|
Homology
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: D8LCV3_ECTSI (Proteasome subunit beta n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCV3_ECTSI) HSP 1 Score: 394 bits (1012), Expect = 9.440e-132 Identity = 208/263 (79.09%), Postives = 220/263 (83.65%), Query Frame = 1
Query: 133 MKGA-GAARFGGETGGGGGDPYSLAAPGAEPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDFRPPEN 918
MKGA G+AR G GGG DPY++AAPGAEPLKLSHGTTTVALVC+GGVIAAVDSRASMGSFVGSRTTQKVIPVS+HILGTMAGGAADCTFWLRYLGMQAK+F DRNGF MPVATAARVLADALLGQRG+GLSVGTMIMGHDR GQLFYVDSDGARVKG YFSVGSGSTYAYSVLDEGYR+GM L+EAADLA+RAVRHATYRDAFSGGFINVF VDASGWTRL V+DSGFLD P +
Sbjct: 1 MKGAAGSARMAGRAGGG--DPYTVAAPGAEPLKLSHGTTTVALVCDGGVIAAVDSRASMGSFVGSRTTQKVIPVSQHILGTMAGGAADCTFWLRYLGMQAKVFEDRNGFQMPVATAARVLADALLGQRGKGLSVGTMIMGHDR--------GNRDSSGRGSVSGGNQGGGQLFYVDSDGARVKGRYFSVGSGSTYAYSVLDEGYRDGMSLEEAADLAKRAVRHATYRDAFSGGFINVFVVDASGWTRLDVDDSGFLDLTQPSD 253
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: A0A836CP51_9STRA (Proteasome endopeptidase complex n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CP51_9STRA) HSP 1 Score: 236 bits (601), Expect = 1.910e-70 Identity = 129/230 (56.09%), Postives = 159/230 (69.13%), Query Frame = 1
Query: 193 YSLAAPGAEPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHD--RRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLA 876
+ L PGA PL L+HGTTTVA+V +GG+IAAVDSRASMG+F+GS TT K IP+S+ I+GTMAGGAADC+FWLR LG Q ++ NG + V AARVLA+ L G G GLS+GTMIMG D GGS L+YVDS+G RV+G YF+VGSGSTYAY VLD GY+ M + AA LA RAV+ A +RDA+SGGFINV+ V+A+G T+L+
Sbjct: 28 HQLDVPGASPLLLAHGTTTVAMVIDGGIIAAVDSRASMGAFIGSSTTTKFIPISKTIVGTMAGGAADCSFWLRVLGEQVRVLTG-NGARVTVRAAARVLANVLHGLSGGGLSIGTMIMGWDGGAEGGSP----------------------DLYYVDSEGTRVRGSYFAVGSGSTYAYGVLDAGYQRNMTVGAAAALAARAVQRAAFRDAYSGGFINVYHVNATGVTQLS 234
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: M2W568_GALSU (Proteasome subunit beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2W568_GALSU) HSP 1 Score: 221 bits (564), Expect = 1.520e-64 Identity = 109/229 (47.60%), Postives = 156/229 (68.12%), Query Frame = 1
Query: 208 PGAEPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGF 894
P + +K HGTTT++ + G++AAVDSRASMG ++GS + +KVI +++++LGTMAGGAADCTFW RYLGM+ +IF +N + VA A+++L + + +G GLS+GTMIMG D++G ++YVDS+G R+KG FSVGSGST+A VLD+GY+ M ++EA +L RR++ HAT+RDAFSGG+INV+ + GW ++ EDSGF
Sbjct: 48 PPKDLVKFHHGTTTLSFIFSEGIVAAVDSRASMGQYIGSGSVKKVIEINKYLLGTMAGGAADCTFWERYLGMRCRIFELKNKERISVAAASKILCNTVYQYKGMGLSMGTMIMGWDKKGP------------------------HIYYVDSEGTRLKGSKFSVGSGSTHALGVLDQGYKWNMSVEEACELGRRSIYHATHRDAFSGGYINVYYIGPDGWKFISHEDSGF 252
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: A0A5J4YV88_PORPP (Proteasome subunit beta n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YV88_PORPP) HSP 1 Score: 219 bits (558), Expect = 1.630e-63 Identity = 110/227 (48.46%), Postives = 152/227 (66.96%), Query Frame = 1
