mRNA_L-elsbetiae_contig12460.2003.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12460.2003.1
Unique NamemRNA_L-elsbetiae_contig12460.2003.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12460.2003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12460contigL-elsbetiae_contig12460:3574..4157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size584
Cds size453
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.0683641-CDS-L-elsbetiae_contig12460:3573..40261622815441.0683641-CDS-L-elsbetiae_contig12460:3573..4026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12460 3574..4026 +
1691682899.5317574-CDS-L-elsbetiae_contig12460:3573..40261691682899.5317574-CDS-L-elsbetiae_contig12460:3573..4026Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12460 3574..4026 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815441.08204-UTR-L-elsbetiae_contig12460:4026..41571622815441.08204-UTR-L-elsbetiae_contig12460:4026..4157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12460 4027..4157 +
1691682899.5410805-UTR-L-elsbetiae_contig12460:4026..41571691682899.5410805-UTR-L-elsbetiae_contig12460:4026..4157Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12460 4027..4157 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12460.2003.1prot_L-elsbetiae_contig12460.2003.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12460 3574..4026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12460.2003.1

>prot_L-elsbetiae_contig12460.2003.1 ID=prot_L-elsbetiae_contig12460.2003.1|Name=mRNA_L-elsbetiae_contig12460.2003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=151bp
QSHNSKTRPQLLRKSPNSKTKPQLQDKAPTLQKKKTTSRQLQDKAPTLKK
KPRLQDKAPTPRQSHNSKTRPQLLRKSPNSKTKPQLQDKATTLKTKPQPP
PCAPARNNATLNLHAELTQGEPTFTARGAKKVSKRAVCCRERERRRFDVE
*
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mRNA from alignment at L-elsbetiae_contig12460:3574..4157+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12460.2003.1 ID=mRNA_L-elsbetiae_contig12460.2003.1|Name=mRNA_L-elsbetiae_contig12460.2003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=584bp|location=Sequence derived from alignment at L-elsbetiae_contig12460:3574..4157+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAGCCACAACTCCAAGACAAGGCCCCAACTCTTAAGAAAAAGCCCCAA
CTCCAAGACAAAGCCACAACTCCAAGACAAAGCCCCAACTCTCCAGAAAA
AAAAAACGACTTCAAGACAACTCCAAGACAAAGCCCCAACTCTTAAGAAA
AAGCCCCGACTTCAAGACAAAGCCCCAACTCCAAGACAAAGCCACAACTC
CAAGACAAGGCCCCAACTCTTAAGAAAAAGCCCCAACTCCAAGACAAAGC
CACAACTCCAAGACAAAGCCACAACTCTGAAGACAAAGCCACAACCGCCG
CCATGCGCACCAGCCAGGAACAATGCAACGCTAAACCTGCATGCAGAGCT
CACGCAGGGCGAGCCAACTTTCACCGCGCGTGGCGCAAAGAAAGTTTCAA
AGAGAGCCGTATGTTGTAGAGAGAGAGAGAGGAGGCGTTTCGATGTGGAG
TAGACTGGATGCACCTTTCCTCAAAGTAAAAAAAACGAAGACAAACGAAG
ACACCCACCAGCGAAACACCAGATACATCGCTAAACCTTTCAAAACCAAA
CAACCAGGAGACGGCAGACAAACTTCGGGAGCCT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12460:3574..4157+

>mRNA_L-elsbetiae_contig12460.2003.1 ID=mRNA_L-elsbetiae_contig12460.2003.1|Name=mRNA_L-elsbetiae_contig12460.2003.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=906bp|location=Sequence derived from alignment at L-elsbetiae_contig12460:3574..4157+ (Laminarionema elsbetiae ELsaHSoW15)
CAAAGCCACAACTCCAAGACAAGGCCCCAACTCTTAAGAAAAAGCCCCAA
CTCCAAGACAAAGCCACAACTCCAAGACAAAGCCCCAACTCTCCAGAAAA
AAAAAACGACTTCAAGACAACTCCAAGACAAAGCCCCAACTCTTAAGAAA
AAGCCCCGACTTCAAGACAAAGCCCCAACTCCAAGACAAAGCCACAACTC
CAAGACAAGGCCCCAACTCTTAAGAAAAAGCCCCAACTCCAAGACAAAGC
CACAACTCCAAGACAAAGCCACAACTCTGAAGACAAAGCCACAACCGCCG
CCATGCGCACCAGCCAGGAACAATGCAACGCTAAACCTGCATGCAGAGCT
CACGCAGGGCGAGCCAACTTTCACCGCGCGTGGCGCAAAGAAAGTTTCAA
AGAGAGCCGTATGTTGTAGAGAGAGAGAGAGGAGGCGTTTCGATGTGGAG
TAGCAAAGCCACAACTCCAAGACAAGGCCCCAACTCTTAAGAAAAAGCCC
CAACTCCAAGACAAAGCCACAACTCCAAGACAAAGCCCCAACTCTCCAGA
AAAAAAAAACGACTTCAAGACAACTCCAAGACAAAGCCCCAACTCTTAAG
AAAAAGCCCCGACTTCAAGACAAAGCCCCAACTCCAAGACAAAGCCACAA
CTCCAAGACAAGGCCCCAACTCTTAAGAAAAAGCCCCAACTCCAAGACAA
AGCCACAACTCCAAGACAAAGCCACAACTCTGAAGACAAAGCCACAACCG
CCGCCATGCGCACCAGCCAGGAACAATGCAACGCTAAACCTGCATGCAGA
GCTCACGCAGGGCGAGCCAACTTTCACCGCGCGTGGCGCAAAGAAAGTTT
CAAAGAGAGCCGTATGTTGTAGAGAGAGAGAGAGGAGGCGTTTCGATGTG
GAGTAG
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