mRNA_L-elsbetiae_contig12480.2020.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12480.2020.1
Unique NamemRNA_L-elsbetiae_contig12480.2020.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A6H5JM24_9PHAE (RNB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JM24_9PHAE)

HSP 1 Score: 884 bits (2283), Expect = 8.940e-304
Identity = 438/553 (79.20%), Postives = 493/553 (89.15%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEAFLP-KKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPAWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPELWDPNRRPTEFKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGNPAEFAAYPIRDSNRLVEEYMLLANFLVAQQM-----------LDGADDRAFLRMHPPPPKKELEALKEVLARRGFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAADSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDAIAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEEAVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDIAATFDDVNNTLHLTASSTVTHEWTEATIKVFAKVHVRCTVSDKEGPIRIELEFLRPK 2819
            GV+HGDFP+TVLRGLEAFLP K AE  +D GA  RGSRWKIPD+EI+KRRDLR +RIFTIDPTGARDLDDALSITP+ADGTFEIGVHIADVTYFVRPNS+LDREARRRATTVYLVQQAIPMLPPLLCEELCSLNP VDRLT+SCIWRMN DGTLVD +PAWFGR+VIRSCCKLDY TAQ+MIEG ILPDSASST+PELWDPNRRPTEF C +VC+DVLLM+SLAK RRAKRF+SGALSLNTPKL+F+LD+NGNPA+F +YPIRDSNRLVEEYMLLANFLVAQQ+           ++GADDRAFLRMHPPP    L ALKE LA  G E+D+TSS SIQASLLRLR QC+DE+IAQV T+M TIPMQ+A+YVA+GA DSW HYALNIP+YTHFTSPIRRYADVMVHRILTATL+ TV+ TY+VDAI  TA HCNDK+LAAKAAQER DEVYLAVHVASNPL EEAVV+S+GE+SFTVN+PRLGVTSR++LDKIPDI AT+D++  T+HLT SSTVTH+WT+A IK+F+KV V CTV++K GPI I L+FLRPK
Sbjct:  333 GVNHGDFPRTVLRGLEAFLPPKNAEDGIDAGADTRGSRWKIPDEEISKRRDLRATRIFTIDPTGARDLDDALSITPLADGTFEIGVHIADVTYFVRPNSDLDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPQVDRLTFSCIWRMNVDGTLVD-KPAWFGRTVIRSCCKLDYQTAQHMIEGTILPDSASSTSPELWDPNRRPTEFTCGEVCQDVLLMNSLAKRRRAKRFESGALSLNTPKLTFKLDDNGNPADFGSYPIRDSNRLVEEYMLLANFLVAQQVRPFSLENKNKIMEGADDRAFLRMHPPPIAPGLNALKETLAGCGIEIDITSSGSIQASLLRLRTQCNDEEIAQVCTMMATIPMQSAEYVAAGATDSWRHYALNIPVYTHFTSPIRRYADVMVHRILTATLDGTVESTYEVDAIEETAQHCNDKRLAAKAAQERSDEVYLAVHVASNPLQEEAVVISVGEQSFTVNIPRLGVTSRLFLDKIPDIMATYDELEGTIHLTPSSTVTHQWTDAKIKIFSKVQVLCTVAEKTGPIEILLQFLRPK 884          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A7S2KY36_9STRA (Hypothetical protein n=1 Tax=Skeletonema marinoi TaxID=267567 RepID=A0A7S2KY36_9STRA)

HSP 1 Score: 458 bits (1178), Expect = 6.000e-141
Identity = 264/579 (45.60%), Postives = 356/579 (61.49%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEA------FLPKKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDG-----------EPAWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPELWDPNRRPTEFKCRD-VCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARR-GFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASG--AADSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDA-IAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDIAAT--FDDVNNTLHLTAS-------------STVTHEWTEATIKVFAKVHVRCTVSDKEGPIRIELEFLRP 2816
            GVDHGDFP  VLR ++       FL      D   GA  +   WK  ++    RRD R  RIFTIDPT A+DLDDAL +TP+ DG  EIGVHIADV++F++  S +D+EA RRATTVYLV   IPMLP  LCE  CSLN  V+RL +S +WRMN DGTL              +  W+GR+VI+SC +LDYATAQN+I+G +      +     W  +R+PT     D V  DV LMH +A ARR  RF +GAL+LN  KL+F+L+++G  P   A YPIRDSNRL+EEYMLLAN+ VAQ+++  A  RA LR H PP +  ++++ +V      F++D TSS+++QASL RL  +C DE + Q IT  +  PM+ A+Y+A+G  A + W H+ALNIP YTHFTSPIRRY DV+VHR+L AT+++ VDE  Q    I   A HCNDK++AAK AQER D V+L++++  NP+     V +S+GEK+FTV VP+LG + ++++ +  D   T  + D     H+  S                   W    I VF K+ V CT   +  PI + ++ + P
Sbjct:  216 GVDHGDFPAAVLRDVDKAVKSGRFLENNKSSD---GAVEKDMGWKPTEEMCRGRRDYRNHRIFTIDPTTAKDLDDALHVTPLPDGRVEIGVHIADVSHFIQSGSAVDQEALRRATTVYLVNDVIPMLPRPLCEIACSLNENVERLAFSVVWRMNLDGTLSKKGRKGKNKPKAEDEIWYGRTVIKSCARLDYATAQNIIDGKVATGEPQADE-TFWPKSRQPTGGHTIDQVAADVRLMHKVAMARRQLRFGNGALALNGIKLAFQLEDDGETPKLCAPYPIRDSNRLIEEYMLLANYFVAQRLITHAHGRALLRNHSPPIELGMQSVVDVSKEALNFDIDTTSSSTLQASLSRLSRECDDELVVQCITESLMTPMKPAEYIAAGELAEEDWHHFALNIPYYTHFTSPIRRYPDVIVHRLLQATIDDNVDEFPQNQGEIHSAAGHCNDKRMAAKKAQERSDRVFLSLYLKKNPITSTLGVCLSVGEKTFTVFVPKLGASIKVFVQEHEDCFETNAYTDDGGKRHIVISPKTDAVPGMQQSDDDTEPSWKSLNIGVFTKLEVACTCKARP-PIDVRVKVVGP 789          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: B8C1F9_THAPS (Ribonuclease (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1F9_THAPS)

HSP 1 Score: 450 bits (1157), Expect = 2.180e-140