Query: 223 LKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDF 903
LK HGTTT+A V +GGV+ AVDSRASMG ++GS + +K+I ++ ++LGTMAGGAADC+FW R LG + +++ RN + VA A+++LA+ + G +G GLS+GTMI G D+ G + LFYVD+DG R+KG FSVGSGSTYAY VLD+GY + +++A +L RR++ HAT+RDA SGGFINV+ V GW ++ EDSG +
Sbjct: 67 LKFLHGTTTLAFVFQGGVVVAVDSRASMGQYIGSGSVRKIIEINPYLLGTMAGGAADCSFWERDLGRRCRLYELRNKERISVAAASKLLANTVYGYKGMGLSMGTMITGWDKTGPN------------------------LFYVDNDGTRLKGHKFSVGSGSTYAYGVLDQGYHWDLTVEDALELGRRSIFHATHRDAASGGFINVYHVKEDGWVNISHEDSGMTKY 269
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: M1UUH3_CYAM1 (Proteasome subunit beta n=2 Tax=cellular organisms TaxID=131567 RepID=M1UUH3_CYAM1) HSP 1 Score: 219 bits (557), Expect = 3.390e-63 Identity = 112/227 (49.34%), Postives = 151/227 (66.52%), Query Frame = 1
Query: 223 LKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDF 903
+K HGTTT+A V G+I AVDSRASMG ++GS T +K+I ++ ++LGTMAGGAADC+FW RYLGM+ ++ ++ + VA A+++LA+ + +G GLS+GTMI G D+ G QLFYVDSDG R++G FSVGSGST+AY VLD+ YR M EAA+L RRA+ HAT+RDA+SGG+INV+ V A GW L+ +DSG +
Sbjct: 65 VKFLHGTTTLAFVFRDGIIVAVDSRASMGQYIGSGTVKKIIEINPYLLGTMAGGAADCSFWERYLGMRCRLHELQHRERISVAAASKLLANIVYEYKGMGLSMGTMIAGWDKTGP------------------------QLFYVDSDGVRLRGTRFSVGSGSTFAYGVLDQFYRWDMDAAEAAELGRRAIFHATHRDAYSGGYINVYHVKADGWVNLSHDDSGITKY 267
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: A0A0H5RKB4_9EUKA (Proteasome subunit beta n=1 Tax=Spongospora subterranea TaxID=70186 RepID=A0A0H5RKB4_9EUKA) HSP 1 Score: 218 bits (554), Expect = 7.570e-63 Identity = 110/232 (47.41%), Postives = 153/232 (65.95%), Query Frame = 1
Query: 208 PGAEPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDF 903
P A +K +HGTTT+ V +GGV+ AVDSRASMGS++GS T +KVI ++E +LGTMAGGAADC++W R+L + ++++ RNG + VA A+++L + RGRGLS GTMI G D+RG QL+Y+D G R+KG FSVGSGSTYAY VLD Y+ M +EA +L +RA+ HAT+RDA+SGG INV+ ++ +GWT++ +D L +
Sbjct: 73 PIAPDMKYAHGTTTLGFVFKGGVLIAVDSRASMGSYIGSGTVKKVIEINERLLGTMAGGAADCSYWERHLATECRLYQLRNGENISVAAASKILCNIFFQYRGRGLSCGTMIGGWDQRGP------------------------QLYYIDDKGTRMKGPRFSVGSGSTYAYGVLDTHYKPDMTKEEAVELGKRAIYHATHRDAYSGGTINVYLIEEAGWTKMFSDDMNTLHY 280
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: C1EIU4_MICCC (Proteasome subunit beta n=4 Tax=Micromonas TaxID=38832 RepID=C1EIU4_MICCC) HSP 1 Score: 217 bits (552), Expect = 1.440e-62 Identity = 114/239 (47.70%), Postives = 156/239 (65.27%), Query Frame = 1
Query: 223 LKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDFR-----PPENLE 924
+K +HGTTT+ + E GV+ AVDSRAS G ++ S+T +KVI ++ ++LGTMAGGAADC FW R LG+Q ++ NG + VA A+++LA+ L G RG+GLS+GTM+ G D +G L+YVDSDG R+KG FSVGSGS +AY VLD+GYR + ++EA +L RRA+ HAT+RDAFSGG I+V+ V+ +GWT+++ D G L F P EN E
