mRNA_L-elsbetiae_contig1249.2024.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1249.2024.1
Unique NamemRNA_L-elsbetiae_contig1249.2024.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1249.2024.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1249contigL-elsbetiae_contig1249:9641..10385 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size745
Cds size522
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1249.2024.1prot_L-elsbetiae_contig1249.2024.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1249 9740..10261 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.4338944-UTR-L-elsbetiae_contig1249:9640..97391622815442.4338944-UTR-L-elsbetiae_contig1249:9640..9739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1249 9641..9739 +
1691682900.288887-UTR-L-elsbetiae_contig1249:9640..97391691682900.288887-UTR-L-elsbetiae_contig1249:9640..9739Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1249 9641..9739 +
1622815442.4582334-UTR-L-elsbetiae_contig1249:10261..103851622815442.4582334-UTR-L-elsbetiae_contig1249:10261..10385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1249 10262..10385 +
1691682900.3086748-UTR-L-elsbetiae_contig1249:10261..103851691682900.3086748-UTR-L-elsbetiae_contig1249:10261..10385Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1249 10262..10385 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.4465764-CDS-L-elsbetiae_contig1249:9739..102611622815442.4465764-CDS-L-elsbetiae_contig1249:9739..10261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1249 9740..10261 +
1691682900.2982464-CDS-L-elsbetiae_contig1249:9739..102611691682900.2982464-CDS-L-elsbetiae_contig1249:9739..10261Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1249 9740..10261 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1249.2024.1

>prot_L-elsbetiae_contig1249.2024.1 ID=prot_L-elsbetiae_contig1249.2024.1|Name=mRNA_L-elsbetiae_contig1249.2024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MVRRASEASFFFRYFSSKKQDSRYIGGGVLFVMRKMVQAASDFRFVGSHN
YILRSTSKYSPSIFECDRHKELRRDVTVPVDALKHSRTCGSVFCGIAQEM
NVPAGIEGGKQPNAAHKLSVLGDGLPTYVCMHVVLRTVVFPPECRGIGGK
GVALLAVVCDRHASSRRSNRRYR*
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mRNA from alignment at L-elsbetiae_contig1249:9641..10385+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1249.2024.1 ID=mRNA_L-elsbetiae_contig1249.2024.1|Name=mRNA_L-elsbetiae_contig1249.2024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=745bp|location=Sequence derived from alignment at L-elsbetiae_contig1249:9641..10385+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGGGTGGAGATTATGCGCCCCTCGTTTCCTTGCCTCCCCTTCCTCAGC
GCGTCGCCTACTTTTGACAGGGTTGTCATGGGGTTGGAAACAAGCAATAA
TGGTGAGGCGCGCGAGCGAAGCGAGCTTTTTTTTTCGTTACTTTTCTAGC
AAAAAACAAGATTCTAGATATATCGGGGGGGGGGTCTTATTCGTGATGCG
AAAAATGGTCCAAGCGGCATCTGATTTTAGGTTTGTCGGAAGCCATAATT
ACATACTTCGAAGTACTTCGAAGTATTCACCGTCTATTTTCGAATGCGAT
CGACACAAGGAACTGAGAAGAGATGTGACAGTTCCGGTGGATGCACTAAA
ACACAGCCGAACTTGTGGGTCTGTCTTTTGTGGCATCGCTCAAGAGATGA
ACGTGCCAGCGGGCATCGAAGGAGGCAAACAGCCAAATGCAGCCCACAAA
CTCTCTGTTTTAGGGGATGGTCTTCCAACGTACGTATGTATGCATGTAGT
CCTTCGAACAGTTGTTTTTCCACCCGAGTGCAGGGGTATAGGAGGGAAAG
GGGTCGCGCTTTTGGCGGTGGTGTGTGACCGCCATGCTTCCTCACGTCGC
AGCAATCGCAGATACAGATAGATTACGATACCACGTACGCTATGTAGGTT
GTAGACTAGCACAAGTAGAACACATTGGTATGTTGTACATACAACATTTA
CTTCAAGGAGTACGACGGCGAGGACGTTCGGGATTCAGAGCAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1249:9641..10385+

>mRNA_L-elsbetiae_contig1249.2024.1 ID=mRNA_L-elsbetiae_contig1249.2024.1|Name=mRNA_L-elsbetiae_contig1249.2024.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig1249:9641..10385+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGAGGCGCGCGAGCGAAGCGAGCTTTTTTTTTCGTTACTTTTCTAG
CAAAAAACAAGATTCTAGATATATCGGGGGGGGGGTCTTATTCGTGATGC
GAAAAATGGTCCAAGCGGCATCTGATTTTAGGTTTGTCGGAAGCCATAAT
TACATACTTCGAAGTACTTCGAAGTATTCACCGTCTATTTTCGAATGCGA
TCGACACAAGGAACTGAGAAGAGATGTGACAGTTCCGGTGGATGCACTAA
AACACAGCCGAACTTGTGGGTCTGTCTTTTGTGGCATCGCTCAAGAGATG
AACGTGCCAGCGGGCATCGAAGGAGGCAAACAGCCAAATGCAGCCCACAA
ACTCTCTGTTTTAGGGGATGGTCTTCCAACGTACGTATGTATGCATGTAG
TCCTTCGAACAGTTGTTTTTCCACCCGAGTGCAGGGGTATAGGAGGGAAA
GGGGTCGCGCTTTTGGCGGTGGTGTGTGACCGCCATGCTTCCTCACGTCG
CAGCAATCGCAGATACAGATAGATGGTGAGGCGCGCGAGCGAAGCGAGCT
TTTTTTTTCGTTACTTTTCTAGCAAAAAACAAGATTCTAGATATATCGGG
GGGGGGGTCTTATTCGTGATGCGAAAAATGGTCCAAGCGGCATCTGATTT
TAGGTTTGTCGGAAGCCATAATTACATACTTCGAAGTACTTCGAAGTATT
CACCGTCTATTTTCGAATGCGATCGACACAAGGAACTGAGAAGAGATGTG
ACAGTTCCGGTGGATGCACTAAAACACAGCCGAACTTGTGGGTCTGTCTT
TTGTGGCATCGCTCAAGAGATGAACGTGCCAGCGGGCATCGAAGGAGGCA
AACAGCCAAATGCAGCCCACAAACTCTCTGTTTTAGGGGATGGTCTTCCA
ACGTACGTATGTATGCATGTAGTCCTTCGAACAGTTGTTTTTCCACCCGA
GTGCAGGGGTATAGGAGGGAAAGGGGTCGCGCTTTTGGCGGTGGTGTGTG
ACCGCCATGCTTCCTCACGTCGCAGCAATCGCAGATACAGATAG
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