSMSQLDLGTFPINCINHGTQDVQKPGGDGVASSATPEEL
YRRLHSCHGRPLPS*
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mRNA from alignment at L-elsbetiae_contig12508:3242..4114-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12508.2039.1 ID=mRNA_L-elsbetiae_contig12508.2039.1|Name=mRNA_L-elsbetiae_contig12508.2039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=873bp|location=Sequence derived from alignment at L-elsbetiae_contig12508:3242..4114- (Laminarionema elsbetiae ELsaHSoW15)
GATGGTGCAGCCTGGTCGATAAGGTTTTTTACAAGCACTACGAGCGCAGA
TTCGAAGATCTCGTGCGTGCGCTGCCATCGTCGATATCGGTGCGGGCTGG
TGCAATGCTGGATGGGTTCCCCGAGGCCAAGGTAGGGTGGGAGTGGACCA
AGAGCGTTTAACCGTGAGATAGATGAAGACTGTCAGGCCGCAGCAAATCG
GCCACCAGGCAGTTCTAAATAGCTGTCTGCGGTCAAGCATGTCGTTTTCT
CAGCCAATTTTCGGGGGGTTCGAAATAATACATGGCGCGGCAGTGTGACG
TGCTGATCTTTTCGGGCCCGATGTGTGGTGCCCGTTATATCGTGTAGGAG
TGCGTTATACCAGCGAGCTTGTTTGGTCCAATGGGAATACGAGCCGGTCG
TGTCACGATCTTTTTGCGATGATTAGTGAAAACAATGACATGATCGTGTG
ACCTGGCTCCGTTTTTGTGCGTTAATGACGCGGTCGTGTGCGTGCGCAAG
CATCCGTCGATGTCGCAGCTCGACCTCGGGACGTTCCCGATTAACTGCAT
CAACCACGGTACGCAAGACGTGCAAAAGCCGGGCGGAGACGGGGTAGCAT
CAAGCGCCACCCCAGAAGAGCTCTACCGGCGCCTCCACTCGTGCCACGGC
CGCCCTCTCCCCTCATGACGTCACGGCCCAGCCCAGTAGTTCGAGGCGTG
TTGTAGCTGTACATTATTTGTTTCGGCGCGCGGGTTTGTAGTCATTACTA
CTTTTCCTGTTCCGTGGTGTGCTTCCCCCTTGGGTGCTGGGGGGGGGGGG
TTGTTTCGTCCGCTCTTTGCGTGGGGCATGTGTCTTTTTCTGTGCTGTTT
GCGTGGGTTCCCTCTCTCGTGGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12508:3242..4114-

>mRNA_L-elsbetiae_contig12508.2039.1 ID=mRNA_L-elsbetiae_contig12508.2039.1|Name=mRNA_L-elsbetiae_contig12508.2039.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=390bp|location=Sequence derived from alignment at L-elsbetiae_contig12508:3242..4114- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGATGGGTTCCCCGAGGCCAAGATGCTGGATGGGTTCCCCGAGGC
CAAGCATCCGTCGATGTCGCAGCTCGACCTCGGGACGTTCCCGATTAACT
GCATCAACCACGGTACGCAAGACGTGCAAAAGCCGGGCGGAGACGGGGTA
GCATCAAGCGCCACCCCAGAAGAGCTCTACCGGCGCCTCCACTCGTGCCA
CGGCCGCCCTCTCCCCTCATGACATCCGTCGATGTCGCAGCTCGACCTCG
GGACGTTCCCGATTAACTGCATCAACCACGGTACGCAAGACGTGCAAAAG
CCGGGCGGAGACGGGGTAGCATCAAGCGCCACCCCAGAAGAGCTCTACCG
GCGCCTCCACTCGTGCCACGGCCGCCCTCTCCCCTCATGA
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