mRNA_L-elsbetiae_contig12468.2010.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A6H5JG90_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JG90_9PHAE) HSP 1 Score: 129 bits (323), Expect = 8.450e-33 Identity = 64/75 (85.33%), Postives = 66/75 (88.00%), Query Frame = 1 Query: 31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255 GVQNLIHD NKKVRTAFV LLL VKGVKSI+YYQVA VDHILARLSEDH +CPASA GLSKLILNSYFPTG T Sbjct: 408 GVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDHAKCPASASGLSKLILNSYFPTGSGVT 482
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: D8LF93_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF93_ECTSI) HSP 1 Score: 125 bits (314), Expect = 1.390e-31 Identity = 63/75 (84.00%), Postives = 65/75 (86.67%), Query Frame = 1 Query: 31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255 GVQNLIHD NKKVRTAFV LLL VKGVKSI+YYQVA VDHILARLSED +CPASA GLSKLILNSYFPTG T Sbjct: 537 GVQNLIHDTNKKVRTAFVKLLLVVKGVKSIKYYQVATVDHILARLSEDDAKCPASASGLSKLILNSYFPTGSGVT 611
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A7S1CM40_9STRA (Hypothetical protein (Fragment) n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CM40_9STRA) HSP 1 Score: 67.0 bits (162), Expect = 4.620e-11 Identity = 32/68 (47.06%), Postives = 49/68 (72.06%), Query Frame = 1 Query: 43 LIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGL 246 L+HD +++VR AFV LL V V+SIR++ V ++DH++ARL+ D PA A +++L+L SYFP G+ Sbjct: 343 LLHDRSERVRAAFVALLQRVSKVRSIRFFDVVHIDHVMARLAMD-ADVPAVASPMTELLLPSYFPQGV 409
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A5A9PR45_9TELE (G2 Chromosome-associated protein n=1 Tax=Triplophysa tibetana TaxID=1572043 RepID=A0A5A9PR45_9TELE) HSP 1 Score: 63.5 bits (153), Expect = 8.090e-10 Identity = 28/74 (37.84%), Postives = 51/74 (68.92%), Query Frame = 1 Query: 34 VQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLAHT 255 +++ +HD+++KVR AFVG+LL +KGV++ ++++V +++H+LARL D P + + L+ NS+FP T Sbjct: 464 LKSSLHDSSEKVRVAFVGMLLKIKGVRAAKFWKVCSLEHLLARLEIDS---PPVSKRIVNLLFNSFFPVNQPET 534
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A1A8IRR1_NOTKU (Non-SMC condensin II complex, subunit G2 (Fragment) n=1 Tax=Nothobranchius kuhntae TaxID=321403 RepID=A0A1A8IRR1_NOTKU) HSP 1 Score: 60.8 bits (146), Expect = 9.340e-10 Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1 Query: 46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237 +HDN++KVR+AF+ +L+ VK ++ +++ V N+DH+LARL+ D P+ + + +L+ NS+FP Sbjct: 10 LHDNSEKVRSAFLDMLIKVKAARAAKFWDVCNMDHLLARLAIDS---PSVSKRIVELLFNSFFP 70
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A2R5GJ73_9STRA (Condensin-2 complex subunit G2 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5GJ73_9STRA) HSP 1 Score: 63.2 bits (152), Expect = 1.100e-9 Identity = 31/69 (44.93%), Postives = 50/69 (72.46%), Query Frame = 1 Query: 43 LIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALG--LSKLILNSYFPTG 243 LIHD++K+VR A + LL+ VK +++I++Y+V VDH+L RL+ D +LG L+KL+L+S++P G Sbjct: 518 LIHDHSKQVRNALLSLLIRVKSIRTIKFYEVVQVDHLLERLAMD------VSLGSKLTKLLLDSFYPQG 580
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: UPI001F044E11 (condensin-2 complex subunit G2-like isoform X1 n=2 Tax=Xenia sp. Carnegie-2017 TaxID=2897299 RepID=UPI001F044E11) HSP 1 Score: 62.8 bits (151), Expect = 1.510e-9 Identity = 31/72 (43.06%), Postives = 50/72 (69.44%), Query Frame = 1 Query: 31 GVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLI---LNSYFP 237 G++NL+HDN+++VR AF+ LL VKG++SI+++ + +DH+LARL + S L L K+I +NS+ P Sbjct: 448 GLKNLLHDNSEQVRVAFLDFLLKVKGMRSIKFWSITPMDHLLARLEVEQ-----STLVLQKIIKLLMNSFHP 514
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A1A8G2U0_9TELE (Non-SMC condensin II complex, subunit G2 (Fragment) n=2 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8G2U0_9TELE) HSP 1 Score: 61.6 bits (148), Expect = 3.780e-9 Identity = 26/64 (40.62%), Postives = 47/64 (73.44%), Query Frame = 1 Query: 46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237 +HDN++KVR+AF+ +L+ VK ++ +++ V N+DH+LARL+ D P+ + + +L+ NS+FP Sbjct: 26 LHDNSEKVRSAFLDMLIKVKAARAAKFWDVCNMDHLLARLATDS---PSVSKRIVELLFNSFFP 86
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: A0A4U5VHP4_COLLU (G2 Chromosome-associated protein n=5 Tax=Sciaenidae TaxID=30870 RepID=A0A4U5VHP4_COLLU) HSP 1 Score: 61.2 bits (147), Expect = 5.270e-9 Identity = 27/64 (42.19%), Postives = 46/64 (71.88%), Query Frame = 1 Query: 46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFP 237 +HDN++KVRTAF+ +L+ VK V++ +++ V N+DH+LARL+ D P+ + + L+ S+FP Sbjct: 465 LHDNSEKVRTAFLDMLIKVKAVRAAKFWDVCNMDHLLARLAVDS---PSVSRRIVDLLFKSFFP 525
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Match: F2U6S1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U6S1_SALR5) HSP 1 Score: 61.2 bits (147), Expect = 5.310e-9 Identity = 27/68 (39.71%), Postives = 48/68 (70.59%), Query Frame = 1 Query: 46 IHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHILARLSEDHLRCPASALGLSKLILNSYFPTGLA 249 +HD +++VR AF+ +L+A++ +K+IR++ V +VDH+LARL L +A + +L+ +S+FP G A Sbjct: 853 LHDTSRRVRAAFLDMLIAIRPIKNIRFFDVVSVDHLLARLE---LEDATNATKIVQLLASSFFPLGAA 917 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12468.2010.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12468.2010.1 >prot_L-elsbetiae_contig12468.2010.1 ID=prot_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=86bp AVLHTLAGAQGVQNLIHDNNKKVRTAFVGLLLAVKGVKSIRYYQVANVDHback to top mRNA from alignment at L-elsbetiae_contig12468:479..1390+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12468.2010.1 ID=mRNA_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=912bp|location=Sequence derived from alignment at L-elsbetiae_contig12468:479..1390+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12468:479..1390+ >mRNA_L-elsbetiae_contig12468.2010.1 ID=mRNA_L-elsbetiae_contig12468.2010.1|Name=mRNA_L-elsbetiae_contig12468.2010.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=516bp|location=Sequence derived from alignment at L-elsbetiae_contig12468:479..1390+ (Laminarionema elsbetiae ELsaHSoW15)back to top |