Sbjct: 57 VKPNHGTTTLGFIFEHGVVIAVDSRASQGPYISSQTVKKVIEINPYLLGTMAGGAADCQFWQRNLGIQCRLHELENGKRISVAGASKLLANTLYGYRGQGLSMGTMVAGWDLKGPG------------------------LYYVDSDGTRLKGQRFSVGSGSLFAYGVLDQGYRWDLSVEEACELGRRAIYHATFRDAFSGGTISVYHVNENGWTKVSGTDVGELHFEYYPADPVENPE 271
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: L8GCZ8_ACACA (Proteasome subunit beta n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GCZ8_ACACA) HSP 1 Score: 216 bits (550), Expect = 1.740e-62 Identity = 107/230 (46.52%), Postives = 154/230 (66.96%), Query Frame = 1
Query: 214 AEPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDF 903
AEP+K+ HGTTT++ V +GG++ AVDSRA+ G+++ S++ QKVI ++ +LGTMAGGAADC++W R LG + ++++ RN M VA A++VL++ L R +GLSVG+MI G D+RG + +FYVDSDG R+KG FSVGSG TYAY V+D GYR + ++EA +L RRA+ HA +RDA+SGG INV+ + GW ++ +DS L +
Sbjct: 53 AEPIKMLHGTTTLSFVFQGGIVVAVDSRATQGTYIASQSVQKVIRINPFLLGTMAGGAADCSYWERELGRRTRLYQLRNKERMTVAAASKVLSNILYYYRNQGLSVGSMICGWDKRGPN------------------------IFYVDSDGTRLKGDKFSVGSGGTYAYGVMDAGYRFDLTVEEACELGRRAIFHAAHRDAYSGGTINVYHISEQGWKHISAQDSNDLYY 258
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: F4PRF6_CAVFA (Proteasome subunit beta n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PRF6_CAVFA) HSP 1 Score: 215 bits (547), Expect = 1.030e-61 Identity = 109/223 (48.88%), Postives = 151/223 (67.71%), Query Frame = 1
Query: 217 EPLKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVED 885
+P++++HGTTT+A V GGVI AVDS+++ GS+V SRT +KVI ++ ++LGTMAGGAADC+FW R LG + +++ RN + VA A+++LA+ + +G GLS+GTMI G D+ G L+YVD+DG R+KG FSVGSGSTYAY VLD GY+ + QEA +L RRAV HAT+RDA SGGFINV+ V +GW +++ +D
Sbjct: 81 KPIEMAHGTTTLAFVFNGGVIVAVDSKSTQGSYVASRTVKKVIEITPNLLGTMAGGAADCSFWERELGRRCRLYELRNKELISVAAASKILANIVYSYKGYGLSMGTMITGWDKTGPC------------------------LYYVDNDGTRLKGQRFSVGSGSTYAYGVLDSGYKPDLTDQEAQELGRRAVYHATHRDAMSGGFINVYHVKETGWVKISSDD 279
BLAST of mRNA_L-elsbetiae_contig1244.1990.1 vs. uniprot
Match: A0A7J7IMB5_9RHOD (Proteasome subunit beta n=1 Tax=Cyanidiococcus yangmingshanensis TaxID=2690220 RepID=A0A7J7IMB5_9RHOD) HSP 1 Score: 215 bits (547), Expect = 1.030e-61 Identity = 110/227 (48.46%), Postives = 150/227 (66.08%), Query Frame = 1
Query: 223 LKLSHGTTTVALVCEGGVIAAVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAKIFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSXXXXXXXXXXXXXXXXXXXXXEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLDEGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVEDSGFLDF 903
+K HGTTT+A V G+I AVDSRASMG ++GS T +K+I ++ ++LGTMAGGAADC+FW RYLGM+ ++ ++ + VA A+++L++ + +G GLS+GTMI G D+ G QLFYVDSDG R++G FSVGSGST+AY +LD YR M EAA+L RRA+ HAT+RDA+SGG+INV+ V A GW L+ +DSG +
Sbjct: 67 VKFLHGTTTLAFVFREGIIVAVDSRASMGQYIGSGTVKKIIEINPYLLGTMAGGAADCSFWERYLGMRCRLHELQHRERISVAAASKLLSNIVYEYKGMGLSMGTMIAGWDKTGP------------------------QLFYVDSDGIRLRGTRFSVGSGSTFAYGILDHFYRWDMNATEAAELGRRAIFHATHRDAYSGGYINVYHVKADGWVNLSHDDSGISKY 269
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 396.0 |
