mRNA_L-elsbetiae_contig12453.1998.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12453.1998.1
Unique NamemRNA_L-elsbetiae_contig12453.1998.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12453.1998.1 vs. uniprot
Match: D7G330_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G330_ECTSI)

HSP 1 Score: 97.1 bits (240), Expect = 1.340e-20
Identity = 49/63 (77.78%), Postives = 50/63 (79.37%), Query Frame = 2 
Query:  329 GGLCTAVLNAKGMVDKASDNQVKLEKLCEWCCGITV*VT--------LMINVSPLEDCVKELE 493
            GGLCTAVLNAK MVDKASDNQ KLEKLCE CCGITV V         LM+NVSPLEDCVKELE
Sbjct:   34 GGLCTAVLNAKDMVDKASDNQAKLEKLCERCCGITVQVVEKLKGPTPLMVNVSPLEDCVKELE 96
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BLAST of mRNA_L-elsbetiae_contig12453.1998.1 vs. uniprot
Match: A0A6H5K0A6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0A6_9PHAE)

HSP 1 Score: 79.0 bits (193), Expect = 4.500e-14
Identity = 41/57 (71.93%), Postives = 43/57 (75.44%), Query Frame = 2 
Query:  329 GGLCTAVLNAKGMVDKASDNQVKLEKLCEWCCGITV*V--------TLMINVSPLED 475
            GGLCTAVLNA  MVDKAS+NQ KLEKLCE CCGITV V        +L INVSPLED
Sbjct:    5 GGLCTAVLNANVMVDKASNNQAKLEKLCESCCGITVQVVEKLQGSRSLTINVSPLED 61
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12453.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G330_ECTSI1.340e-2077.78Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K0A6_9PHAE4.500e-1471.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12453contigL-elsbetiae_contig12453:2063..2883 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size279
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12453.1998.1prot_L-elsbetiae_contig12453.1998.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12453 2277..2883 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815440.5441067-UTR-L-elsbetiae_contig12453:2062..22761622815440.5441067-UTR-L-elsbetiae_contig12453:2062..2276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12453 2063..2276 -
1691682899.138838-UTR-L-elsbetiae_contig12453:2062..22761691682899.138838-UTR-L-elsbetiae_contig12453:2062..2276Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12453 2063..2276 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815440.5561814-CDS-L-elsbetiae_contig12453:2276..22901622815440.5561814-CDS-L-elsbetiae_contig12453:2276..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12453 2277..2290 -
1691682899.148786-CDS-L-elsbetiae_contig12453:2276..22901691682899.148786-CDS-L-elsbetiae_contig12453:2276..2290Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12453 2277..2290 -
1622815440.5669122-CDS-L-elsbetiae_contig12453:2618..28831622815440.5669122-CDS-L-elsbetiae_contig12453:2618..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12453 2619..2883 -
1691682899.1577952-CDS-L-elsbetiae_contig12453:2618..28831691682899.1577952-CDS-L-elsbetiae_contig12453:2618..2883Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12453 2619..2883 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12453.1998.1

>prot_L-elsbetiae_contig12453.1998.1 ID=prot_L-elsbetiae_contig12453.1998.1|Name=mRNA_L-elsbetiae_contig12453.1998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=93bp
EKVSCPENHLFCADRLPLSQQQGERTKPHRKETAVVEVLLYFGGGRTPSP
VLVRDATYAGAGSQTKLLVCPQRYAHGEGNHNRLRGARGLRP*
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mRNA from alignment at L-elsbetiae_contig12453:2063..2883-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12453.1998.1 ID=mRNA_L-elsbetiae_contig12453.1998.1|Name=mRNA_L-elsbetiae_contig12453.1998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=821bp|location=Sequence derived from alignment at L-elsbetiae_contig12453:2063..2883- (Laminarionema elsbetiae ELsaHSoW15)
GAAAAAGTATCGTGTCCTGAAAACCACTTATTTTGTGCTGATCGTCTGCC
TCTCTCACAACAGCAGGGAGAGAGAACCAAACCTCATCGCAAAGAAACCG
CTGTGGTAGAGGTGCTTTTGTATTTTGGCGGGGGACGGACACCATCTCCT
GTACTTGTCCGCGACGCTACGTACGCCGGGGCGGGGAGCCAAACAAAACT
TCTCGTTTGTCCGCAACGCTACGCCCACGGGGAGGGTAACCACAACAGAC
TTCGGGGCGCGCGCGGTTAGTTATGTGTCTCAATAGACTAGGTCTTAGGG
TGCCGGGACCACGCTTTCTCACTCATGAGCCATCTCGCCGCCAGTATGGG
GAGCTTGAGACGCCCTCCAAAAGCCTTGTTTACAAACCATCTGCATTCCC
GATCCCATCCCGAAACATGTCAGACCATAGCGGAATCATTTTCCCTTTGT
GTGTTTGCAAAAACGGGCTTTCACCACACCCACGTGTTGCAGCGCTGCTG
TGTGCACTTCTCTCCGGCAGCAGAACCCTATGCCGAACTACAACAATGCC
TCCCTTCCTGCGCATACTACAACAACGGGTACGTTTCGACCAGGGCTACG
ACCGTGATTGAGGTCACGACAAGCATCCTCAATATCGGCGAGGACATGCC
ATTCGTGGGGGTCTCTGCACAGCGGTGCTGAATGCCAAGGGTATGGTGGA
CAAGGCCAGTGACAACCAAGTCAAGCTGGAGAAGCTTTGCGAGTGGTGCT
GTGGGATCACGGTGTAGGTGACCCTGATGATCAACGTTTCTCCCCTCGAA
GATTGTGTCAAGGAACTCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12453:2063..2883-

>mRNA_L-elsbetiae_contig12453.1998.1 ID=mRNA_L-elsbetiae_contig12453.1998.1|Name=mRNA_L-elsbetiae_contig12453.1998.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=558bp|location=Sequence derived from alignment at L-elsbetiae_contig12453:2063..2883- (Laminarionema elsbetiae ELsaHSoW15)
GAAAAAGTATCGTGTCCTGAAAACCACTTATTTTGTGCTGATCGTCTGCC
TCTCTCACAACAGCAGGGAGAGAGAACCAAACCTCATCGCAAAGAAACCG
CTGTGGTAGAGGTGCTTTTGTATTTTGGCGGGGGACGGACACCATCTCCT
GTACTTGTCCGCGACGCTACGTACGCCGGGGCGGGGAGCCAAACAAAACT
TCTCGTTTGTCCGCAACGCTACGCCCACGGGGAGGGTAACCACAACAGAC
TTCGGGGCGCGCGCGGAAAAAGTATCGTGTCCTGAAAACCACTTATTTTG
TGCTGATCGTCTGCCTCTCTCACAACAGCAGGGAGAGAGAACCAAACCTC
ATCGCAAAGAAACCGCTGTGGTAGAGGTGCTTTTGTATTTTGGCGGGGGA
CGGACACCATCTCCTGTACTTGTCCGCGACGCTACGTACGCCGGGGCGGG
GAGCCAAACAAAACTTCTCGTTTGTCCGCAACGCTACGCCCACGGGGAGG
GTAACCACAACAGACTTCGGGGCGCGCGCGGGCTACGACCGTGAGGCTAC
GACCGTGA
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