mRNA_L-elsbetiae_contig12500.2037.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12500.2037.1
Unique NamemRNA_L-elsbetiae_contig12500.2037.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: D7FLM8_ECTSI (Kinesin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLM8_ECTSI)

HSP 1 Score: 95.1 bits (235), Expect = 1.040e-19
Identity = 50/54 (92.59%), Postives = 50/54 (92.59%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSAHSA 162
            QDSLSADSKTLMLVCVSPVVQSAEES CSLNFAARVRTVELGKAHKHG S  SA
Sbjct:  725 QDSLSADSKTLMLVCVSPVVQSAEESWCSLNFAARVRTVELGKAHKHGASGASA 778          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A7S2Y4F2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y4F2_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 1.630e-14
Identity = 42/66 (63.64%), Postives = 49/66 (74.24%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKH---GDSAHSAHGVGGLVPR 189
            QDSLS DSKTLM VC+SPV+ +A+ES CSLNFA+RVRTVELGKA K+   G +  SA   GG   R
Sbjct:   37 QDSLSQDSKTLMFVCISPVMYNADESFCSLNFASRVRTVELGKASKNVSPGVTPKSATPAGGRKSR 102          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A813A2Y1_SYMMI (Kifc3 protein n=2 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A813A2Y1_SYMMI)

HSP 1 Score: 76.3 bits (186), Expect = 1.900e-14
Identity = 40/58 (68.97%), Postives = 46/58 (79.31%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSAHSAHGVG 174
            QDSLS DSKTLM VCVSPVV ++EE+ CSLNFA+RVR+VELGKA K+   A  A G G
Sbjct:  105 QDSLSQDSKTLMFVCVSPVVYNSEETFCSLNFASRVRSVELGKASKNVGQAPGATGAG 162          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A836CB76_9STRA (Kinesin-like protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB76_9STRA)

HSP 1 Score: 75.1 bits (183), Expect = 7.320e-13
Identity = 47/86 (54.65%), Postives = 56/86 (65.12%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAH-KHGDSAHSAHGVGGLVPRSSAARGR*KYPPGFWCGERSGL 255
            QDSL+ADSKTLM VC+SPV+ +AEE+ CSLNFA+RVRTVELGKA  +H   A S    GG   R+SA     + P  F  G    L
Sbjct:  292 QDSLAADSKTLMFVCISPVIYNAEETFCSLNFASRVRTVELGKATVRH---ALSLDDGGGXXARASA-----RSPSPFTSGSNGSL 369          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A7S2GC58_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2GC58_9STRA)

HSP 1 Score: 69.3 bits (168), Expect = 8.320e-12
Identity = 34/47 (72.34%), Postives = 40/47 (85.11%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKH 141
            QDSLS DSKTLM VC+SPV+ +AEE+ CSLNFA RV +VELGKA K+
Sbjct:  104 QDSLSGDSKTLMFVCISPVMYNAEETFCSLNFAQRVNSVELGKATKN 150          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A2R5G4J1_9STRA (Kinesin-like protein n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G4J1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 1.590e-11
Identity = 38/47 (80.85%), Postives = 39/47 (82.98%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKH 141
            QDSLS DSKTLM V VSPV  +AEES CSLNFAAR RTVELGKA KH
Sbjct:  835 QDSLSQDSKTLMFVQVSPVKTNAEESFCSLNFAARARTVELGKASKH 881          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A7S3HLW0_9STRA (Kinesin-like protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HLW0_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.100e-11
Identity = 34/46 (73.91%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHK 138
            QDS+S DSKTLM+VCVSPV+ ++EE+ CSLNFA RVRTVELG+A K
Sbjct:  293 QDSISQDSKTLMIVCVSPVLYNSEETFCSLNFAGRVRTVELGRASK 338          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A6U1BUB9_9STRA (Kinesin-like protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A6U1BUB9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 2.860e-11
Identity = 36/51 (70.59%), Postives = 43/51 (84.31%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSA 153
            QDSLS D+KTLM VCVSPV+ ++EE+ CSL FAARVRTVELGKA ++  SA
Sbjct:  662 QDSLSGDAKTLMFVCVSPVIYNSEETYCSLTFAARVRTVELGKAQRNVVSA 712          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: A0A7S3XUD6_HETAK (Kinesin-like protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XUD6_HETAK)