Seed ortholog evalue | 1.4e-107 |
Seed eggNOG ortholog | 2880.D8LCV3 |
Preferred name | PSMB11 |
KEGG ko | ko:K02737,ko:K02740,ko:K05654,ko:K11598 |
KEGG TC | 3.A.1.209 |
KEGG Pathway | ko02010,ko03050,ko04145,ko04612,ko05168,ko05340,map02010,map03050,map04145,map04612,map05168,map05340 |
KEGG Module | M00337,M00340 |
Hectar predicted targeting category | other localisation |
GOs | GO:0000502,GO:0001775,GO:0002376,GO:0002520,GO:0002521,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0005839,GO:0006464,GO:0006508,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0007154,GO:0007165,GO:0007166,GO:0007275,GO:0008150,GO:0008152,GO:0008233,GO:0009987,GO:0010033,GO:0016579,GO:0016787,GO:0019221,GO:0019222,GO:0019538,GO:0019774,GO:0019882,GO:0023052,GO:0030097,GO:0030098,GO:0030154,GO:0030162,GO:0030217,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0034097,GO:0034340,GO:0036037,GO:0036211,GO:0042110,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043374,GO:0043412,GO:0043687,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045087,GO:0045321,GO:0045444,GO:0046631,GO:0046632,GO:0046649,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051171,GO:0051246,GO:0051336,GO:0051716,GO:0052547,GO:0052548,GO:0060255,GO:0060337,GO:0065007,GO:0065009,GO:0070013,GO:0070646,GO:0070647,GO:0070887,GO:0071310,GO:0071345,GO:0071357,GO:0071704,GO:0080090,GO:0140096,GO:1901564,GO:1902494,GO:1905368,GO:1905369,GO:1990111 |
EggNOG free text desc. | threonine-type endopeptidase activity |
EggNOG OGs | COG0638@1,KOG0175@2759 |
EC | 3.4.25.1 |
COG Functional cat. | O |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko00001,ko00002,ko01000,ko01002,ko02000,ko03051 |
Ec32 ortholog description | 20S proteasome beta 5 subunit |
Ec32 ortholog | Ec-07_007040.1 |
Exons | 6 |
Model size | 1724 |
Cds size | 795 |
Stop | 1 |
Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815439.6661906-UTR-L-elsbetiae_contig1244:13325..13457 | 1622815439.6661906-UTR-L-elsbetiae_contig1244:13325..13457 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1244 13326..13457 + |
1691682898.6706324-UTR-L-elsbetiae_contig1244:13325..13457 | 1691682898.6706324-UTR-L-elsbetiae_contig1244:13325..13457 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1244 13326..13457 + |
1622815439.7366362-UTR-L-elsbetiae_contig1244:19789..20586 | 1622815439.7366362-UTR-L-elsbetiae_contig1244:19789..20586 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1244 19790..20586 + |
1691682898.7484338-UTR-L-elsbetiae_contig1244:19789..20586 | 1691682898.7484338-UTR-L-elsbetiae_contig1244:19789..20586 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig1244 19790..20586 + |
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815439.6784468-CDS-L-elsbetiae_contig1244:13457..13497 | 1622815439.6784468-CDS-L-elsbetiae_contig1244:13457..13497 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 13458..13497 + |