Identity = 247/502 (49.20%), Postives = 333/502 (66.33%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEAFLPKKAEHDVDTGAAVRGSR-WKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTL---------VDGEPAWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPE-LWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARR-GFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAA--DSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDA-IAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDI 2648
            GVDHG+FP  VLR ++  + K       + A   G   WK  ++    RRD R  R+FTIDPT ARDLDDAL +T + DG  EIGVHIADV++FV+P+S +D EA RRATTVYLV + IPMLP  LCE  CSLN  V+RL +S +WRMN DGTL            +  W+GR+VI+SC +LDYATAQN+I+  +   +  S   E LW  +R+PT      +V  DV LMH +A  RR  RF++GAL+LN  KL+F+L+++G  P   A YPIRDSNRL+EEYMLLANFLVAQ+++  A  RA LR H PP +  ++ + +V      F++D+TSS ++Q SL RL   C DE + Q +T  +  PM+ A+Y+A+G    + W H+ALNIP YTHFTSPIRRYADV+VHR+L ATL++ V E  Q    I   AD CNDK++A+K AQER D V+L++++  +P+     V + IGEK+FTV VP LG+++R++L +  D+
Sbjct:   95 GVDHGEFPPAVLREVDLAV-KSGRFFQSSSATSEGEMGWKPTEEMCRGRRDYRSHRVFTIDPTTARDLDDALHVTQLPDGRVEIGVHIADVSHFVQPSSAVDEEALRRATTVYLVDRVIPMLPRPLCEIACSLNENVERLAFSVVWRMNMDGTLSKKKGSAEKCKEDDIWYGRTVIKSCARLDYATAQNIIDNKVAAANGESEVDETLWPKSRQPTGGHTIAEVAADVRLMHQVAMKRRKLRFENGALALNGIKLTFQLEDDGETPKLCAPYPIRDSNRLIEEYMLLANFLVAQRLITHAKGRALLRQHSPPLEAGMQNVVDVSKESFDFDIDITSSKTLQESLSRLSRTCDDELVIQCVTESLMTPMRPAEYIAAGEVNDEDWQHFALNIPYYTHFTSPIRRYADVIVHRLLQATLDDAVSEFPQTQQEIHSAADQCNDKRMASKKAQERSDRVFLSLYLKEHPIASVLGVCLGIGEKTFTVFVPSLGMSTRVFLQEHEDV 595          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: B7FWN1_PHATC (Predicted protein (Fragment) n=2 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=B7FWN1_PHATC)

HSP 1 Score: 449 bits (1156), Expect = 2.440e-140
Identity = 250/495 (50.51%), Postives = 334/495 (67.47%), Query Frame = 3
Query: 1200 VDHGDFPQTVLRGLEAFLPKKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTL--VDGEP-AWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPE-LWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVL-ARRGFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAAD--SWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENT-VDETYQVDAIAIT--ADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPD 2645
            VDHGDF + VL+ +E  +   A     T     G  WK   +  A RRD R +RIFTIDPT A+DLDDAL +T +ADG  EIGVHIADV+YFVRP+S +D EA+ RATTVYLV + +PMLP  LCE  CSLN  V+RL +SC+W MN DGT+   +G P  W+GRSVI+SC +LDYATAQN+I+G +    +     E LW  +RRPT       V +DV LMH +A ARR  RF +GAL+LN  KL+F+LD +G  P   A YP+RDSNRLVEEYML+AN+LVA++++     RA LR HP P +  L+ +  V  A  GF +D++SS ++ ASL RL  +CSD  + Q +T M+  PMQ A Y A+G  D  +W H+ALNIP YTHFTSPIRRYADV+VHR+L AT++     +T+ +D  A+   A HCN+K++A+K AQERCD V+L++ V + P+  +  +V+S+G  +FTV VP LG+   ++L++  D
Sbjct:   46 VDHGDFDREVLQNVENAV---ASGVFVTSTGELG--WKPTPEMYAGRRDYRDARIFTIDPTTAKDLDDALHVTKLADGRVEIGVHIADVSYFVRPDSPVDTEAQYRATTVYLVDRTVPMLPRPLCEVACSLNENVERLAFSCVWTMNVDGTVRQKNGNPDVWYGRSVIKSCARLDYATAQNIIDGKVGRGESDKAIDEALWPESRRPTGGHTTAQVAQDVRLMHRVAMARRQLRFDNGALALNGIKLTFQLDTDGQTPLLAAPYPLRDSNRLVEEYMLMANYLVAERLITHTGRRAMLRRHPEPLEDGLDKVASVAKAGMGFNVDISSSQALHASLCRLGRECSDPLVLQCVTQMLMTPMQPADYFAAGTMDMAAWKHFALNIPYYTHFTSPIRRYADVIVHRLLQATIDGPEAVQTFPLDTDAVESIAAHCNEKRMASKKAQERCDRVFLSLFVKAKPMKSQLGIVLSVGVSTFTVFVPSLGIAVLLFLEEHKD 535          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A7S4QYK5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QYK5_9STRA)

HSP 1 Score: 466 bits (1198), Expect = 2.700e-139
Identity = 264/569 (46.40%), Postives = 362/569 (63.62%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEAFLPK---KAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPA------------WFGRSVIRSCCKLDYATAQNMIEGAILP-DSASSTAPELWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGNPAEFAA-YPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARR-GFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAADS--WLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDAIAIT---ADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPD---IAATFDDVNNTLHL------TASSTVTHEWTEATIKVFAKVHVRCTVSDKEGPIRIEL 2801
            GVDHGDF   VLR ++  +     + E      A V    W    + +  RRD R  RIFTIDPT A+DLDDAL I P+ DG  E+GVHIADV++FV P++ +D EA RRATTVYLV + IPMLP  LCE  CSLN  V+RL +SC+W+MN DGT++ G+ +            W+GR+VI+SC +LDYATAQN+IEG I   +        LW  +RRPT      DV  DV LMH +A+ARRA RFQ+GAL+LN  KL+F+L  +G   E    YPIRDSNRLVEEYMLLAN+LVA++++  A DRA +R H PP +K LE + +V     GF +D TSS S+Q SL R+  +C+DE + Q +T +  +PM+ A+Y+ +G  +   W H+ALNIP YTHFTSPIRRYADVMVHR+L AT++ T+DE   +   A T    +HCN+K++A+K AQER D V+L++ + + P+     VV+S+GEK+FT+ VP LG+++R ++D+  D   I+   +D    + +             H  ++   KVFAK+ V C   +K  PI +++
