mRNA_L-elsbetiae_contig12446.1992.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12446.1992.1
Unique NamemRNA_L-elsbetiae_contig12446.1992.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12446.1992.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12446contigL-elsbetiae_contig12446:4326..4666 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size280
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12446.1992.1prot_L-elsbetiae_contig12446.1992.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12446 4343..4666 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815439.8229961-UTR-L-elsbetiae_contig12446:4325..43421622815439.8229961-UTR-L-elsbetiae_contig12446:4325..4342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12446 4326..4342 +
1691682898.7771564-UTR-L-elsbetiae_contig12446:4325..43421691682898.7771564-UTR-L-elsbetiae_contig12446:4325..4342Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12446 4326..4342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815439.835799-CDS-L-elsbetiae_contig12446:4342..44761622815439.835799-CDS-L-elsbetiae_contig12446:4342..4476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12446 4343..4476 +
1691682898.788422-CDS-L-elsbetiae_contig12446:4342..44761691682898.788422-CDS-L-elsbetiae_contig12446:4342..4476Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12446 4343..4476 +
1622815439.8498094-CDS-L-elsbetiae_contig12446:4539..46661622815439.8498094-CDS-L-elsbetiae_contig12446:4539..4666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12446 4540..4666 +
1691682898.8007414-CDS-L-elsbetiae_contig12446:4539..46661691682898.8007414-CDS-L-elsbetiae_contig12446:4539..4666Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12446 4540..4666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12446.1992.1

>prot_L-elsbetiae_contig12446.1992.1 ID=prot_L-elsbetiae_contig12446.1992.1|Name=mRNA_L-elsbetiae_contig12446.1992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=87bp
MMVASADTTRTQKRRATSVVNVVGPPYCSCCLGATHPVVVSVHYFGVRAI
HAALVNHEYLTIIFPSPWMSAQHTPVVRCGSVIFLSD
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mRNA from alignment at L-elsbetiae_contig12446:4326..4666+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12446.1992.1 ID=mRNA_L-elsbetiae_contig12446.1992.1|Name=mRNA_L-elsbetiae_contig12446.1992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=341bp|location=Sequence derived from alignment at L-elsbetiae_contig12446:4326..4666+ (Laminarionema elsbetiae ELsaHSoW15)
ACGATCAGTGTAAACTGATGATGGTGGCATCTGCCGATACGACGCGCACC
CAGAAACGCCGGGCGACTTCAGTGGTGAACGTAGTAGGCCCCCCCTACTG
TAGCTGTTGCCTTGGTGCGACGCACCCCGTTGTCGTGAGCGTTCACTATT
TGTGATACATCATTTATTCAATTTGCAATCGTTCAGAGCACACCCATTGG
GCCTTCGGCGGCAGTGGTGTGCGTGCAATACACGCCGCCCTCGTGAATCA
TGAATATCTCACGATTATTTTCCCATCTCCATGGATGAGCGCACAACACA
CACCAGTCGTGCGTTGCGGTTCAGTGATATTCCTGAGCGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12446:4326..4666+

>mRNA_L-elsbetiae_contig12446.1992.1 ID=mRNA_L-elsbetiae_contig12446.1992.1|Name=mRNA_L-elsbetiae_contig12446.1992.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=522bp|location=Sequence derived from alignment at L-elsbetiae_contig12446:4326..4666+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGGTGGCATCTGCCGATACGACGCGCACCCAGAAACGCCGGGCGAC
TTCAGTGGTGAACGTAGTAGGCCCCCCCTACTGTAGCTGTTGCCTTGGTG
CGACGCACCCCGTTGTCGTGAGCGTTCACTATTTATGATGGTGGCATCTG
CCGATACGACGCGCACCCAGAAACGCCGGGCGACTTCAGTGGTGAACGTA
GTAGGCCCCCCCTACTGTAGCTGTTGCCTTGGTGCGACGCACCCCGTTGT
CGTGAGCGTTCACTATTTTGGTGTGCGTGCAATACACGCCGCCCTCGTGA
ATCATGAATATCTCACGATTATTTTCCCATCTCCATGGATGAGCGCACAA
CACACACCAGTCGTGCGTTGCGGTTCAGTGATATTCCTGAGCGACTGGTG
TGCGTGCAATACACGCCGCCCTCGTGAATCATGAATATCTCACGATTATT
TTCCCATCTCCATGGATGAGCGCACAACACACACCAGTCGTGCGTTGCGG
TTCAGTGATATTCCTGAGCGAC
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