mRNA_L-elsbetiae_contig12468.2010.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12468.2010.1
Unique NamemRNA_L-elsbetiae_contig12468.2010.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 8.450e-33
Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 1
Query:   31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255
            GVQNLIHD NKKVRTAFV LLL VKGVKSI+YYQVA VDHILARLSEDH +CPASA GLSKLILNSYFPTG   T
Sbjct:  408 GVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDHAKCPASASGLSKLILNSYFPTGSGVT 482          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI)

HSP 1 Score: 125 bits (314), Expect = 1.390e-31
Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 1
Query:   31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255
            GVQNLIHD NKKVRTAFV LLL VKGVKSI+YYQVA VDHILARLSED  +CPASA GLSKLILNSYFPTG   T
Sbjct:  537 GVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDDAKCPASASGLSKLILNSYFPTGSGVT 611          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.620e-11
Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1
Query:   43 LIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGL 246
            L+HD +++VR AFV LL  V  V+SIR++ V ++DH++ARL+ D    PA A  +++L+L SYFP G+
Sbjct:  343 LLHDRSERVRAAFVALLQRVSKVRSIRFFDVVHIDHVMARLAMD-ADVPAVASPMTELLLPSYFPQGV 409          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A5A9PR45_9TELE (G2 Chromosome-associated protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PR45_9TELE)

HSP 1 Score: 63.5 bits (153), Expect = 8.090e-10
Identity = 28/74 (37.84%), Postives = 51/74 (68.92%), Query Frame = 1
Query:   34 VQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255
            +++ +HD+++KVR AFVG+LL +KGV++ ++++V +++H+LARL  D    P  +  +  L+ NS+FP     T
Sbjct:  464 LKSSLHDSSEKVRVAFVGMLLKIKGVRAAKFWKVCSLEHLLARLEIDS---PPVSKRIVNLLFNSFFPVNQPET 534          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A1A8IRR1_NOTKU (Non-SMC condensin II complex, subunit G2 (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8IRR1_NOTKU)

HSP 1 Score: 60.8 bits (146), Expect = 9.340e-10
Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237
            +HDN++KVR+AF+ +L+ VK  ++ +++ V N+DH+LARL+ D    P+ +  + +L+ NS+FP
Sbjct:   10 LHDNSEKVRSAFLDMLIKVKAARAAKFWDVCNMDHLLARLAIDS---PSVSKRIVELLFNSFFP 70          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A2R5GJ73_9STRA (Condensin-2 complex subunit G2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ73_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.100e-9
Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1
Query:   43 LIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALG--LSKLILNSYFPTG 243
            LIHD++K+VR A + LL+ VK +++I++Y+V  VDH+L RL+ D       +LG  L+KL+L+S++P G
Sbjct:  518 LIHDHSKQVRNALLSLLIRVKSIRTIKFYEVVQVDHLLERLAMD------VSLGSKLTKLLLDSFYPQG 580          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: UPI001F044E11 (condensin-2 complex subunit G2-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044E11)

HSP 1 Score: 62.8 bits (151), Expect = 1.510e-9
Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1
Query:   31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLI---LNSYFP 237
            G++NL+HDN+++VR AF+  LL VKG++SI+++ +  +DH+LARL  +      S L L K+I   +NS+ P
Sbjct:  448 GLKNLLHDNSEQVRVAFLDFLLKVKGMRSIKFWSITPMDHLLARLEVEQ-----STLVLQKIIKLLMNSFHP 514          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A1A8G2U0_9TELE (Non-SMC condensin II complex, subunit G2 (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8G2U0_9TELE)

HSP 1 Score: 61.6 bits (148), Expect = 3.780e-9
Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1
Query:   46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237
            +HDN++KVR+AF+ +L+ VK  ++ +++ V N+DH+LARL+ D    P+ +  + +L+ NS+FP
Sbjct:   26 LHDNSEKVRSAFLDMLIKVKAARAAKFWDVCNMDHLLARLATDS---PSVSKRIVELLFNSFFP 86          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A4U5VHP4_COLLU (G2 Chromosome-associated protein n=5 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5VHP4_COLLU)