Sbjct:  642 GVDHGDFQPDVLRDVDEAVRSGRDRKESKQGATAEVCDLGWSPTPEMLKGRRDYRSERIFTIDPTTAKDLDDALHIKPLPDGRVEVGVHIADVSHFVAPDTAVDLEASRRATTVYLVDRTIPMLPRPLCEIACSLNENVERLAFSCVWKMNMDGTMMKGKSSQKGKQKKKDDEVWYGRTVIKSCARLDYATAQNIIEGKIASGEKVEDLDDNLWPQSRRPTGGHTIDDVAGDVRLMHRVAQARRALRFQNGALALNGVKLAFQLGADGEAPELCEPYPIRDSNRLVEEYMLLANYLVAERLISHAGDRAVIRNHNPPLQKGLEDVVDVARESVGFHIDATSSQSLQESLSRMGRECNDELVMQCVTELAMVPMRPAEYLTAGHVEEEEWSHFALNIPYYTHFTSPIRRYADVMVHRLLQATIDGTIDEDDTLRNEAETQSSCEHCNEKRMASKKAQERSDRVFLSLFLLAKPIKNVLGVVLSVGEKTFTIFVPSLGLSTRAFVDEHKDRFEISLQGEDGKRQIMMQRKGGQVVGQGTDHRTSQVCAKVFAKLKVSCYCKEK-APIDVKV 1209          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A836CGT9_9STRA (RNB domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGT9_9STRA)

HSP 1 Score: 454 bits (1168), Expect = 6.360e-136
Identity = 273/545 (50.09%), Postives = 341/545 (62.57%), Query Frame = 3
Query: 1170 DSCLFFSRTGVDHGDFPQTVLRGLEAFLPKKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPAWFGRSVIRSCCKLDYATAQNMIEGAI-LPDS-ASSTAPELWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQS---GALSLNTPKLSFRLD--ENGNPA-------------EFAAYPIRDSNRLVEEYMLLANFLVAQ---QMLDGADDRA-------------------------FLRMHPPPPKKELEALKEVLARRGFELDVTSSASIQASLLRLRAQCSDEDIA-QVITIMVTIPMQTAKYVASGA--ADSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDAIAITADHCNDKKLAAKAAQERCDEVYLAVHV--ASNPL-VEEAVVMSIGEKSFTVNVPRLGVTSRIYLDKI 2639
            ++    S+ GV+HGDF  ++L  L+  L     +  D G    G  WKIP  E A RRDLR +RIFTIDP  ARDLDDAL +TP+ DGT EIGVHIADV++FV P  ELDREA+RRATT+YLVQ+A+PMLPPLLCE LCSLNP VDRL +S IWRMN DGTLV+GE  WFGR++IRSCC LDY T Q +IEG I LP   A S + E W+  RRPT       V +D+LLMH++A ARR  RF +   GALS+N  KLSFRL   + G P              +  AYPIRDSNRLVEEYMLLAN+LVA+   Q + GA D                            LR HPPP  ++L  + ++L   G E D  SSA++ ASL  L   C+   +  QV+  +V  PM+ A+Y+A+     + W H+ALNI  YTHFTSPIRRYAD+MVHR+L A L+    + Y  + +   A HCN+K+ A+K AQER D V+L  ++  AS P   E AVVMS G   FTV VP LGVT+R++L+ I
Sbjct:  401 ETTALLSQNGVNHGDFSPSLLHALDQLLL----NGQDAGGVDGG--WKIPASEAAVRRDLRDARIFTIDPPTARDLDDALHVTPLPDGTVEIGVHIADVSHFVPPGGELDREAQRRATTIYLVQRALPMLPPLLCERLCSLNPGVDRLAFSAIWRMNRDGTLVEGEEPWFGRTIIRSCCTLDYGTVQKVIEGEIALPACRAGSLSEEQWESARRPTGGHSLYAVAQDILLMHTIAAARRQLRFAASGGGALSMNRLKLSFRLRAVDTGRPLRLDSGIVDDNLALDMTAYPIRDSNRLVEEYMLLANYLVARRLVQAMPGAGDSXXXXXXXXXXXXXXXXXXXAVGGPGPLLRRHPPPQPRQLRQVCDLLKLCGVEFDGASSAAMNASLQALAQSCAPGSLLPQVVDNLVAGPMKPAQYIAAAKYPPNVWRHFALNIGCYTHFTSPIRRYADLMVHRLLGAILDERPAQ-YTTEEVEEVARHCNNKRDASKKAQERSDVVFLCAYLKRASPPRGPERAVVMSYGATGFTVFVPALGVTARLFLEDI 938          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A1E7FV50_9STRA (RNB-domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FV50_9STRA)

HSP 1 Score: 438 bits (1126), Expect = 1.180e-135
Identity = 243/554 (43.86%), Postives = 348/554 (62.82%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEAFLPKKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPAWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPELWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARR-GFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASG--AADSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTV---DETYQVDAIAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDIAA--TFDDVNNTLHLTASSTVTH---EWTEATIKVFAKVHVRCTVSDKEGPIRIELEFLRP 2816
            GVDHG+F   VL   +  +    ++ V T +      WK   D    R+D R  RIFTIDPT A+DLDDAL +T + +G  EIGVHIADV++F+ P+ E+D EA+RR TTVYLV + +PMLP  LCE  CSLN  V+RL +SC+WRMN DG+LV  +  W+GR+VI+SC +LDY+TAQN+IE  +     +    +LW  +RRPT       V  DV  M+ +A+ARR  RFQ+GA++L+  KL+F+LD++   P     YPIRDSN+LVEEYMLLAN+LVAQ+++     RA LR H PP  + L+   ++     GF +D+ SS S+Q SL RL  +C D  + Q IT ++  PM+ A Y+A+G  + + W H+AL+IP YTHFTSPIRRYADV+VHR+L A++E +    D   +V  I    + CN+KK  ++ AQER D V+LA+++   P  ++  +VMS+G  +FT+ +P +G+++ ++LD+  D      F+  N    +    T  H   +W E  IK F +V V C  +D+  P+ ++LE   P
Sbjct:   65 GVDHGEFTTHVLEESQRVVAS-GQYSVGTESG-----WKPTSDMYRGRKDYRNQRIFTIDPTTAKDLDDALHVTDLGNGQVEIGVHIADVSFFIPPDCEIDIEAQRRCTTVYLVDRTVPMLPRPLCEVACSLNENVERLAFSCVWRMNRDGSLVKDQEVWYGRTVIKSCARLDYSTAQNIIENKVAYPGENEIDEKLWPISRRPTGGHTTSQVANDVRFMNEIAQARRKLRFQNGAIALSAVKLTFKLDDDRETPLLCEPYPIRDSNKLVEEYMLLANYLVAQRLITHTGPRACLRNHEPPDPEGLQQAADLAMEAIGFNIDIESSESLQRSLNRLGRECQDPILLQCITELLKTPMKPANYIAAGEISDEGWAHFALHIPYYTHFTSPIRRYADVIVHRLLQASIEGSEAVEDFPMEVKEIGAICNTCNEKKDGSRKAQERSDAVFLALYLRRFPKKKQLGIVMSVGNTAFTLFLPAMGISAVVFLDEHKDWIEYKAFEVPNMGRRINLKRTQRHKGEQWNELLIKNFVRVWVSCGCTDR-APLNVKLELEGP 611          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A7S4QW54_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QW54_9STRA)