HSP 1 Score: 66.6 bits (161), Expect = 7.110e-10
Identity = 36/68 (52.94%), Postives = 47/68 (69.12%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSAHSAHGVGGLVPRSSAAR 204
            QDSLS DSKTLM VC+SPV  + +E+ CSLNFA R R+VELG+A ++  S+      G   P SS++R
Sbjct:  328 QDSLSGDSKTLMFVCISPVAFNGDETFCSLNFAERARSVELGRAQRNVTSS------GRTPPNSSSSR 389          
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Match: UPI0014255726 (kinesin-like protein KIFC3 n=1 Tax=Anneissia japonica TaxID=1529436 RepID=UPI0014255726)

HSP 1 Score: 65.9 bits (159), Expect = 1.630e-9
Identity = 36/54 (66.67%), Postives = 41/54 (75.93%), Query Frame = 1
Query:    1 QDSLSADSKTLMLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSAHSA 162
            QDSL  DSKTLM+V VSPV ++A E+ CSLNFA RVR+VELG A K  DSA  A
Sbjct:  937 QDSLGGDSKTLMVVQVSPVFKNASETQCSLNFAQRVRSVELGAATKKTDSAEVA 990          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12500.2037.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLM8_ECTSI1.040e-1992.59Kinesin-like protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A7S2Y4F2_9STRA1.630e-1463.64Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A813A2Y1_SYMMI1.900e-1468.97Kifc3 protein n=2 Tax=Symbiodinium microadriaticum... [more]
A0A836CB76_9STRA7.320e-1354.65Kinesin-like protein n=1 Tax=Tribonema minus TaxID... [more]
A0A7S2GC58_9STRA8.320e-1272.34Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A2R5G4J1_9STRA1.590e-1180.85Kinesin-like protein n=1 Tax=Hondaea fermentalgian... [more]
A0A7S3HLW0_9STRA2.100e-1173.91Kinesin-like protein n=2 Tax=Spumella elongata Tax... [more]
A0A6U1BUB9_9STRA2.860e-1170.59Kinesin-like protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S3XUD6_HETAK7.110e-1052.94Kinesin-like protein n=1 Tax=Heterosigma akashiwo ... [more]
UPI00142557261.630e-966.67kinesin-like protein KIFC3 n=1 Tax=Anneissia japon... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12500contigL-elsbetiae_contig12500:3235..4051 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.7
Seed ortholog evalue1.6e-11
Seed eggNOG ortholog2880.D7FLM8
KEGG koko:K10406
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.microtubule motor activity
EggNOG OGsCOG5059@1,KOG0239@2759
COG Functional cat.Z
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size486
Cds size180
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12500.2037.1prot_L-elsbetiae_contig12500.2037.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12500 3508..4018 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.077736-UTR-L-elsbetiae_contig12500:3234..35071622815445.077736-UTR-L-elsbetiae_contig12500:3234..3507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12500 3235..3507 -
1691682901.3710911-UTR-L-elsbetiae_contig12500:3234..35071691682901.3710911-UTR-L-elsbetiae_contig12500:3234..3507Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12500 3235..3507 -
1622815445.112539-UTR-L-elsbetiae_contig12500:4018..40511622815445.112539-UTR-L-elsbetiae_contig12500:4018..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12500 4019..4051 -
1691682901.4042988-UTR-L-elsbetiae_contig12500:4018..40511691682901.4042988-UTR-L-elsbetiae_contig12500:4018..4051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12500 4019..4051 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815445.089016-CDS-L-elsbetiae_contig12500:3507..35911622815445.089016-CDS-L-elsbetiae_contig12500:3507..3591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12500 3508..3591 -
1691682901.3838515-CDS-L-elsbetiae_contig12500:3507..35911691682901.3838515-CDS-L-elsbetiae_contig12500:3507..3591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12500 3508..3591 -
1622815445.0986955-CDS-L-elsbetiae_contig12500:3922..40181622815445.0986955-CDS-L-elsbetiae_contig12500:3922..4018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12500 3923..4018 -
1691682901.393686-CDS-L-elsbetiae_contig12500:3922..40181691682901.393686-CDS-L-elsbetiae_contig12500:3922..4018Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12500 3923..4018 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12500.2037.1

