mRNA_L-elsbetiae_contig12478.2018.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12478.2018.1
Unique NamemRNA_L-elsbetiae_contig12478.2018.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12478.2018.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12478contigL-elsbetiae_contig12478:1884..3094 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size283
Cds size279
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815442.0417204-CDS-L-elsbetiae_contig12478:1885..20221622815442.0417204-CDS-L-elsbetiae_contig12478:1885..2022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12478 1886..2022 -
1691682900.0303383-CDS-L-elsbetiae_contig12478:1885..20221691682900.0303383-CDS-L-elsbetiae_contig12478:1885..2022Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12478 1886..2022 -
1622815442.0513234-CDS-L-elsbetiae_contig12478:2952..30941622815442.0513234-CDS-L-elsbetiae_contig12478:2952..3094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12478 2953..3094 -
1691682900.04097-CDS-L-elsbetiae_contig12478:2952..30941691682900.04097-CDS-L-elsbetiae_contig12478:2952..3094Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12478 2953..3094 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12478.2018.1prot_L-elsbetiae_contig12478.2018.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12478 1886..3094 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12478.2018.1

>prot_L-elsbetiae_contig12478.2018.1 ID=prot_L-elsbetiae_contig12478.2018.1|Name=mRNA_L-elsbetiae_contig12478.2018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
RASGATAATGAPSPWGTSVEYWSGGSGSEAEDDDDEDNDDEEDDDGEEGQ
RRRKRRRGRRGWGGNRASKLGGGERLRRGELLADEEEELEEER
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mRNA from alignment at L-elsbetiae_contig12478:1884..3094-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12478.2018.1 ID=mRNA_L-elsbetiae_contig12478.2018.1|Name=mRNA_L-elsbetiae_contig12478.2018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1211bp|location=Sequence derived from alignment at L-elsbetiae_contig12478:1884..3094- (Laminarionema elsbetiae ELsaHSoW15)
AGAGCGTCCGGTGCGACGGCGGCGACGGGGGCACCGTCGCCGTGGGGCAC
GTCGGTGGAGTACTGGTCGGGGGGTTCGGGCAGCGAGGCTGAGGATGATG
ACGATGAGGATAACGATGATGAGGAGGATGACGATGGCGAAGGTGAGACC
TGGGGCTCGCTCTCTCTCTCTTTGTGAGGAGAATTTGTGGGATCTTTGGT
TTTGGTCTGCGGCCGTCCCATTCTGGCAACTGCTGTGTACACTTGGAAGG
AGTTTTGAGAGGGGGTGCACAGGGGAGGAAGGAAAAATACTCATGTAGGA
CTGTTGCGGTAAGGGGGGAGCGGAGACGAGGATTAAGGCAAGCGTATGCA
GGACCGCTCTGTTGGCGTGTTGGTTCTGGCAATGCCCTCCTCCAATAGTG
TGGGTTTTTGATCGTGGTCTGCACTGCTGTACATCGTCTGGCCCCGCTTT
TCCCCACGATATGTACATATATACATACGCAGGTGCAGCAACGGTTTGGG
GTCTGGTGGTGTGTGATGTGGATTCGGTTGGGTCGTGTGTGTGTGTGTTT
GTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGACAGTCCCCCCAAGTG
GAGATGTGTACTACACCTTGCGGTGTACTTAGAGGCTTAGAGGTACTACA
CTTTGCAGTGCATTTGTCTGTACAACTAGAACCAACCAAGGTCACACAGG
AGGAGGTGAACACTGGGGCTTTTTCTTCTTTTTTATTTACTTTTTTTGCC
CCACCTTCCTCCTGCGGTTCTTGCCTTGGGTTTTATCGCGAGAAGGATTC
AGCTGTTTGGGTCGTGGAAAATAATAATATATACATACATAGCTGCCGGA
TGATTTTTTAATTCTTGAATGATGTGTGTGTATTTTTTGCTGACGAGTTC
GTTTTGCCGGGGTTCGAATCGTGCCCCACGGTCAGTCACGATCACGGACT
TGTCGAACGCTAAGCGGCGGATGAGATCACCTCTTACCTGATTGCCGGAC
CCTAAGGATGGGTGATGATGGACATATAACACACCACCCCCGCCTCCCGT
TTTCTCGCTTCCTTATTCCCAGAAGGGCAGCGGCGAAGGAAGAGGCGCCG
GGGGCGCCGTGGATGGGGCGGGAACCGTGCCTCCAAGCTCGGCGGGGGCG
AGCGGCTGAGGCGAGGAGAGCTGTTGGCAGACGAGGAGGAGGAATTAGAA
GAAGAGCGGCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12478:1884..3094-

>mRNA_L-elsbetiae_contig12478.2018.1 ID=mRNA_L-elsbetiae_contig12478.2018.1|Name=mRNA_L-elsbetiae_contig12478.2018.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig12478:1884..3094- (Laminarionema elsbetiae ELsaHSoW15)
AGAGCGTCCGGTGCGACGGCGGCGACGGGGGCACCGTCGCCGTGGGGCAC
GTCGGTGGAGTACTGGTCGGGGGGTTCGGGCAGCGAGGCTGAGGATGATG
ACGATGAGGATAACGATGATGAGGAGGATGACGATGGCGAAGAGAGCGTC
CGGTGCGACGGCGGCGACGGGGGCACCGTCGCCGTGGGGCACGTCGGTGG
AGTACTGGTCGGGGGGTTCGGGCAGCGAGGCTGAGGATGATGACGATGAG
GATAACGATGATGAGGAGGATGACGATGGCGAAGAAGGGCAGCGGCGAAG
GAAGAGGCGCCGGGGGCGCCGTGGATGGGGCGGGAACCGTGCCTCCAAGC
TCGGCGGGGGCGAGCGGCTGAGGCGAGGAGAGCTGTTGGCAGACGAGGAG
GAGGAATTAGAAGAAGAGCGGAAGGGCAGCGGCGAAGGAAGAGGCGCCGG
GGGCGCCGTGGATGGGGCGGGAACCGTGCCTCCAAGCTCGGCGGGGGCGA
GCGGCTGAGGCGAGGAGAGCTGTTGGCAGACGAGGAGGAGGAATTAGAAG
AAGAGCGG
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