HSP 1 Score: 432 bits (1111), Expect = 8.780e-135
Identity = 241/511 (47.16%), Postives = 334/511 (65.36%), Query Frame = 3
Query: 1362 IFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPA------------WFGRSVIRSCCKLDYATAQNMIEGAILP-DSASSTAPELWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGNPAEFAA-YPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARR-GFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAADS--WLHYALNIPIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDAIAIT---ADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPD---IAATFDDVNNTLHL------TASSTVTHEWTEATIKVFAKVHVRCTVSDKEGPIRIEL 2801
            I  + PT A+DLDDAL I P+ DG  E+GVHIADV++FV P++ +D EA RRATTVYLV + IPMLP  LCE  CSLN  V+RL +SC+W+MN DGT++ G+ +            W+GR+VI+SC +LDYATAQN+IEG I   +        LW  +RRPT      DV  DV LMH +A+ARRA RFQ+GAL+LN  KL+F+L  +G   E    YPIRDSNRLVEEYMLLAN+LVA++++  A DRA +R H PP +K LE + +V     GF +D TSS S+Q SL R+  +C+DE + Q +T +  +PM+ A+Y+ +G  +   W H+ALNIP YTHFTSPIRRYADVMVHR+L AT++ T+DE   +   A T    +HCN+K++A+K AQER D V+L++ + + P+     VV+S+GEK+FT+ VP LG+++R ++D+  D   I+   +D    + +             H  ++   KVFAK+ V C   +K  PI +++
Sbjct:    4 IADVSPTTAKDLDDALHIKPLPDGRVEVGVHIADVSHFVAPDTAVDLEASRRATTVYLVDRTIPMLPRPLCEIACSLNENVERLAFSCVWKMNMDGTMMKGKSSQKGKQKKKDDEVWYGRTVIKSCARLDYATAQNIIEGKIASGEKVEDLDDNLWPQSRRPTGGHTIDDVAGDVRLMHRVAQARRALRFQNGALALNGVKLAFQLGADGEAPELCEPYPIRDSNRLVEEYMLLANYLVAERLISHAGDRAVIRNHNPPLQKGLEDVVDVARESVGFHIDATSSQSLQESLSRMGRECNDELVMQCVTELAMVPMRPAEYLTAGHVEEEEWSHFALNIPYYTHFTSPIRRYADVMVHRLLQATIDGTIDEDDTLRNEAETQSSCEHCNEKRMASKKAQERSDRVFLSLFLLAKPIKNVLGVVLSVGEKTFTIFVPSLGLSTRAFVDEHKDRFEISLQGEDGKRQIMMQRKGGQVVGQGTDHRTSQVCAKVFAKLKVSCYCKEK-APIDVKV 513          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A448YWE1_9STRA (RNB domain-containing protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YWE1_9STRA)

HSP 1 Score: 443 bits (1139), Expect = 3.880e-134
Identity = 256/563 (45.47%), Postives = 351/563 (62.34%), Query Frame = 3
Query: 1197 GVDHGDFPQTVLRGLEAFLPKKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPAWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPELWDPNRRPTE-FKCRDVCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELE-ALKEVLARRGFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAADS--WLHYALNIPIYTHFTSPIRRYADVMVHRILTATL--ENTVDE-TYQVDAIAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDI--AATFDDVNNTLHLTASSTVTHE---WTEATIKVFAKVHVRCTVSDKEGPIRIELEFLRPK*WSRWDID 2843
            GVDHG+FP  VL   +  +   A      G     S W+  +D    RRD R  RIFTIDPT A+DLDDAL IT + +G  EIGVHIADV++FV P+  +D EA+RR TTVYLV + IPMLP  LCE  CSLN  V+RL +SC+WRMN DG+LV G+  W+GR+VI+SC +LDY+TAQN+IE  +     +    ELW  +RRPT       V  DV LM+ +A+ARR  RF++GA++L+  KL+F+LD++   P     Y IRDSN+LVEEYMLLANFLVAQ+++     RA LR H PP  + LE A    +   GF +D+ SS ++Q SL RL  +C D  + + IT ++  PM+ A Y+A+G      W H+AL+IP YTHFTSPIRRYADV+VHR+L A++  E+ V++   +V  I+     CN+KK  ++ AQER D V+LA+++   P   + AVV SIG K+FTV +P LG+++ +YLD+      A  ++D      +    T TH+   W E  +K F ++ V C  SDK  P+ + L+   P     W+ D
Sbjct:  339 GVDHGEFPSHVLEESQTVV---ASGQYSNGTE---SGWRPTEDMYEGRRDYRNQRIFTIDPTTAKDLDDALHITDLGNGQIEIGVHIADVSFFVTPDCAIDVEAQRRCTTVYLVDRVIPMLPRPLCEVACSLNENVERLAFSCVWRMNRDGSLVKGQDVWYGRTVIKSCARLDYSTAQNIIENKVAYPGENEIDEELWPVSRRPTGGHTIGQVAADVRLMNEIAQARRRLRFRNGAVALDAVKLTFQLDDDRETPLLCEPYKIRDSNKLVEEYMLLANFLVAQRLITNTGPRACLRNHEPPDYEGLEKAAALAMEAIGFRIDIESSEAVQKSLNRLSQECQDPILLKCITELLKNPMKPATYIAAGTLSQPEWAHFALHIPYYTHFTSPIRRYADVIVHRLLQASIDGEDAVEDFPMEVKEISAICGTCNEKKEGSRKAQERSDAVFLALYLRKFPKKRQLAVVTSIGMKAFTVFLPHLGISAMVYLDEHKHWIEAEAYEDPKFGRRIKLKRTQTHKGERWKELLVKNFLRLRVTCGCSDKP-PLNVNLKLEGP-----WEGD 889          
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Match: A0A7S3Q719_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q719_9STRA)

HSP 1 Score: 436 bits (1120), Expect = 1.240e-129
Identity = 257/569 (45.17%), Postives = 350/569 (61.51%), Query Frame = 3
Query: 1200 VDHGDFPQTVLRGLEAFLP--KKAEHDVDTGAAVRGSRWKIPDDEIAKRRDLRKSRIFTIDPTGARDLDDALSITPMADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLLCEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEP--------AWFGRSVIRSCCKLDYATAQNMIEGAILPDSASSTAPE-LWDPNRRPTEFKCRD-VCEDVLLMHSLAKARRAKRFQSGALSLNTPKLSFRLDENGN-PAEFAAYPIRDSNRLVEEYMLLANFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARRGFELDVTSSASIQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGA--ADSWLHYALNIPIYTHFTSPIRRYADVMVHRILTATL---ENTVDETYQV--DAIAITADHCNDKKLAAKAAQERCDEVYLAVHVASNPLVEE-AVVMSIGEKSFTVNVPRLGVTSRIYLDKIPDIAATFDD--VNNT---------LHLTASSTVTHEWTEATIKVFAKVHVRCTVSDKEGPIRIELEFL 2810
