mRNA_L-elsbetiae_contig125.2030.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig125.2030.1
Unique NamemRNA_L-elsbetiae_contig125.2030.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig125.2030.1 vs. uniprot
Match: D8LBK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBK8_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.330e-21
Identity = 47/65 (72.31%), Postives = 53/65 (81.54%), Query Frame = 1 
Query:   55 GGFSHRVHAIYREFLAVVQGNLEEFLSAEGLTEAQLRDACEQEMQAKDPGGLSFMHTLISSWEFS 249
            G FS RVH +Y+EFL ++Q NLEEFL AEGLTE QLRDACE+EM+AK   G  FMHTLISSWEFS
Sbjct:   93 GHFSQRVHELYQEFLKILQSNLEEFLQAEGLTETQLRDACEKEMRAKGGRGDCFMHTLISSWEFS 157
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig125.2030.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LBK8_ECTSI1.330e-2172.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig125contigL-elsbetiae_contig125:4672..5308 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size255
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815444.2877357-CDS-L-elsbetiae_contig125:4671..47951622815444.2877357-CDS-L-elsbetiae_contig125:4671..4795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 4672..4795 +
1691682900.7530296-CDS-L-elsbetiae_contig125:4671..47951691682900.7530296-CDS-L-elsbetiae_contig125:4671..4795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 4672..4795 +
1622815444.30369-CDS-L-elsbetiae_contig125:5177..53081622815444.30369-CDS-L-elsbetiae_contig125:5177..5308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 5178..5308 +
1691682900.7630007-CDS-L-elsbetiae_contig125:5177..53081691682900.7630007-CDS-L-elsbetiae_contig125:5177..5308Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig125 5178..5308 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig125.2030.1prot_L-elsbetiae_contig125.2030.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig125 4672..5308 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig125.2030.1

>prot_L-elsbetiae_contig125.2030.1 ID=prot_L-elsbetiae_contig125.2030.1|Name=mRNA_L-elsbetiae_contig125.2030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=85bp
MGETTERGGAEQESGVEIGGFSHRVHAIYREFLAVVQGNLEEFLSAEGLT
EAQLRDACEQEMQAKDPGGLSFMHTLISSWEFSR*
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mRNA from alignment at L-elsbetiae_contig125:4672..5308+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig125.2030.1 ID=mRNA_L-elsbetiae_contig125.2030.1|Name=mRNA_L-elsbetiae_contig125.2030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=637bp|location=Sequence derived from alignment at L-elsbetiae_contig125:4672..5308+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAGACCACGGAGCGGGGGGGGGCGGAGCAGGAGTCTGGTGTCGA
GATCGGCGGCTTCAGCCATCGCGTCCACGCCATCTACCGGGAGTTCTTGG
CCGTCGTCCAGGGTAACCTCGAAGGTATGCATGCACCCATGCTTCGATCG
TCAGGATCGCCTCTACACGGCCTACTGCCTACGCTCGTGCCAAAAGAGCT
GACGTCAAGTGTTTCATGTACACAGATTGCCGTGCACCAACATCTCAGAT
ACCTATATATCTAATTACTGCACAAAGAGCACACATACCGTCTTCAGCGG
CTAACATGTTCAGCGGGGCAAAACCAAGCAGTGCTACAGTACATAGTGCG
GTACTGCTTGCTGGGTTACCCTGTACACCCTTTGTCCAGAGAGGACGGAA
CACACATTTTGACGCATCATCGCCGGATTTTATTTTGGCCCGCGGCTCCT
GTGCTTTCCGCCACGCGCGCGTGCCTGGGCGCGTGTATGTATCTGTTGTC
TCTTAGAGTTTTTATCGGCAGAAGGATTGACCGAAGCCCAGCTTCGGGAC
GCGTGCGAGCAGGAGATGCAAGCCAAGGACCCGGGGGGGCTCAGTTTCAT
GCATACTCTTATCTCCTCGTGGGAGTTCTCAAGGTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig125:4672..5308+

>mRNA_L-elsbetiae_contig125.2030.1 ID=mRNA_L-elsbetiae_contig125.2030.1|Name=mRNA_L-elsbetiae_contig125.2030.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=510bp|location=Sequence derived from alignment at L-elsbetiae_contig125:4672..5308+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCGAGACCACGGAGCGGGGGGGGGCGGAGCAGGAGTCTGGTGTCGA
GATCGGCGGCTTCAGCCATCGCGTCCACGCCATCTACCGGGAGTTCTTGG
CCGTCGTCCAGGGTAACCTCGAAGATGGGCGAGACCACGGAGCGGGGGGG
GGCGGAGCAGGAGTCTGGTGTCGAGATCGGCGGCTTCAGCCATCGCGTCC
ACGCCATCTACCGGGAGTTCTTGGCCGTCGTCCAGGGTAACCTCGAAGAG
TTTTTATCGGCAGAAGGATTGACCGAAGCCCAGCTTCGGGACGCGTGCGA
GCAGGAGATGCAAGCCAAGGACCCGGGGGGGCTCAGTTTCATGCATACTC
TTATCTCCTCGTGGGAGTTCTCAAGGTAAAGTTTTTATCGGCAGAAGGAT
TGACCGAAGCCCAGCTTCGGGACGCGTGCGAGCAGGAGATGCAAGCCAAG
GACCCGGGGGGGCTCAGTTTCATGCATACTCTTATCTCCTCGTGGGAGTT
CTCAAGGTAA
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