mRNA_L-elsbetiae_contig12457.2000.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12457.2000.1
Unique NamemRNA_L-elsbetiae_contig12457.2000.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12457.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12457contigL-elsbetiae_contig12457:1249..2182 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size254
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815440.6373596-CDS-L-elsbetiae_contig12457:1250..14331622815440.6373596-CDS-L-elsbetiae_contig12457:1250..1433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12457 1251..1433 -
1691682899.1880896-CDS-L-elsbetiae_contig12457:1250..14331691682899.1880896-CDS-L-elsbetiae_contig12457:1250..1433Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12457 1251..1433 -
1622815440.647696-CDS-L-elsbetiae_contig12457:2113..21821622815440.647696-CDS-L-elsbetiae_contig12457:2113..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12457 2114..2182 -
1691682899.2009032-CDS-L-elsbetiae_contig12457:2113..21821691682899.2009032-CDS-L-elsbetiae_contig12457:2113..2182Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12457 2114..2182 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12457.2000.1prot_L-elsbetiae_contig12457.2000.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12457 1251..2182 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12457.2000.1

>prot_L-elsbetiae_contig12457.2000.1 ID=prot_L-elsbetiae_contig12457.2000.1|Name=mRNA_L-elsbetiae_contig12457.2000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
PAATTCRSRPRPRARCWAGQAHTPVPRQPCPRRHPEPRGRGKTIHGAPGL
GDQEEAWPARGGESGSDSGPRPGAPCQWVRPVEG
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mRNA from alignment at L-elsbetiae_contig12457:1249..2182-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12457.2000.1 ID=mRNA_L-elsbetiae_contig12457.2000.1|Name=mRNA_L-elsbetiae_contig12457.2000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=934bp|location=Sequence derived from alignment at L-elsbetiae_contig12457:1249..2182- (Laminarionema elsbetiae ELsaHSoW15)
CCCGCAGCAACTACGTGTCGTTCCCGTCCCAGACCCAGAGCAAGATGTTG
GGCGGGGCAGGCGCATACAGTGAGGGAGGGGGCCCGGGGGCTTCTGTTGT
GTTTGTGTTTTGGTTGGGTTGGCATTGATTTTTTGTTCCTTGTTTATTTT
TCTCGCGGGGGCTTCTTTGATCGGAGAGCGTTTTTGTGGGTGGTATGGTG
CTGTCTGGACTGAACTTGACCCCCCCCCCCCCCCAAAAGGGAGGTGGCGA
AGTGTTGTTCCATTTACTTGGTAAGAGAGATAATTTAGCAGGGATGCGGT
GGAGGAGAAAGCGAAATGCCCAGGCATTGCTTTCACGTCGGGGAAAATCA
GAAGAGCACATTTGAGCCGTGTAGGGAGGAAAACAAAATCGAGGGGAGAT
AGGGGAGAGAGGCCAACAGGATGAAAGCTGTGAATTATACCCTAGATCAG
GGCAAGAAAACGCTCGCCAAGTTGGTAAAAGAGGTGGCGCGGTGAAACAG
GGCCTCAATGGATGGGGGCCAAGATGCTCGAAAAGGTTTTCGTGTTGCGA
CAAACACACAAGTATTCTGGCTCTGAGTGGGTAGAGGGCCTCGGAACGCT
GCTCCACCCGTAACGTTGTCAAATTATTGCGCCAACAATGAGACTACAAC
AACACGCCTGCTTTTCGTACAGATGGCGATTTGCGCGCAGTGTCGAGCAT
AAGGCAGGCAGCAATTAAGCCCCTCCCTTTCCCCAACGAAACTTCGCAGC
CGGTTCCCAGGCAGCCATGCCCCCGCCGGCACCCCGAGCCCCGGGGGCGC
GGGAAAACGATTCACGGGGCTCCCGGTCTCGGGGATCAGGAGGAGGCGTG
GCCAGCCAGGGGGGGGGAGTCGGGAAGCGATTCCGGACCACGTCCGGGGG
CTCCGTGTCAGTGGGTGCGGCCCGTGGAGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12457:1249..2182-

>mRNA_L-elsbetiae_contig12457.2000.1 ID=mRNA_L-elsbetiae_contig12457.2000.1|Name=mRNA_L-elsbetiae_contig12457.2000.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig12457:1249..2182- (Laminarionema elsbetiae ELsaHSoW15)
CCCGCAGCAACTACGTGTCGTTCCCGTCCCAGACCCAGAGCAAGATGTTG
GGCGGGGCAGGCGCATACACCCGCAGCAACTACGTGTCGTTCCCGTCCCA
GACCCAGAGCAAGATGTTGGGCGGGGCAGGCGCATACACCGGTTCCCAGG
CAGCCATGCCCCCGCCGGCACCCCGAGCCCCGGGGGCGCGGGAAAACGAT
TCACGGGGCTCCCGGTCTCGGGGATCAGGAGGAGGCGTGGCCAGCCAGGG
GGGGGGAGTCGGGAAGCGATTCCGGACCACGTCCGGGGGCTCCGTGTCAG
TGGGTGCGGCCCGTGGAGGGGCCGGTTCCCAGGCAGCCATGCCCCCGCCG
GCACCCCGAGCCCCGGGGGCGCGGGAAAACGATTCACGGGGCTCCCGGTC
TCGGGGATCAGGAGGAGGCGTGGCCAGCCAGGGGGGGGGAGTCGGGAAGC
GATTCCGGACCACGTCCGGGGGCTCCGTGTCAGTGGGTGCGGCCCGTGGA
GGGG
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