            VDHG+F  +VL+ +E  +   +    +  + +      W    +    RRD R  RIFTIDPT A+DLDDAL I P++DG  EIGVHIADV++F+   S +D+EA RR TTVYLV + IPMLP  LCE  CSLN  V+RL +SC+W MN DGT+              W+GR+VI+SC +LDYATAQN+I+G +          E  W  +R PT     D V  DV LMHS+A ARR  RF++GAL+LN  KL+F++ E+G  PA  A YPIRDSNRL+EEYML+AN+LVAQ+++  A   A LR H PP +  +E +  +   +GFE+D TSS S+Q SL R+  +C+D    Q IT +   PM+ A+Y+A+G   A+ W H+ALNIP YTHFTSPIRRY DV+VHR+L ATL   E   D   +   + I     HCNDK++ +K AQER D ++L++ + SNP+     VV+SIGEK+FTV VP +G++  +YLDK  D   TF+   +NN          + L  SS +        IK+F+K+ + C   + E PI + L+ +
Sbjct:  502 VDHGEFDASVLQDVENSVRSGRLGVDETSSESTAEDLGWAPTPEMYEGRRDYRNERIFTIDPTTAKDLDDALHIKPLSDGRVEIGVHIADVSHFLAHGSNVDQEASRRTTTVYLVDRVIPMLPRPLCEIACSLNENVERLAFSCVWIMNRDGTMAQKRSKSGSKENDVWYGRTVIKSCARLDYATAQNIIDGKVAHGEKVENIDESFWPKSRLPTAPHTIDGVAHDVRLMHSVAMARRKLRFENGALALNGIKLTFQMAEDGETPALCAPYPIRDSNRLIEEYMLMANYLVAQRLITHAGGLALLRQHQPPLELGMEKVIGMAKEKGFEIDGTSSKSLQESLSRMARECNDTLTMQCITELFMAPMKPAEYIAAGGFDAEDWSHFALNIPYYTHFTSPIRRYPDVLVHRLLQATLGGPEAVSDYATKQSQEEIQTICTHCNDKRMKSKKAQERSDRIFLSIFLKSNPIASTLGVVVSIGEKAFTVFVPSIGISGLVYLDKHQD---TFNVRILNNEKSKNREMMLIPLDGSSPID-------IKIFSKISIGCYCKE-EPPIDVTLKVV 1059          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12480.2020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JM24_9PHAE8.940e-30479.20RNB domain-containing protein n=2 Tax=Ectocarpus T... [more]
A0A7S2KY36_9STRA6.000e-14145.60Hypothetical protein n=1 Tax=Skeletonema marinoi T... [more]
B8C1F9_THAPS2.180e-14049.20Ribonuclease (Fragment) n=1 Tax=Thalassiosira pseu... [more]
B7FWN1_PHATC2.440e-14050.51Predicted protein (Fragment) n=2 Tax=Phaeodactylum... [more]
A0A7S4QYK5_9STRA2.700e-13946.40Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A836CGT9_9STRA6.360e-13650.09RNB domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A1E7FV50_9STRA1.180e-13543.86RNB-domain-containing protein n=1 Tax=Fragilariops... [more]
A0A7S4QW54_9STRA8.780e-13547.16Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A448YWE1_9STRA3.880e-13445.47RNB domain-containing protein n=1 Tax=Pseudo-nitzs... [more]
A0A7S3Q719_9STRA1.240e-12945.17Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12480contigL-elsbetiae_contig12480:39..5439 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score771.5
Seed ortholog evalue2.2e-220
Seed eggNOG ortholog2880.D8LBE7
KEGG koko:K18758
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000175,GO:0000178,GO:0000278,GO:0000280,GO:0000287,GO:0000291,GO:0000819,GO:0000932,GO:0000956,GO:0003674,GO:0003676,GO:0003723,GO:0003727,GO:0003824,GO:0004518,GO:0004527,GO:0004532,GO:0004540,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005844,GO:0006139,GO:0006364,GO:0006396,GO:0006401,GO:0006402,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0008150,GO:0008152,GO:0008187,GO:0008266,GO:0008285,GO:0008408,GO:0009056,GO:0009057,GO:0009892,GO:0009987,GO:0010467,GO:0010468,GO:0010586,GO:0010587,GO:0010605,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016072,GO:0016787,GO:0016788,GO:0016796,GO:0016896,GO:0019222,GO:0019439,GO:0019827,GO:0022402,GO:0022613,GO:0032501,GO:0032502,GO:0032991,GO:0034427,GO:0034470,GO:0034641,GO:0034655,GO:0034660,GO:0034661,GO:0035770,GO:0036464,GO:0042127,GO:0042254,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0046700,GO:0046872,GO:0048285,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0051276,GO:0051304,GO:0051306,GO:0060255,GO:0065007,GO:0071704,GO:0071840,GO:0090304,GO:0090305,GO:0090501,GO:0090503,GO:0097159,GO:0098727,GO:0098813,GO:0140014,GO:0140098,GO:1901360,GO:1901361,GO:1901363,GO:1901575,GO:1902494,GO:1903047,GO:1905354,GO:1990074,GO:1990904
EggNOG free text desc.3'-5'-exoribonuclease activity
EggNOG OGsCOG0557@1,KOG2102@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03019
Ec32 ortholog descriptionRrp44 is a component of the exosome 3'->5' exoribonuclease complex, a complex that degrades mRNAs.
Ec32 orthologEc-27_004230.1
Exons8
Model size3911
Cds size1401
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12480.2020.1prot_L-elsbetiae_contig12480.2020.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12480 1460..4350 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.193235-UTR-L-elsbetiae_contig12480:38..14591622815442.193235-UTR-L-elsbetiae_contig12480:38..1459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12480 39..1459 +