1691682898.6827548-CDS-L-elsbetiae_contig1244:13457..13497 | 1691682898.6827548-CDS-L-elsbetiae_contig1244:13457..13497 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 13458..13497 + |
1622815439.688915-CDS-L-elsbetiae_contig1244:14663..14830 | 1622815439.688915-CDS-L-elsbetiae_contig1244:14663..14830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 14664..14830 + |
1691682898.692924-CDS-L-elsbetiae_contig1244:14663..14830 | 1691682898.692924-CDS-L-elsbetiae_contig1244:14663..14830 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 14664..14830 + |
1622815439.6990957-CDS-L-elsbetiae_contig1244:15681..15768 | 1622815439.6990957-CDS-L-elsbetiae_contig1244:15681..15768 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 15682..15768 + |
1691682898.7084188-CDS-L-elsbetiae_contig1244:15681..15768 | 1691682898.7084188-CDS-L-elsbetiae_contig1244:15681..15768 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 15682..15768 + |
1622815439.7090087-CDS-L-elsbetiae_contig1244:16544..16816 | 1622815439.7090087-CDS-L-elsbetiae_contig1244:16544..16816 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 16545..16816 + |
1691682898.7217124-CDS-L-elsbetiae_contig1244:16544..16816 | 1691682898.7217124-CDS-L-elsbetiae_contig1244:16544..16816 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 16545..16816 + |
1622815439.7183807-CDS-L-elsbetiae_contig1244:18077..18202 | 1622815439.7183807-CDS-L-elsbetiae_contig1244:18077..18202 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 18078..18202 + |
1691682898.730114-CDS-L-elsbetiae_contig1244:18077..18202 | 1691682898.730114-CDS-L-elsbetiae_contig1244:18077..18202 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 18078..18202 + |
1622815439.7277143-CDS-L-elsbetiae_contig1244:19685..19789 | 1622815439.7277143-CDS-L-elsbetiae_contig1244:19685..19789 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 19686..19789 + |
1691682898.7380018-CDS-L-elsbetiae_contig1244:19685..19789 | 1691682898.7380018-CDS-L-elsbetiae_contig1244:19685..19789 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig1244 19686..19789 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1244.1990.1 >prot_L-elsbetiae_contig1244.1990.1 ID=prot_L-elsbetiae_contig1244.1990.1|Name=mRNA_L-elsbetiae_contig1244.1990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=265bp
MKGAGAARFGGETGGGGGDPYSLAAPGAEPLKLSHGTTTVALVCEGGVIA AVDSRASMGSFVGSRTTQKVIPVSEHILGTMAGGAADCTFWLRYLGMQAK IFRDRNGFPMPVATAARVLADALLGQRGRGLSVGTMIMGHDRRGGSGSGS GGGGGSGSGGGGGEGGGEGQLFYVDSDGARVKGCYFSVGSGSTYAYSVLD EGYREGMPLQEAADLARRAVRHATYRDAFSGGFINVFRVDASGWTRLAVE DSGFLDFRPPENLE* back to topmRNA from alignment at L-elsbetiae_contig1244:13326..20586+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig1244.1990.1 ID=mRNA_L-elsbetiae_contig1244.1990.1|Name=mRNA_L-elsbetiae_contig1244.1990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7261bp|location=Sequence derived from alignment at L-elsbetiae_contig1244:13326..20586+ (Laminarionema elsbetiae ELsaHSoW15) CTAACGGCTGTAGTATCCGTTTTCTCTTTCCTCTCCCCCTACAGCAACAC
