mRNA_L-elsbetiae_contig12504.2038.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5KMQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMQ9_9PHAE) HSP 1 Score: 113 bits (283), Expect = 4.120e-25 Identity = 95/241 (39.42%), Postives = 123/241 (51.04%), Query Frame = 1 Query: 10 MSGPDNGQRRCGGFIARDTSVYVCRKCNKDYSVKRSRDRCPCHHNPF-DLNLSASSPERQAST-PSAGSVGRAAGSSLFDVVGPGNHPTANAGEGFDGDGVADSGNDIG-GGVDGADDEQAPSSD---------------SGAEDEDTSGPGGLGGLRQRIEENFRLSELGA---DHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGASPATPAL 669 MS G R G R+ V+ C C +++V+R RDRC C NPF +L+ A+ P A+T P+A S AAG SL + GPG PT A E +GD + DS ++G GG++ AD+ D SG E+T G GLG L R+EE R E D DE +++DGGG+E GL+DE YDDFQGD+ E P PE+ P DGGG S A P L Sbjct: 1 MSEAGAGARPVGPIAGREAVVHQCAHCGTEFTVRRKRDRCRCCWNPFGNLSAVATPPHAAATTTPAAISGQSAAGCSLHAMRGPGRDPTLEAQE-SEGDDMPDSAQEVGAGGLESADNGSGEGDDFGGXXXXXXXXDGSASGGAHEETGGARGLGNLMGRVEEVERTVESSGRDTDAGDEYSMEDGGGVEGDD-----GLNDEGYDDFQGDIDYEGG-PVEPEVFLLPEDGGGTSSAIPRL 234
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5K2F5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2F5_9PHAE) HSP 1 Score: 110 bits (276), Expect = 6.380e-23 Identity = 91/221 (41.18%), Postives = 118/221 (53.39%), Query Frame = 1 Query: 70 VYVCRKCNKDYSVKRSRDRCPCHHNPF-DLNLSASSPERQAST-PSAGSVGRAAGSSLFDVVGPGNHPTANAGEGFDGDGVADSGNDIG-GGVDGADDEQAPSSD---------------SGAEDEDTSGPGGLGGLRQRIEENFRLSELGA---DHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGASPATPAL 669 V+ C C +++V+R RDRC C NPF +L+ A+ P A+T P+A S AAG SL V GPG PT A E +GD + DS +++G GG++GAD+ D SG E+T G GLG L R+EE R E D DE +++DGGG+E GL+DE YDDFQGD+ E P PE+ P DGGG S A P L Sbjct: 9 VHQCAHCGTEFTVRRERDRCRCRWNPFGNLSAVATPPHAAATTTPAAISGQSAAGCSLHAVRGPGRDPTLEAQE-SEGDDMPDSAHEVGAGGLEGADNGSGEGDDXXXXXXXXXXXDGSASGGAHEETGGARGLGNLMGRVEEVERTVESSGRDTDAGDEYSMEDGGGVEGDD-----GLNDEGYDDFQGDIDYEGG-PVEPEVFLLPEDGGGTSSAIPRL 222
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5KE55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE55_9PHAE) HSP 1 Score: 80.1 bits (196), Expect = 2.600e-13 Identity = 73/162 (45.06%), Postives = 88/162 (54.32%), Query Frame = 1 Query: 226 GSSLFDVVGPGNHPTANAGEGFDGDGVADSGNDIGGGVD--GADDEQAPSSDSGAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGASPATPALAMFSPKTEVYCT 705 GS L V GN A+A +G GD V DS +++G D GA D+ S G +DEDT GGL GL +RIEEN +S G DE VDDGG +ES E IGLDDE Y+DFQG+V N +D PE+ P GGAS A P L T Y + Sbjct: 9 GSYLPAVRERGNDAPADA-QGSHGDDVPDSTSEVGAVDDFGGAGDDSR--SADGKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYNDFQGNVDNRGTDG-APEVFEPPGHNGGASSA-PRLNKLHTMTPSYAS 165
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5KYS4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYS4_9PHAE) HSP 1 Score: 77.0 bits (188), Expect = 4.850e-13 Identity = 68/147 (46.26%), Postives = 84/147 (57.14%), Query Frame = 1 Query: 226 GSSLFDVVGPGNHPTANAGEGFDGDGVADSGNDIGGGVD-GADDEQAPSSDSGAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASD--PE---RPELIPTPHDGGGA 648 GSSL V GN TA+A +G GD V DS +D G G D G + + S+D G EDED GGL + +RI+EN +S G DE V+DGG ++S E IGLDDE YDDFQG+V N +D PE PE+ P GGA Sbjct: 32 GSSLPAVRERGNDATADA-QGSHGDKVPDSTSDAGAGDDFGGAGDDSHSAD-GREDEDIGADGGLDDILERIQENLGVSGEGTGTDDEGTVEDGGDMDSGGEEGDIGLDDERYDDFQGNVDNRGTDGAPEVVLPPEVSLPPGQSGGA 176
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5K0J4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J4_9PHAE) HSP 1 Score: 80.5 bits (197), Expect = 1.370e-12 Identity = 66/143 (46.15%), Postives = 79/143 (55.24%), Query Frame = 1 Query: 283 EGFDGDGVADSGNDIGGGVD--GADDEQAPSSDSGAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGASPATPALAMFSPKTEVYCT 705 +G GD V DS +++G D GA D+ S G +DEDT GGL GL +RIEEN +S G DE VDDGG +ES E IGLDDE YDDFQG+V N +D PE+ P GGAS A P L T Y + Sbjct: 34 QGSHGDDVPDSTSEVGAVDDFGGAGDDSR--SADGKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYDDFQGNVDNRGTDG-APEVFEPPGHNGGASSA-PRLNKLHTMTPSYAS 172