1691682900.1378417-UTR-L-elsbetiae_contig12480:38..14591691682900.1378417-UTR-L-elsbetiae_contig12480:38..1459Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12480 39..1459 +
1622815442.2997723-UTR-L-elsbetiae_contig12480:4350..54391622815442.2997723-UTR-L-elsbetiae_contig12480:4350..5439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12480 4351..5439 +
1691682900.2391334-UTR-L-elsbetiae_contig12480:4350..54391691682900.2391334-UTR-L-elsbetiae_contig12480:4350..5439Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12480 4351..5439 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.205178-CDS-L-elsbetiae_contig12480:1459..15821622815442.205178-CDS-L-elsbetiae_contig12480:1459..1582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 1460..1582 +
1691682900.1481764-CDS-L-elsbetiae_contig12480:1459..15821691682900.1481764-CDS-L-elsbetiae_contig12480:1459..1582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 1460..1582 +
1622815442.2186363-CDS-L-elsbetiae_contig12480:1770..20271622815442.2186363-CDS-L-elsbetiae_contig12480:1770..2027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 1771..2027 +
1691682900.158114-CDS-L-elsbetiae_contig12480:1770..20271691682900.158114-CDS-L-elsbetiae_contig12480:1770..2027Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 1771..2027 +
1622815442.2316196-CDS-L-elsbetiae_contig12480:2189..23911622815442.2316196-CDS-L-elsbetiae_contig12480:2189..2391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 2190..2391 +
1691682900.175424-CDS-L-elsbetiae_contig12480:2189..23911691682900.175424-CDS-L-elsbetiae_contig12480:2189..2391Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 2190..2391 +
1622815442.2455173-CDS-L-elsbetiae_contig12480:2637..26761622815442.2455173-CDS-L-elsbetiae_contig12480:2637..2676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 2638..2676 +
1691682900.184081-CDS-L-elsbetiae_contig12480:2637..26761691682900.184081-CDS-L-elsbetiae_contig12480:2637..2676Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 2638..2676 +
1622815442.2602832-CDS-L-elsbetiae_contig12480:3070..31311622815442.2602832-CDS-L-elsbetiae_contig12480:3070..3131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3071..3131 +
1691682900.1924305-CDS-L-elsbetiae_contig12480:3070..31311691682900.1924305-CDS-L-elsbetiae_contig12480:3070..3131Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3071..3131 +
1622815442.2701173-CDS-L-elsbetiae_contig12480:3269..33941622815442.2701173-CDS-L-elsbetiae_contig12480:3269..3394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3270..3394 +
1691682900.2017567-CDS-L-elsbetiae_contig12480:3269..33941691682900.2017567-CDS-L-elsbetiae_contig12480:3269..3394Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3270..3394 +
1622815442.2798712-CDS-L-elsbetiae_contig12480:3589..38681622815442.2798712-CDS-L-elsbetiae_contig12480:3589..3868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3590..3868 +
1691682900.213572-CDS-L-elsbetiae_contig12480:3589..38681691682900.213572-CDS-L-elsbetiae_contig12480:3589..3868Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 3590..3868 +
1622815442.2898135-CDS-L-elsbetiae_contig12480:4035..43501622815442.2898135-CDS-L-elsbetiae_contig12480:4035..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 4036..4350 +
1691682900.2284062-CDS-L-elsbetiae_contig12480:4035..43501691682900.2284062-CDS-L-elsbetiae_contig12480:4035..4350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12480 4036..4350 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12480.2020.1

>prot_L-elsbetiae_contig12480.2020.1 ID=prot_L-elsbetiae_contig12480.2020.1|Name=mRNA_L-elsbetiae_contig12480.2020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=467bp
MADGTFEIGVHIADVTYFVRPNSELDREARRRATTVYLVQQAIPMLPPLL
CEELCSLNPMVDRLTYSCIWRMNGDGTLVDGEPAWFGRSVIRSCCKLDYA
TAQNMIEGAILPDSASSTAPELWDPNRRPTEFKCRDVCEDVLLMHSLAKA
RRAKRFQSGALSLNTPKLSFRLDENGNPAEFAAYPIRDSNRLVEEYMLLA
NFLVAQQMLDGADDRAFLRMHPPPPKKELEALKEVLARRGFELDVTSSAS
IQASLLRLRAQCSDEDIAQVITIMVTIPMQTAKYVASGAADSWLHYALNI
PIYTHFTSPIRRYADVMVHRILTATLENTVDETYQVDAIAITADHCNDKK
LAAKAAQERCDEVYLAVHVASNPLVEEAVVMSIGEKSFTVNVPRLGVTSR
IYLDKIPDIAATFDDVNNTLHLTASSTVTHEWTEATIKVFAKVHVRCTVS
DKEGPIRIELEFLRPK*
