mRNA_L-elsbetiae_contig12448.1993.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12448.1993.1
Unique NamemRNA_L-elsbetiae_contig12448.1993.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12448.1993.1 vs. uniprot
Match: D7FLS2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FLS2_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 9.910e-14
Identity = 72/82 (87.80%), Postives = 77/82 (93.90%), Query Frame = 1 
Query:   55 ELYLRGPFDQAVEGARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDGDKGYERARFNQPLAGMAWPPALQQLSAGQAY 300
            ELYLRGPFDQA+E   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGD DKGYERA+FNQPLAGMAWP +L+QLSAGQA+
Sbjct:  500 ELYLRGPFDQAIEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKDKGYERAKFNQPLAGMAWPASLKQLSAGQAF 581
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12448.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FLS2_ECTSI9.910e-1487.80Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12448contigL-elsbetiae_contig12448:642..2966 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size390
Cds size390
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12448.1993.1prot_L-elsbetiae_contig12448.1993.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12448 642..2966 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815439.8773882-CDS-L-elsbetiae_contig12448:641..8181622815439.8773882-CDS-L-elsbetiae_contig12448:641..818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 642..818 -
1691682898.8091304-CDS-L-elsbetiae_contig12448:641..8181691682898.8091304-CDS-L-elsbetiae_contig12448:641..818Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 642..818 -
1622815439.8873658-CDS-L-elsbetiae_contig12448:2144..22731622815439.8873658-CDS-L-elsbetiae_contig12448:2144..2273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 2145..2273 -
1691682898.8418746-CDS-L-elsbetiae_contig12448:2144..22731691682898.8418746-CDS-L-elsbetiae_contig12448:2144..2273Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 2145..2273 -
1622815439.8968625-CDS-L-elsbetiae_contig12448:2882..29661622815439.8968625-CDS-L-elsbetiae_contig12448:2882..2966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 2883..2966 -
1691682898.8581388-CDS-L-elsbetiae_contig12448:2882..29661691682898.8581388-CDS-L-elsbetiae_contig12448:2882..2966Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12448 2883..2966 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12448.1993.1

>prot_L-elsbetiae_contig12448.1993.1 ID=prot_L-elsbetiae_contig12448.1993.1|Name=mRNA_L-elsbetiae_contig12448.1993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=130bp
LQGFNRPITNVDWPEGLTELYLRGPFDQAVEGARFPESLTTLSFGASFNQ
PVEEAEFPEGLEGLYFGDGDKGYERARFNQPLAGMAWPPALQQLSAGQAY
DLPLEGADWPDKLEVIHLPGSQMRVKGCG*
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mRNA from alignment at L-elsbetiae_contig12448:642..2966-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12448.1993.1 ID=mRNA_L-elsbetiae_contig12448.1993.1|Name=mRNA_L-elsbetiae_contig12448.1993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2325bp|location=Sequence derived from alignment at L-elsbetiae_contig12448:642..2966- (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGGGGTTCAACCGGCCTATCACCAACGTGGACTGGCCGGAAGGGCT
GACGGAGCTGTATCTGCGGGGCCCCTTCGACCAGGTGATTCCGTTGATTC
TACTCGTTTGTGCCTCTCTCTTCGTCGTTCTCGGCCCCTCTCTCATTCTC
TCCTTCGGACGTGTTTGTTCTCCTGTGTGACGGAACGTTGCGATGGTTCA