>prot_L-elsbetiae_contig12500.2037.1 ID=prot_L-elsbetiae_contig12500.2037.1|Name=mRNA_L-elsbetiae_contig12500.2037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=60bp
MLVCVSPVVQSAEESMCSLNFAARVRTVELGKAHKHGDSAHSAHGVGGLV
PRSSAARGR*
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mRNA from alignment at L-elsbetiae_contig12500:3235..4051-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12500.2037.1 ID=mRNA_L-elsbetiae_contig12500.2037.1|Name=mRNA_L-elsbetiae_contig12500.2037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=817bp|location=Sequence derived from alignment at L-elsbetiae_contig12500:3235..4051- (Laminarionema elsbetiae ELsaHSoW15)
CAGGACTCGCTGAGCGCGGACTCCAAGACTCTCATGCTGGTGTGCGTGAG TCCTGTCGTACAGAGCGCTGAGGAGTCCATGTGCTCCCTCAACTTTGCCG CGAGGGTCCGCACCGTGGAACTCGGAAAGGTAGGCTCGCGGACGAAATAT TTCAATAGATTTGCTCGGCTCATATTTTTAACCGGCTTGATTCTATCGCG TTCGACGAACGCCGATGACAACGGCATGAATGGCGGAGAACATTTACATT GAGACCAATTACTTCGATAAGTCTACCTGGTGTTGAAAACACAATTACGG GGACTCTTCCCGAATTCGCGGCGAGGTACATGCATACCCTGTTCGTAGCA GCAGCCATCCGCCATTGTGACACAGTGTGCATATTGCATACATTTATCAG ATCGGCCGTCCTCTCATTCCCAACTCTTTTTCGACCCAAAATGATAACCA ACCCGTATAGGCGCACAAGCATGGCGATTCTGCACACTCCGCTCACGGTG TTGGCGGGTTAGTTCCGCGTTCTTCGGCCGCGCGGGGCCGTTAAAAGTAC CCGCCCGGCTTCTGGTGTGGGGAAAGAAGCGGGCTGAGGTGGATGTTTTT GGTTGGAGAGTAGGTGCATGCAGTCGCCACTTTGACACCGCTCTCCGGAA TTGGAGGACGTATGTGGCTCGAATGAGTTCAGACCCGACGCCGAACGTTG TTGACGAATCCGAATAATTCGTTCGATACCGAGATCAAGACACGGAACAC TCGAAAGTGGGGCAGAATCGAAGTAGTAGATCTAATCTTCGATGTATTAC GCATTCGCACGTTACGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12500:3235..4051-

>mRNA_L-elsbetiae_contig12500.2037.1 ID=mRNA_L-elsbetiae_contig12500.2037.1|Name=mRNA_L-elsbetiae_contig12500.2037.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=360bp|location=Sequence derived from alignment at L-elsbetiae_contig12500:3235..4051- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTGGTGTGCGTGAGTCCTGTCGTACAGAGCGCTGAGGAGTCCATGTG
CTCCCTCAACTTTGCCGCGAGGGTCCGCACCGTGGAACTCGGAAAGATGC
TGGTGTGCGTGAGTCCTGTCGTACAGAGCGCTGAGGAGTCCATGTGCTCC
CTCAACTTTGCCGCGAGGGTCCGCACCGTGGAACTCGGAAAGGCGCACAA
GCATGGCGATTCTGCACACTCCGCTCACGGTGTTGGCGGGTTAGTTCCGC
GTTCTTCGGCCGCGCGGGGCCGTTAAGCGCACAAGCATGGCGATTCTGCA
CACTCCGCTCACGGTGTTGGCGGGTTAGTTCCGCGTTCTTCGGCCGCGCG
GGGCCGTTAA
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