HSP 1 Score: 61.2 bits (147), Expect = 5.270e-9
Identity = 27/64 (42.19%), Postives = 46/64 (71.88%), Query Frame = 1
Query:   46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237
            +HDN++KVRTAF+ +L+ VK V++ +++ V N+DH+LARL+ D    P+ +  +  L+  S+FP
Sbjct:  465 LHDNSEKVRTAFLDMLIKVKAVRAAKFWDVCNMDHLLARLAVDS---PSVSRRIVDLLFKSFFP 525          
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: F2U6S1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6S1_SALR5)

HSP 1 Score: 61.2 bits (147), Expect = 5.310e-9
Identity = 27/68 (39.71%), Postives = 48/68 (70.59%), Query Frame = 1
Query:   46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLA 249
            +HD +++VR AF+ +L+A++ +K+IR++ V +VDH+LARL    L    +A  + +L+ +S+FP G A
Sbjct:  853 LHDTSRRVRAAFLDMLIAIRPIKNIRFFDVVSVDHLLARLE---LEDATNATKIVQLLASSFFPLGAA 917          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JG90_9PHAE8.450e-3385.33Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF93_ECTSI1.390e-3184.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1CM40_9STRA4.620e-1147.06Hypothetical protein (Fragment) n=1 Tax=Bicosoecid... [more]
A0A5A9PR45_9TELE8.090e-1037.84G2 Chromosome-associated protein n=1 Tax=Triplophy... [more]
A0A1A8IRR1_NOTKU9.340e-1040.63Non-SMC condensin II complex, subunit G2 (Fragment... [more]
A0A2R5GJ73_9STRA1.100e-944.93Condensin-2 complex subunit G2 n=1 Tax=Hondaea fer... [more]
UPI001F044E111.510e-943.06condensin-2 complex subunit G2-like isoform X1 n=2... [more]
A0A1A8G2U0_9TELE3.780e-940.63Non-SMC condensin II complex, subunit G2 (Fragment... [more]
A0A4U5VHP4_COLLU5.270e-942.19G2 Chromosome-associated protein n=5 Tax=Sciaenida... [more]
F2U6S1_SALR55.310e-939.71Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12468contigL-elsbetiae_contig12468:479..1390 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score126.3
Seed ortholog evalue6.8e-27
Seed eggNOG ortholog2880.D8LF93
Preferred nameNCAPG2
KEGG koko:K11492
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000278,GO:0000280,GO:0000793,GO:0000796,GO:0000819,GO:0001701,GO:0001824,GO:0001832,GO:0001833,GO:0001932,GO:0001934,GO:0002262,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0006139,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007275,GO:0008134,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009790,GO:0009792,GO:0009893,GO:0009966,GO:0009967,GO:0009987,GO:0010467,GO:0010469,GO:0010562,GO:0010604,GO:0010646,GO:0010647,GO:0016043,GO:0016070,GO:0016604,GO:0016607,GO:0018130,GO:0019220,GO:0019222,GO:0019438,GO:0022402,GO:0023051,GO:0023056,GO:0030097,GO:0030099,GO:0030154,GO:0030218,GO:0031323,GO:0031325,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032501,GO:0032502,GO:0032774,GO:0032991,GO:0033674,GO:0034101,GO:0034641,GO:0034645,GO:0034654,GO:0035064,GO:0040007,GO:0042325,GO:0042327,GO:0042393,GO:0042592,GO:0043009,GO:0043085,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043425,GO:0043549,GO:0044093,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044815,GO:0045595,GO:0045596,GO:0045637,GO:0045638,GO:0045646,GO:0045647,GO:0045859,GO:0045860,GO:0045937,GO:0046483,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048583,GO:0048584,GO:0048589,GO:0048731,GO:0048856,GO:0048869,GO:0048872,GO:0050730,GO:0050731,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0051093,GO:0051171,GO:0051173,GO:0051174,GO:0051239,GO:0051241,GO:0051246,GO:0051247,GO:0051276,GO:0051338,GO:0051347,GO:0060255,GO:0061097,GO:0061098,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097659,GO:0098772,GO:0098813,GO:0140014,GO:0140030,GO:0140034,GO:1901360,GO:1901362,GO:1901576,GO:1903047,GO:1903706,GO:1903707,GO:2000026,GO:2000273
EggNOG free text desc.inner cell mass cell proliferation
EggNOG OGsKOG1949@1,KOG1949@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Exons2
Model size258
Cds size258
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.5268695-CDS-L-elsbetiae_contig12468:478..6601622815441.5268695-CDS-L-elsbetiae_contig12468:478..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12468 479..660 +
1691682899.721192-CDS-L-elsbetiae_contig12468:478..6601691682899.721192-CDS-L-elsbetiae_contig12468:478..660Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12468 479..660 +
1622815441.5378528-CDS-L-elsbetiae_contig12468:1314..13901622815441.5378528-CDS-L-elsbetiae_contig12468:1314..1390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12468 1315..1390 +
1691682899.734648-CDS-L-elsbetiae_contig12468:1314..13901691682899.734648-CDS-L-elsbetiae_contig12468:1314..1390Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12468 1315..1390 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12468.2010.1prot_L-elsbetiae_contig12468.2010.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12468 479..1390 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12468.2010.1