CTTGGTGGCAATCGAGGAGTGACAAAAATAGATGACCTGTGAATACAATA
GGACGGCATTTTTTGACGAGAATATACATTTTTCTTCCTTGGCGTCGAGT
GTGCCTTGTTTTGTGACTACGGGCCCCCAACGATGCTTTGGACTAGAGAG
CTAATGTGAGAAACAACAACAATACATTGTTGGGTGGATCAAGATGACTG
CAGTACTCAAATGCAGTGACGACACAGGGGACAGCAGTTCCCCGTGTCGG
TGTACCTGCATTGTGCTGTGTGGATGATCATTACTATCTTTTCTGCCTGT
GTACCGCGGTGTGTGCCTACAACAGTTGCAGTAAATAGCTGAAACCCCTG
CTCTTCTTGCTGCTGCTGCTGCTGTTGCTTTTGGTGGTGGTGGCTGTGGT
GGTTCTGCTGGCGGGGTATCGGTATTGCGATGGATACGTTCTTGTCGTGG
TGGTGTGCCGTGGTGTGGTGTGGTGGTGGTGGTATCGGCGAAGGCGGTCG
AAGGAGCTCGGTTTCCCGAATCTCTGACGACGCTGTCCTTTGGGGCGTCT
TTCAACCAGCCGGTCGAGGAAGCTGAGTTCCCGGAGGGGCTCGAAGGACT
GTACTTCGGAGACGGCGACAAGGTATGTATAGGCTAACAATATACTTGTG
TGTCATGTTATCGTGAGTACTTGTAGGATGATAATACAAAAATGTAATTT
GACCGGTTTTTAATTGAACTACTGATTTTGTGCGAACATATCTTGGATGG
GGAAACAGGGGGTTAGTACGCCTACAACAGCCCCTCTGGAACGACTTCTT
CACAGACTGGACGTAGACTGCTGACATTTGTTTTCATTCATCAAAAATGT
GACGAGATGAGTGCGACATCTATATGTATATCACCCAACAAGATGAGTAA
ACCCTCTAATATCTATGTAAAACACGGCATTTCTTCGGAGACGGTGGCAT
GGTATGTTTTGTATATGGACTTGTGTCATGTTATCAGGGAGTACTTGCAG
GATAGGAGTGCAATAATGCAACGAGATTAGTGCGACATCTATATGTACAT
CACCCAAGAAGATGAGTAAGCACTCTAATACGAAGTATGTATGTAAACAC
GGCATTTCTTCGGAGACGGCGACAAGGGGCCAGGGCTTGTGTTCGGCTGG
CTTTAACGAGTTGTGGGAAGCTAGATAAGTATGTATGAGGCCAACAAGGC
AGCTATTTGTATATATGTATGTTGTCTTCACATTAAAACCCGTTCCGATC
TCTCCATCCAGTACCTCTCAATGTCCGTACTACTCCAACACTTGATGCGG
TCAATTCCCGTGGTCACGGGCAAACTTATACCCAAGAAAAGGTATTTGTA
CAAGAGAATAAACAGTGAAGAGAGTCCAATACCGGTGTTGGGTTTTTGGG
GTTGGCGACATGCAGGACAGCTCAGAATTCCTCCTGTGCGTTTGTGTATG
GCTGCTGGATTTTGTTGGAAGTGGAGGAGGGTGACGCGTATGGTACCACC
GATTGGCGATGCGATGTGATGCCTTCGGTGTGTGATGGGATACGGTTTCA
TGCCGTGAGGCGCTGCGTCGAAAGAGAAAGAAAGCCTCGTCGCTGTACCA
ACCAACATTAGCGTCACGCCCAAAAGACGCGAGCTGAAAGAGAAAGAGGC
AATCTATCTGCGCGTGCACCTTTCTTACAGCAGCCGTACACACGAGGTAA
GCTCGATAAGTATAAGACGCGTCCTGCTTCGCCCTATGCACCATCAGCAT
CAGCATCAACATCAACATCAACATTGTAGCAAGCATCCGATGCGACCGTT
TCAAGGCACTCTGGAAAGCGCTGTTGCTTCTTTTATTTTTTGAGCGGCTT
CAGGCTGAAGTATCTTCATTGGGCTAAGCTGCTGTTTTAGCGCGGTCGGG
GCTAATTTAAGACACACCCGCCACACACACACACCCACACACACGCAGGG
GTACGAGCGCGCGCGGTTCAACCAACCTCTGGCGGGAATGGCTTGGCCTC
CCGCTCTCCAGCAGCTGTCAGCGGGTCAGGCGTACGACTTGCCGCTGGAG
GGGGCCGACTGGCCGGACAAGCTCGAGGTGATACACCTACCTGGTTCCCA
GATGAGGGTCAAAGGCTGTGGATAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12448:642..2966-

>mRNA_L-elsbetiae_contig12448.1993.1 ID=mRNA_L-elsbetiae_contig12448.1993.1|Name=mRNA_L-elsbetiae_contig12448.1993.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=780bp|location=Sequence derived from alignment at L-elsbetiae_contig12448:642..2966- (Laminarionema elsbetiae ELsaHSoW15)
CTCCAGGGGTTCAACCGGCCTATCACCAACGTGGACTGGCCGGAAGGGCT
GACGGAGCTGTATCTGCGGGGCCCCTTCGACCAGCTCCAGGGGTTCAACC
GGCCTATCACCAACGTGGACTGGCCGGAAGGGCTGACGGAGCTGTATCTG
CGGGGCCCCTTCGACCAGGCGGTCGAAGGAGCTCGGTTTCCCGAATCTCT
GACGACGCTGTCCTTTGGGGCGTCTTTCAACCAGCCGGTCGAGGAAGCTG
AGTTCCCGGAGGGGCTCGAAGGACTGTACTTCGGAGACGGCGACAAGGCG
GTCGAAGGAGCTCGGTTTCCCGAATCTCTGACGACGCTGTCCTTTGGGGC
GTCTTTCAACCAGCCGGTCGAGGAAGCTGAGTTCCCGGAGGGGCTCGAAG
GACTGTACTTCGGAGACGGCGACAAGGGGTACGAGCGCGCGCGGTTCAAC
CAACCTCTGGCGGGAATGGCTTGGCCTCCCGCTCTCCAGCAGCTGTCAGC
GGGTCAGGCGTACGACTTGCCGCTGGAGGGGGCCGACTGGCCGGACAAGC
TCGAGGTGATACACCTACCTGGTTCCCAGATGAGGGTCAAAGGCTGTGGA
TAGGGGTACGAGCGCGCGCGGTTCAACCAACCTCTGGCGGGAATGGCTTG
GCCTCCCGCTCTCCAGCAGCTGTCAGCGGGTCAGGCGTACGACTTGCCGC
TGGAGGGGGCCGACTGGCCGGACAAGCTCGAGGTGATACACCTACCTGGT
TCCCAGATGAGGGTCAAAGGCTGTGGATAG
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