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5KJM6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJM6_9PHAE) HSP 1 Score: 79.7 bits (195), Expect = 2.230e-12 Identity = 54/109 (49.54%), Postives = 62/109 (56.88%), Query Frame = 1 Query: 379 GAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGASPATPALAMFSPKTEVYCT 705 G +DEDT GGL GL +RIEEN +S G DE VDDGG +ES E IGLDDE YDDFQG+V N +D PE+ P GGAS A P L T Y + Sbjct: 75 GKKDEDTGTGGGLRGLLERIEENLGVSREGTGTDDEGTVDDGGDMESGGEEGDIGLDDERYDDFQGNVDNRGTDG-APEVFEPPGHNGGASSA-PRLNKLHTMTPSYAS 181
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5JG22_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG22_9PHAE) HSP 1 Score: 68.2 bits (165), Expect = 6.510e-9 Identity = 63/148 (42.57%), Postives = 78/148 (52.70%), Query Frame = 1 Query: 283 EGFDGDGVADSGNDIGGGVD--GADDEQAPSSDSGAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASD--PE---RPELIPTPHDGGGASPATPALAMFSPKTEVYCT 705 EG GD V DS +D+G G D GA D+ S G ED++ GGL L RIEE+ +S G +E V+ GG ++S E IGLDDE YDDFQG+V N +D PE PE+ P GGAS A P L T Y + Sbjct: 27 EGSHGDKVPDSTSDVGAGDDFGGAGDDSR--SADGREDDEKCADGGLEDLLARIEESLGVSGEGTGTENEGTVEAGGDMDSGGEEGDIGLDDERYDDFQGNVDNRGTDGTPEVVLPPEVFLPPGQNGGASSA-PRLNWLHTMTPSYAS 171
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5K9M0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M0_9PHAE) HSP 1 Score: 64.7 bits (156), Expect = 1.700e-7 Identity = 78/241 (32.37%), Postives = 106/241 (43.98%), Query Frame = 1 Query: 10 MSGPDNGQRRCGGFIARDTSVYVCRKCNKDYSVKRSRDRCPCHH--------NPFDLNLSASSPERQASTPSAGSVGRAAGSSLFDVVGPGNHPTANAGE-GFDGDGVAD-SGNDIGGGVD----------------GADDEQAPSSDSGAEDEDTSGP-GGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDGGGAS 651 MSG G +R ++ + C +C + Y+ +R ++RC C NPF+L+ ++ + + SV + AGSS V N T + E G GD + D S D+G G + PS+D ED+D G GG+ + RIE+N + DE D G S IGLDDE YDDFQGDV N S E PE+ P DGGGAS Sbjct: 1 MSGSSGGGQRPSRDSLSVSANWTCEECGEVYTQRRLQERCNCRRDSRNRLVLNPFNLSAPSARRQHTITVSREDSVRKDAGSSRPVVRERENGATDDNQEAGSCGDDMPDISTYDVGAGDNFGGXXXXXXXXXXXXXXXXXXXXPSADGPPEDDDGVGDDGGINDVMARIEKNLAVIGTNTGTDDEDGSSDCGDEHSD-----IGLDDERYDDFQGDVDNRGSCSE-PEVFLLPEDGGGAS 235
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Match: A0A6H5JSZ8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSZ8_9PHAE) HSP 1 Score: 63.9 bits (154), Expect = 2.530e-7 Identity = 49/116 (42.24%), Postives = 67/116 (57.76%), Query Frame = 1 Query: 295 GDGVADSGNDIGGGVD-GADDEQAPSSDSGAEDEDTSGPGGLGGLRQRIEENFRLSELGADHLDECNVDDGGGLESFVEPDAIGLDDEEYDDFQGDVGNEASDPERPELIPTPHDG 639 GD V DS +D+G G D G + + S+D G EDED G L L +RIEEN +S G DE V+DGG ++S+ E I L+DE YDDFQG+V N + ++P ++G Sbjct: 8 GDKVPDSTSDVGAGGDFGGAGDDSHSAD-GREDEDIGADGELDDLLERIEENLGVSGEGTGTDDEGTVEDGGDMDSWGEEGDICLEDERYDDFQGNVNNRGTHGAPEVVLPPEYEG 122 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12504.2038.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12504.2038.1 >prot_L-elsbetiae_contig12504.2038.1 ID=prot_L-elsbetiae_contig12504.2038.1|Name=mRNA_L-elsbetiae_contig12504.2038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=259bp MSGPDNGQRRCGGFIARDTSVYVCRKCNKDYSVKRSRDRCPCHHNPFDLNback to top mRNA from alignment at L-elsbetiae_contig12504:2536..4254- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12504.2038.1 ID=mRNA_L-elsbetiae_contig12504.2038.1|Name=mRNA_L-elsbetiae_contig12504.2038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1719bp|location=Sequence derived from alignment at L-elsbetiae_contig12504:2536..4254- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12504:2536..4254- >mRNA_L-elsbetiae_contig12504.2038.1 ID=mRNA_L-elsbetiae_contig12504.2038.1|Name=mRNA_L-elsbetiae_contig12504.2038.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1554bp|location=Sequence derived from alignment at L-elsbetiae_contig12504:2536..4254- (Laminarionema elsbetiae ELsaHSoW15)back to top |