GGCCGTCTTTGCATCTACACCCTTCGAACCGAGCAGCAACCTTTTCCGGG
GTGTGGGTGACGACTCGCCTCTGGCGCGCACAATGAAAGGAGCGGGAGCA
GCACGATTTGGCGGTGAAACAGGTGGGCAGCAAAAACGCGGCGCAATAGA
GTTTGAAATCTCTTCAGAGCACTCGAGCACAGATTATTAGGGCCCACAAT
CCTCAACTCCAATCTGGAAAAAGTGGCTGTGGGGAATTTTCCACTATTTG
CTAGATAAATACCCCCCCCCGCTGCCTGCTCCCACCGCTCTTTTTGAGTG
TTGGGGCTGGCTCTATTGCAGGACTCCTCAGTCCGACCTCTGTGAAGGTC
GTTCCAGGGTGATGCTGCACTGCTGTACTGCTGTTGCAGTACCCTCCTCA
CCGCCCCAAGCTACAGAGACATGGCACAAAATCCGCAAATCGTATAGGTA
TTATCTTGTGTCCTTGTGTATAGATTACCCTTTCAACGAATGAACGGGGG
TTGACGTACTCGATCAATGGCCGGAGCTATCACCGGTGCTGCTGTGTCTC
GACCACGGCAAGGACGCGCGTCTCTCCGCACACCCTCTGAACCGACTTTT
GGAGCTCGACTAGTGCGTAACGAAGGAGGTACCAACACCGAACGATACGT
TTCGGACGGCTTTTGTATCGACGGAATCTTTCGTCTTTCCAACGCCGCCC
TTTTCGGCACCGATATATCCTTGTTGTGGAGTAATCGAGCTTTGAAACTC
AGTCTAGGGGGTGCCCCCAGCTCGCATTCGTACCACGGTACTGGTACTAC
CGTTTATTGACTCTTGTCTGGGACCACCTAAGCAAGAAAATTGACTTTAT
ATGGGAAATAGAGTAAGGGGCTCCCTAACCCTAACCCTAACCGTAACACC
GAGAACCAAAAACACATGAAGCAAACATACTGGATGAAGTATGGAAATCG
GGAAAAAAAACTGCGTACACTGTAGGCTAGTCTACATACTGCTTGTCTAC
ATTACCGAAACTTAGCTTACAGTGGTAGACACAGCAGCTACTGCTGGGTG
CTGCTTCCGCAAGCGGCGTGCGCTTTCATGTCCATGTGTCCCCTAGCAGC
AGAGGGCGGGTCTCGTTTGAGGCGGCCCGAAAAAGAGAGCGGGCGAATGG
GCGGGCCTTTGGTCTGTGGCTTTGTGCCGCATCGTGCCGCAGAGAAAAGA
ATGGGGTCGCCGGACAAAAATTGCCCCCCGCCTTCCTGACACTTGTTGTC
GGTCGACGCTGTTCTTTTCCATGTTCCAAAAACAAAAGGTGGGGGGGGGG
GGGACCCGTACTCTCTGGCAGCGCCGGGGGCGGAGCCCCTGAAGCTGAGC
CACGGAACGACAACGGTCGCGCTGGTTTGCGAGGGTGGGGTGATCGCGGC
GGTCGATTCTCGCGCCAGCATGGGATCTTTCGTCGGCTCGCGGACGACTC
AGAAGGTACATATGTATGTACTCCTATTAATCACCGTGTACTATGTTTGC
GCATGTTGAATGTACGCTTGATTAAACACGGACCACCGCCTATTTACACC
GGAAACTAAGTTTTATCTATGTAGGAAAATAACCCTAACCCCAACGACCG
ACCCCCTTTCCCGTTTTTTTTTTTTTTTTTGGTGACACAAGATACCACAC
CCCCTGGACCGAATTTTAGAGCTCGATTGCTGCGTAACGAAGAAGGTGCC
AGCACCAAACGACACATTTTCGGACAGCCCTTGACTAGATCTTTCCAACG
CCACCCTTTTTTTGGCACTGACACTCTTCTAGCGGGGGAGGGGAGGAATC
GAGCTTTGAAAATCTGTCCAGGGGGTGTGGCATATCTTTTGTCACCTGTG
TACGGTATGCTGACAAGCAACCAGCAGGAGATTCCAATCAAGGCTGCATA
GATTATAATAAAAGTTGTAGTAGTACATTTAATTGTGCTCCGGAATTTAC
GATTCCCAGCCCCCCCCCCCCCCCCTTTTTGGACAACACGGGGAGGATTT
TTCCTGGACCCTCTCTGCCGGGCCCCCTTGTCTCCCCCTTGTCTCGTGTT
GTGTCACGACGCTTCGCAGAAGCACGGTGGTGGTCTCGAGTCCGGCCTGC
TAAATTGTTGGGTTGGGTCGCTCTGTAGCGGATTGCGTATATGCATATTT
AGGGGCTGTTTTATTTTGTCTGGAAACAAGAGATCGACGCGCGACCTGGC
TGCTGTGTTACAAGTGCCACATCTCGGTGTTTGTGTCTCGCGGCTGGTAT
CGACCCGTTGGATGGCTCGGGCGGCGGCGGCGGCCGCGTGTGTTGTTGTG
CGACAGGTGATACCCGTGTCGGAGCACATCCTCGGCACAATGGCGGGAGG
GGCGGCAGACTGCACCTTCTGGCTCAGATACCTTGGCATGCAGGTGTGGA