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mRNA from alignment at L-elsbetiae_contig12480:39..5439+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12480.2020.1 ID=mRNA_L-elsbetiae_contig12480.2020.1|Name=mRNA_L-elsbetiae_contig12480.2020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5401bp|location=Sequence derived from alignment at L-elsbetiae_contig12480:39..5439+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGGCGGCGGGTGTTGTTGTACCATACTGCATCTAGCTGCATGGTTGCC TACGTTTGGTGTGTGTGATCTATGTATCTAGATCCAAACAAGGCATTGTA TGTATGTATGGACGTACATGTGTAGATAAATAATGTATGCACATCATAGA TATTTAGATAGATGTACATCCATCCTCCCTTCCTTGTATCCGTTACATGA ACGTCCTCTAGCTACCTTAGTGACATCTACACATTTTGTCGCCGCCATTA CTACACATAGTACATGCAATTTTATTTATGCACTCGGACTTTCAGAGTGC CCTCTGCCTTCCTCCACCCATCCTATATCATCTTGTTTCAATCTCCCAAA AACGTTACATACAGTACCTACTTTGTGAGGGTACATACAGCAGTAGTAGT AGTAGTGGCGTTCGTTGTAGTCGATCGAGTCTAACTAACCCTAACCCTAA CCCTACATGAATAATAGATGCATGTCCTCTCTCCCGAATGCCTCTCTTCT CCTTTCTTCTTTACAGCAGCAGCATCAGTAAGCATTATTTCCAAAAAAAG ATAGGGGATTTTAGACGAGGCTGGGCTACCCCAGGCGATTTCAGTTTCTA TACCCTCAGGGTATTGGCCTCTGTATGGGCAGCAGACGCTGAAGTTCCTC TCGTTTGGCACGATCGATTACCTTTATCCGTATGGTCACTCAAATTTTAC TTTTCCCTCAAATCGAAGACCCCTAAAAATTGACCCCCCTTCATATTCGC GAATCCGTGAATTATTAATGCCTCTGTGCTTTCCGCAGAAATCACTGAAT TAATTCCAAGGATATTTTTGCTTCGTTTAGGACGACCCTAAGTGTACGCT CCTCTCGGGTATTGGAGATTTCTCGGCACGGTGTTAGGCAAACTGCTGGT GCGTTTTTGAAACGAAAAATCAAAGAAAAAAACTCCCCAAAGAGATGAGA CTTCGTGGTGAATGGACAGTTCAATGCAGTGATGTAATATTGGTCCGGCC AAGCAAACATATAAAACATCAGAGCAGTTCAAAACCTCCCCTGCATATCT CTGCCAGGCCAATCAGCTAACATTCCGGGGAAAAGCCCACCGTAATGCCG TGGTCTTGTTACGTCCCAGTGTCTGACTAAAAGTCAAAAGTGCTGGTGCG TTTTTACTAATTGCTACCCGACTCTTGTTTATTCTTCTCTCGAACAGGTG TAGACCACGGAGATTTCCCACAGACTGTTCTACGGGGTCTTGAAGCCTTC CTGCCGAAAAAGGCGGAGCACGATGTCGACACCGGAGCGGCGGTCAGGGG GTCCAGATGGAAAATCCCAGACGACGAGATAGCCAAACGGCGTGATTTGC GAAAGTCTCGCATCTTTACCATCGACCCAACTGGTGCTCGCGATCTTGAC GATGCGCTTTCCATAACCCCCATGGCGGATGGGACGTTCGAAATCGGGGT TCACATTGCCGATGTGACGTACTTTGTTCGCCCCAACAGTGAACTCGACC GCGAGGCCCGACGGCGAGCCACTACGGTCTACCTTGTCCAGCAGGCAAGA AGAGTCTGACGCGTCAAGATAGACACCGCAAGTGATGGTTTTCAAATGTC GCCCATTGTAAACGCCTCACGAACATTGTGCGAGTTTCCCCCCAACCTCC TCATCGTCGCTCGCAATACACCCATCCCGTCTTGTGACTTTCGGATTTTG CCTCCCTGGTCTGTGGTTCGATTGTCTGGCAGGCGATCCCAATGCTGCCA CCGCTGCTCTGCGAAGAGCTTTGTAGCCTCAATCCTATGGTAGATCGGCT CACCTACTCGTGCATCTGGCGCATGAACGGTGATGGCACTCTTGTGGACG GAGAGCCTGCCTGGTTCGGACGAAGTGTGATCAGGTCCTGCTGCAAGTTA GACTATGCGACAGCACAAAACATGATCGAAGGAGCCATCCTCCCCGACAG CGCGTCGTCGACCGCACCTGAGCTTTGGGATCCCAACAGGCAAGGAGGGC CTTAATGCATGCGCCCATGGTATATACGTATATACCATGCCACGAGGATC GCAGAAAATCAGGTGTCTCTTGCATGCATAGTGCCCGCTCGCCTGGTTAT GCTGGATGTTCTCTCGGTCCTGATGTTTCACTTCGCTTCTCCACTTGCCA GGCGACCCACAGAGTTCAAGTGCCGTGACGTCTGCGAGGACGTTTTGCTC ATGCACTCCCTTGCGAAGGCGCGGCGAGCAAAGCGATTCCAGAGCGGAGC CCTTTCACTCAACACCCCCAAGCTCTCGTTCCGACTCGACGAAAACGGGA ACCCCGCAGAGTTTGCAGCTTACCCAATAAGAGACTCCAACCGACTTGTT GAGGTGGGAATTTCACCGATTTCGACTGCATTTGTCGGTTTAACTCGGAA ACTGAAAAGGAAATAAATGGCCACCAACGTGTTTTTTTTGTCGGAAAAGG CACAATCTTCGCCTTGCGATGTTTCACTGCTGAACGAGCTCTGATGTGCT TCAGTCAAGTGTCGTTTGTTGCTCGAGAGTCGGTGGGCAGACGTGACGCA AAATCGCCTCTCACATGCAAGTGTCGCTGTTTGTGTCACCGGTGCGCAGG AATACATGCTCCTGGCCAATTTCCTGGTGGCGCAACAGGTGCGGGTCAAG CTTGGTGTGTTGTCTTTGAGGAAAGCAGAGGGTGCCTTTTTTTGCTGTGC ATAGCGCTACACCAGCTGACCTGTGCCCGACCCCTGAGAATACCTGACAG CAGGCTAGCTCGCATATGGTCGTGTACTTATCCCAGGACTTCTTGCGATT CCAGCGTAAGCCTAGCTGATGTGCGCTGCCCCTGCTGCCTGGGTATGCAG CTTCTCCTGTAAACAGCGCTAGCAAGACGCTTTACCATTGCGCCGAGACC GCGTTGTGTTGATGAGTACAGGGCCTTTCGAACGCCTTTCTGTGTGTGGC ACGCCAGCGTAAAGTTGGTGCGAAATACTAAACCCTATGAATGCGACTTG TTTATCAATCTTCTTCGCCCGGTGTATCTCAGATGTTGGATGGAGCAGAT GATCGAGCGTTTCTTCGTATGCATCCACCGCCTCCCAAGAAAGGTACGGG CGGTGTGTCACTTGCGAAGTGCCCTGCAAGTAGTAATCCTACATTTCTGC GCGGATAGTATAGGTGTGTGCGTTTTTTGCTTGAGTGCGTTTGTTTGTGC TGCGTGCTCTTGCTTGGGTGAATAAACGCAGAACTCGAAGCTCTCAAGGA AGTTCTGGCGAGACGCGGCTTCGAACTGGACGTGACGTCATCAGCGTCGA TTCAGGCCTCGCTTCTTCGTCTTCGTGCCCAGTGCAGCGACGAGGACATC GCCCAGGTGGGTTGCACTCGCCCAGCCTCGTGTAGCCGACGGCGGGAAAT GTGGTTTCGCAGAACCCGCGCGAAGGTTCACCCGAAAACTGTCCCAGAGA AGAAAACTGCAGTCTTTTAACTTGATGTCTTGTTCGTATTCAACTCTCTT TTTACTCTCTTTTTTTACACGGTGCGCCCGCTCATGAACTTCATTGCCCA GGTGATCACGATCATGGTGACCATTCCGATGCAAACTGCAAAATATGTCG CTTCGGGAGCAGCAGACTCTTGGCTCCACTACGCTTTAAACATCCCGATC TACACGCACTTCACCAGCCCAATTCGAAGATATGCGGACGTCATGGTACA TCGAATTCTCACCGCAACGCTAGAGAATACTGTTGACGAGACATACCAGG TGGATGCCATCGCCATTACAGCTGATCACTGCAACGATAAAAAGCTGGCA GCGAAGGCGGCGCAAGAACGATGTGATGAGGTAAGTAGTTGTGTTTTCGT GCCAACTCTGAACGAGCGCTCAGTGTCAGCCACCAAAGAGCTTTGATTGT GTGGCATTCCGAAATGTATACCCATGATTATTCTGGGGTATGGCCTGAAC ATTCTCCACCATTATCTTAGCACTGCATCGTGCGCTTTTTTGTTCAGGTC TACCTAGCAGTGCACGTCGCCTCCAACCCGCTGGTAGAGGAGGCCGTGGT GATGTCCATCGGCGAGAAGTCCTTCACGGTGAACGTTCCACGGCTAGGGG TGACGTCCCGGATTTACCTCGACAAGATCCCAGACATCGCGGCGACTTTT GATGACGTGAACAATACCTTGCATCTCACTGCATCATCAACGGTCACCCA CGAGTGGACTGAAGCAACCATCAAAGTGTTTGCGAAAGTGCATGTGCGTT