>prot_L-elsbetiae_contig12468.2010.1 ID=prot_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp
AVLHTLAGAQGVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDH
ILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT*
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mRNA from alignment at L-elsbetiae_contig12468:479..1390+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12468.2010.1 ID=mRNA_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig12468:479..1390+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGCTGCACACCCTCGCCGGAGCACAGGGCGTGCAAAACCTGATCCA CGACAACAACAAGAAGGTGCGGACGGCGTTCGTGGGCCTGCTGCTCGCGG TGAAGGGGGTCAAGTCCATCCGGTACTACCAGGTGGCGAACGTGGACCAC ATCCTGGCGCGTCTCTCCGAGGACCACCTCAGGTGAGTCGGCGACAGCAA CGCAGGCCGCTAGCATCCCACGGCCCAGCGGCAGAGGTAACGGAGGGGAG GGGAACGGTAGCCGCGGCGGTATTTAGCCGCAGCGGTATATAGCGCCGCA GTGGTTTTGAGCCGCAGCGGTATTAAGCCGCAGTGGTGTTTAGCCGCAGC GGTGTTTGGCCGCAGCCGTATTTAGCCGCAGCCGCAGCTCGAGGTGGTAT GTACCGGAGGAGTGTGGTGAGGTTGGGTAGTGCGCGCACTTGGTGGTTTG TGCCCGATGATGTTTCCGAATTGGTTTGTACAGGCCGGGTTCAGCGTTTG TGGTTTTCGACGCCGTCGCTCTCGCGCCCGTGCCACCCTGGGTGCCTCCT TCCCTTGAACCGTCTCTGCCGCCGTGCCTTGGGGAATATTTATTTTCGGT GTCTGTGTCGGTCCCCGTGCAGCGTAAGCGTCTGTGTTGTTGACGGTGCG GTGTCTGAACGCATCTGCCGACCTTGTGTCGTTTTATCGAACCGCCGCCC CCGCTGGTGGCTTTATTTGTTTTGCTCCTCTTGCGCTGCTGCTGCTGCTG ATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGATGCTGAT GCTGATGCTGATGCTGCTGCTGCGTCGGTGTCGCAGGTGTCCCGCTTCCG CTCTGGGGCTCTCGAAGCTCATCCTCAACTCCTACTTCCCGACAGGTTTG GCTCACACCTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12468:479..1390+

>mRNA_L-elsbetiae_contig12468.2010.1 ID=mRNA_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12468:479..1390+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGTGCTGCACACCCTCGCCGGAGCACAGGGCGTGCAAAACCTGATCCA
CGACAACAACAAGAAGGTGCGGACGGCGTTCGTGGGCCTGCTGCTCGCGG
TGAAGGGGGTCAAGTCCATCCGGTACTACCAGGTGGCGAACGTGGACCAC
ATCCTGGCGCGTCTCTCCGAGGACCACCTCAGGCTGTGCTGCACACCCTC
GCCGGAGCACAGGGCGTGCAAAACCTGATCCACGACAACAACAAGAAGGT
GCGGACGGCGTTCGTGGGCCTGCTGCTCGCGGTGAAGGGGGTCAAGTCCA
TCCGGTACTACCAGGTGGCGAACGTGGACCACATCCTGGCGCGTCTCTCC
GAGGACCACCTCAGGTGTCCCGCTTCCGCTCTGGGGCTCTCGAAGCTCAT
CCTCAACTCCTACTTCCCGACAGGTTTGGCTCACACCTAGGTGTCCCGCT
TCCGCTCTGGGGCTCTCGAAGCTCATCCTCAACTCCTACTTCCCGACAGG
TTTGGCTCACACCTAG
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