TGTGTTGCGGATGGCGAGTGCCCCCACGAGTGGCCACTTGGACAGGAGGC
ACTACATGAAGTACAGTTACACCCTCCTTCCTCCTCCCCCGCTCCCACCT
CGAAACTTAAGAGAATGCCTCTCCGTCTCGAGTGGGCGTATTGCAGGAGA
TGCTGCATGGTTTGCCCACAGGTGCCCGGCGACTGAAGTCAAGCAAGAAG
AAGAGGCACACCCCGCCCTCCAAGTGTAATCAACCGCTTGCATTGTTGTT
GTTTCTTCACATATAAAAAAATGTTCTGATCTCTCCACTTAGTACCTCCC
TATGGGCATACTATTCCAACACTTGATGCGGTCAATTCCCGTGGTCACAG
GCTAACTTGTACTACCTAAAAAAAAAAGTGTACCAAAATAAAATGGACCC
GAAGGTCAGCACAGCGATAAAAAATCAAAGACAAATAGTGTTGAGCCCCC
CGCTCCCCCCTCTACACGCTATGCGAGGCGAAAAACAAAATTGGACGAGC
CAGTATCACCAACCGAGCGTATAACCCCCCCTGGTTCTATCTTGGTACCC
CACAATGCCAGGGTGTTCTATGCCAGGGTGTTCTGTGCTGGGTTCTCGCC
GGTCAGGCCCAAAACAATCTATAGTCCTCCTCCCCCTTTTTCGCTCCTGC
TGCTGTTGCTGCTGCTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTGGTG
TGCCAATCTCTGTAAATGCGCGTGTGCTTTCCTGCTAAAAAACAAACAAA
CGAAACAACGACAAAAAAGGCCAAGATCTTCCGAGACCGGAACGGGTTCC
CGATGCCGGTCGCCACGGCGGCGCGCGTGTTGGCGGACGCCCTCCTGGGC
CAGAGAGGGAGGGGGCTCTCGGTGGGGACGATGATCATGGGGCACGACAG
GAGGGGCGGCAGCGGCAGCGGCAGCGGTGGCGGCGGCGGCAGCGGCAGCG
GTGGCGGCGGCGGTGAGGGCGGAGGAGAGGGGCAGCTGTTCTACGTGGAC
AGTGATGGGGCTAGGGTAAAGGGGTGCTACTTCTCTGTGGGGTGAGACGG
TACATAGATGGGAGGAGAGAGAAGGGCAAAAACGCCATCCAGCGGCCCCC
CCTCCCAACCTGGGCGGGTGGGCGGTTGGGTGGGTGTGTGGGCGGAGTAT
ACGGCATTGACATGTTGCTCATGAACACGATGTTTTTCCTTGCAATACAA
TAGGCGTGGTTGAAACCAAGCAACCCCCAAAGAGCTCGTGCTTCGTATGT
CGTATGGTCCGTGCACAACAATTTGTCCAATCTCGTTTTGTGCGATAACT
TTTGTAAAAAAACATTTGGAACGTGAAACAACGATAAAGTCGTGGCCGCG
CATAACAACTTGTCCAATATTTTCCCCTGCACCCAGGTACACTTTTCTTC
ACACAGGGGTGGTTGTTCCGAAATCCCAAAGTACCGGCAAACGCCCTGTC
TCCAGGCGAAGCTAGTGACGGAGACGTTTTTTTTTTTTTCTGTTCCTAGA
CTTTTCTACCACCGAGGGTGGGGAGGGCTGGCTCGCGATGAAAACATCTA
AGGCAGGCACCGCAGGAAGGGGTCCACCCCCCCCCCCCCTCCTGTGTGAC
CCCGGTTGGGTCGTCTAGCTAGTCGTAGTGGAGTATGGGGGCCAGTGGGG
CAGACGGCGAATACACCAATCATAATGGGAGGAGAAAAAACAAATAGATG
TGCCCGAAACTTACCCTTGTTCTGACAGGAGCCGACGTTTTTTTCGGCAC
GATAAAGATATCCCCCAAGAAATCCCAAATCCCGTGCTTCGTGCCTACAT
GTCACATGTGCCGAAACTTGCCCCTGCTCTCGCATGCGCGGGTGTAATCA
ATATACAAAACATATCAGCTAATAATAACCGAAACCTAGTAGCCCACAGT
CATTTGAGATGGGGCTCCGTGGGGTTCAACCGGTATTCCATATACCTAGT
GACGTAATATTGGTCGGGCCGAGTAGAAAAACACCTAAAGTATCCGAAGA
GTATTTTTTTTTTTTCGAGGGGGGGGGGGGGGGGGGGGGGGGGTGTTGTT
TAAAAAATTACACCACCACCCCCCCCCCCTGCCTCCCCGGGGGGGGTGTG
CCCCCCNNNNNNNNNNCTCCCTATATAACAAAAACTACCGTGGGGCGGAC
AGCACATTGGGGGGGTGGGGGGGGGGGGGTTTTGTTTTTGGGGGGGGGGG
GGGGGGGGGGGGGCGGTTGTGTGTAAATAATTACGACACACACGCAGCTC
CCTGACTCCACGGGGTGTGTGTGCGCCCCACGCACCGGTTGAATGAAACA
AGGTCCGGGAGCACGTACGCGTACAGCGTCTTGGACGAGGGCTACCGAGA
GGGCATGCCGCTGCAGGAGGCGGCCGACCTTGCCAGGCGGGCTGTCCGCC
ACGCCACCTACAGGGACGCGTTCTCGGGTAAGACTCACGGCGCCCTTGTG
TGTGTATGTGGGGGGTAGTTATTTTGTTTTTGGTTCTCCTCCCAATATTG
GCATATTTGTCGTCGGCCCCACTGGCCCCCTTCCTCCACTACAATACGAC
TCGCTAGAAGACCTAACCGGGGTCACGCAGGAGGGGCGGGGGGGGGATGG
ACCCCCTCCTGCGGTGCCTGCCTTAGATGTTTTTATCGCGGGCAGGATTC
AACACTCCCCGCCCTCGTAGTGCGACATATGTGGGCGAACCATATCGGTT
GACGCCAAGTTCTTTTGCCTGTCGCAAGTTCTCTCGGACAACTAACTGAC