GCACGGTGTCAGACAAGGAAGGACCGATCCGGATCGAGCTAGAGTTTTTG CGGCCTAAATAATGGTCGCGATGGGACATCGACAAAATATTACTGCCGGG GGGGTCGTTGTGGCTCATGGCGAAGTGTCTTGTTATGGCTCTCTGACTGT CAAGCCAGGATTTTTAGAATGTCTTCGAAGTCTGAACTCGAGTGTTGGTG TGAGCCCAGGGATATCACGATTTTCATTGACGTTTTGCGTGCGGCGAATG TGTGCGATATAATGAGTCTTGGCGCACGGCGGGGATACGGAGATCTCAAA ACGTAAAAATCGACAGGAAAGAAGGTACAGAGTGGACTTTTCCGAACGGA ACTTGTTTAAGTGGCGAAAATGTGTGTGGATTGCCAATTTCGCATCTTTG GTTAGAAGTTTTGTCAGCTTCCCGAAAATAACGTTGTGTTTCCGGGCGCT TGTCGGCCTCCAGCGTCAACTCGACAGCGCCACAGCAAACTTTCACCCAG AACGGCAAGAACCTACGAAGGAGCACTCGATAAATCGATTGTGATGGCAC GATATACCCGGGTGTGTCTGAGTAGTTATGTCTACGGCGGCCACAGCAGG AGGAACAGCTTGCAACAACATGAAATATGCCAGCTCGATACAAGCTGGAT TGAGCAAGCAGCTCACGCCCACAAAATGGTTGGCTTGGATTTCCTACTCG ATTTTTGCGAATTATTTAGAACCTGATGTTTTTTTACGTGTTGGGTACGG CTAAGTAGAACAAAGGTCTTGTGACCTCACACATTTGATTTTTTCTTTTT TTTTTCCGCGAGTTAGCCTTGATGAACTGAATTATACATTTTTGTTTGGG GACAAAGTGGCATACAAATATAAAATAGTCAAAAGTTGGGGTCATGGTTT CCTCGGGCAAGGGCGATCCAAATCACGAGTCTAAAATTCAGGCTCTATTT CGTAAAAATCGCGTGGGAAACCGAGATATTCTCACATCTGTGCCCAGTAT ACTTATGGTCATTTTAATCGTTCCGAATTTTCGGAACGACGTTCCAAAGT TCCGAATATTCGGAACTTGTAGGCAGGCGTTCTTCTGAATTTTTTCCAAA TATTTGGAACGCAATCGGGCTGTTTTTTTTGGAACGATTGACTTCCGACT T
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12480:39..5439+

>mRNA_L-elsbetiae_contig12480.2020.1 ID=mRNA_L-elsbetiae_contig12480.2020.1|Name=mRNA_L-elsbetiae_contig12480.2020.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2802bp|location=Sequence derived from alignment at L-elsbetiae_contig12480:39..5439+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGATGGGACGTTCGAAATCGGGGTTCACATTGCCGATGTGACGTA
CTTTGTTCGCCCCAACAGTGAACTCGACCGCGAGGCCCGACGGCGAGCCA
CTACGGTCTACCTTGTCCAGCAGATGGCGGATGGGACGTTCGAAATCGGG
GTTCACATTGCCGATGTGACGTACTTTGTTCGCCCCAACAGTGAACTCGA
CCGCGAGGCCCGACGGCGAGCCACTACGGTCTACCTTGTCCAGCAGGCGA
TCCCAATGCTGCCACCGCTGCTCTGCGAAGAGCTTTGTAGCCTCAATCCT
ATGGTAGATCGGCTCACCTACTCGTGCATCTGGCGCATGAACGGTGATGG
CACTCTTGTGGACGGAGAGCCTGCCTGGTTCGGACGAAGTGTGATCAGGT
CCTGCTGCAAGTTAGACTATGCGACAGCACAAAACATGATCGAAGGAGCC
ATCCTCCCCGACAGCGCGTCGTCGACCGCACCTGAGCTTTGGGATCCCAA
CAGGCGATCCCAATGCTGCCACCGCTGCTCTGCGAAGAGCTTTGTAGCCT
CAATCCTATGGTAGATCGGCTCACCTACTCGTGCATCTGGCGCATGAACG
GTGATGGCACTCTTGTGGACGGAGAGCCTGCCTGGTTCGGACGAAGTGTG
ATCAGGTCCTGCTGCAAGTTAGACTATGCGACAGCACAAAACATGATCGA
AGGAGCCATCCTCCCCGACAGCGCGTCGTCGACCGCACCTGAGCTTTGGG
ATCCCAACAGGCGACCCACAGAGTTCAAGTGCCGTGACGTCTGCGAGGAC
GTTTTGCTCATGCACTCCCTTGCGAAGGCGCGGCGAGCAAAGCGATTCCA
GAGCGGAGCCCTTTCACTCAACACCCCCAAGCTCTCGTTCCGACTCGACG
AAAACGGGAACCCCGCAGAGTTTGCAGCTTACCCAATAAGAGACTCCAAC
CGACTTGTTGAGGCGACCCACAGAGTTCAAGTGCCGTGACGTCTGCGAGG
ACGTTTTGCTCATGCACTCCCTTGCGAAGGCGCGGCGAGCAAAGCGATTC
CAGAGCGGAGCCCTTTCACTCAACACCCCCAAGCTCTCGTTCCGACTCGA
CGAAAACGGGAACCCCGCAGAGTTTGCAGCTTACCCAATAAGAGACTCCA
ACCGACTTGTTGAGGAATACATGCTCCTGGCCAATTTCCTGGTGGCGCAA
CAGGAATACATGCTCCTGGCCAATTTCCTGGTGGCGCAACAGATGTTGGA
TGGAGCAGATGATCGAGCGTTTCTTCGTATGCATCCACCGCCTCCCAAGA
AAGATGTTGGATGGAGCAGATGATCGAGCGTTTCTTCGTATGCATCCACC
GCCTCCCAAGAAAGAACTCGAAGCTCTCAAGGAAGTTCTGGCGAGACGCG
GCTTCGAACTGGACGTGACGTCATCAGCGTCGATTCAGGCCTCGCTTCTT
CGTCTTCGTGCCCAGTGCAGCGACGAGGACATCGCCCAGAACTCGAAGCT
CTCAAGGAAGTTCTGGCGAGACGCGGCTTCGAACTGGACGTGACGTCATC
AGCGTCGATTCAGGCCTCGCTTCTTCGTCTTCGTGCCCAGTGCAGCGACG
AGGACATCGCCCAGGTGATCACGATCATGGTGACCATTCCGATGCAAACT
GCAAAATATGTCGCTTCGGGAGCAGCAGACTCTTGGCTCCACTACGCTTT
AAACATCCCGATCTACACGCACTTCACCAGCCCAATTCGAAGATATGCGG
ACGTCATGGTACATCGAATTCTCACCGCAACGCTAGAGAATACTGTTGAC
GAGACATACCAGGTGGATGCCATCGCCATTACAGCTGATCACTGCAACGA
TAAAAAGCTGGCAGCGAAGGCGGCGCAAGAACGATGTGATGAGGTGATCA
CGATCATGGTGACCATTCCGATGCAAACTGCAAAATATGTCGCTTCGGGA
GCAGCAGACTCTTGGCTCCACTACGCTTTAAACATCCCGATCTACACGCA
CTTCACCAGCCCAATTCGAAGATATGCGGACGTCATGGTACATCGAATTC
TCACCGCAACGCTAGAGAATACTGTTGACGAGACATACCAGGTGGATGCC
ATCGCCATTACAGCTGATCACTGCAACGATAAAAAGCTGGCAGCGAAGGC
GGCGCAAGAACGATGTGATGAGGTCTACCTAGCAGTGCACGTCGCCTCCA
ACCCGCTGGTAGAGGAGGCCGTGGTGATGTCCATCGGCGAGAAGTCCTTC
ACGGTGAACGTTCCACGGCTAGGGGTGACGTCCCGGATTTACCTCGACAA
GATCCCAGACATCGCGGCGACTTTTGATGACGTGAACAATACCTTGCATC
TCACTGCATCATCAACGGTCACCCACGAGTGGACTGAAGCAACCATCAAA
GTGTTTGCGAAAGTGCATGTGCGTTGCACGGTGTCAGACAAGGAAGGACC
GATCCGGATCGAGCTAGAGTTTTTGCGGCCTAAATAAGTCTACCTAGCAG
TGCACGTCGCCTCCAACCCGCTGGTAGAGGAGGCCGTGGTGATGTCCATC
GGCGAGAAGTCCTTCACGGTGAACGTTCCACGGCTAGGGGTGACGTCCCG
GATTTACCTCGACAAGATCCCAGACATCGCGGCGACTTTTGATGACGTGA
ACAATACCTTGCATCTCACTGCATCATCAACGGTCACCCACGAGTGGACT
GAAGCAACCATCAAAGTGTTTGCGAAAGTGCATGTGCGTTGCACGGTGTC
AGACAAGGAAGGACCGATCCGGATCGAGCTAGAGTTTTTGCGGCCTAAAT
AA
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