TATCCTAGCCTTCGTGCAGGACTTGCCTTTTGTGCAAACCGAAACCGTTT
TATCGGAAGGGAGCCAGTCACAAAGTCGATCAAAGGCCTCTCGAACAATC
AATTGATTTACATTTTTTTTTTTGGTTATGTGGGCTTTGCCTTTCGAAAT
CGCCCCCGTCGAAGGGATTCACAAAGAAAGCCTGTCGACCGACGTCCTTG
GTTCTTTCTCCGCATGGGTCTTGAAACGTTCGTTTGCGTTTTCGTCTAGG
CGAGGTTGGTTGGCTCGGGGTGCGCGCCCTGCGGAGAAGGGGGGGGAGGT
TGGAGCGGAGCCGAAACGGTTTTAGTTTGTCGCAGAACCTGTTTTGGCCG
CTTTGGCCGTTGGCGCTGTTGCTATGTATGCACCGGTTGCGAGCAGGGAC
CGTTTCAATCAAGCCCTTGCTGTGTTGTTGGTTGGGACCGCCTACGCCGG
GAATTAAGTTTATCTAGGAAAATAACCCTAACCCTAAATAACCCTGATCC
CAACCACGGACCCCCCTTTCCCGGTTTCCATACTTCATCTCATATGCTAG
CTCAAGACGACAACCCGGCGTAGACTACTACTACTGTGTGCTGTTGTTGC
TCGCCTCTTAGGAGCAGGGGCCGCCGGCCCCCCCGCAAGGACGCCTTCTA
TGCGACCCTGTCACGCCGTTTACGAGAAGACCAAGTTGGTGGCGGTGCTG
ACTAAAAAACATGCCGTCTCTTTTTGATTGGTTGGGTTCGTTTGTTGGTA
AATAGATACATACTTCGTATAAGATAGTCTCCCCGGAGTCCTTGCGGGGC
ACCTCGATACGTCTTCGTCTCAGTACAAGCAAGCAAGCGAGCACGTTTTA
CTTCCTGCCGCTCTATTTAGTGTGTTTTTGTTATCACTCCGTGACACGTA
CCGTACATATCTACGTGCGTGCTTGTCCTCTCTGCTGCGGTGCGCTCGCT
TGCTGGAATGCCTCCTTGCGTGGTCGCACGATAAATAGTTGGAAGCACAA
AAAATAAAAACTCTAAATAACTGTGTGTATATATATATATACCCTCACAA
AGGTATACGACTTGGGGTTAAAGAGACAGCACAAAACAAATAAACACTTG
GCGACCGACGGTTTCATCGCAATTTTTTTTTACCGGAATCGACCTACTAT
TGCTGTTCAGGGGGCTTTATCAACGTGTTCCGGGTGGACGCCTCCGGCTG
GACCCGACTAGCCGTCGAGGACTCCGGATTTTTGGACTTCCGACCACCCG
AGAACCTGGAGTAGAGTAGTGCTGGCTGACAAGCTCAGCGGCGCCGGCGG
GGGGATGATGACGGGGGGACGAGGGGACGAAAGGAGAGAGTGGTGGCGAT
GGATGACGGGCGAAACTGTGTGCGCCGCCGCCCCACACACAGCCTCGTGT
GAAGGAGAAGAAGCCTGCCGCGGTAAAAATGGGGGGGGCTGTGGTCCGGA
CAGCCGGCTTCCGTCGGCGGTGGAGATGATGGGGAGGGGAAGATGACTCG
ACAGAAGAGCACGCCTGTCGATAACAGCAGGGTGGAGTGATCGCGATGCT
TTGCAGGCACATATGCATGCATGCCTTGGAGGGTTTCCGCTAACCCGAAG
GCGTGTTCGTTCGTGGTTTCGCTGCTGCTGCTGCTGCTGCGGCGGTGTGT
ATCGTGGCCCGCCACTCCTTTTTTTCGGCGAAAACCCCACGAGTCTTGCT
CGCCGGCTTTTGTACCTGCGGTGTGAAAGTCTACCGTTGGTTTGGTAGAT
GTATCGAGCCCACACGCGGAAGACAGGTAGGTACCACATGGCTTTAATCA
AGATAGACTCCCTACGTATTGCACGCGCCGTTGCAGATACAGCCGGCGCC
GTATGAGCCGTGTTATTTCCAGGAGGGTTGTCCACCTCCATATGGTCTGG
AGGTGTCTGCATGCCCACCCAGCGGCGCATGACGAATGCTCGTGTGTGTG
TGTGTGTGGTAGAGACTACACGCTGCCATACGCCAAGGCGTGAACACAGG
GGCTCGGTGTTTTTTGGGGGGGGTGGGGTGGTATATGGCGCGCCGATTTT
TTTCTTCCAGG back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig1244:13326..20586+ >mRNA_L-elsbetiae_contig1244.1990.1 ID=mRNA_L-elsbetiae_contig1244.1990.1|Name=mRNA_L-elsbetiae_contig1244.1990.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1590bp|location=Sequence derived from alignment at L-elsbetiae_contig1244:13326..20586+ (Laminarionema elsbetiae ELsaHSoW15) ATGAAAGGAGCGGGAGCAGCACGATTTGGCGGTGAAACAGATGAAAGGAG CGGGAGCAGCACGATTTGGCGGTGAAACAGGTGGGGGGGGGGGGGACCCG TACTCTCTGGCAGCGCCGGGGGCGGAGCCCCTGAAGCTGAGCCACGGAAC GACAACGGTCGCGCTGGTTTGCGAGGGTGGGGTGATCGCGGCGGTCGATT CTCGCGCCAGCATGGGATCTTTCGTCGGCTCGCGGACGACTCAGAAGGTG GGGGGGGGGGGGACCCGTACTCTCTGGCAGCGCCGGGGGCGGAGCCCCTG AAGCTGAGCCACGGAACGACAACGGTCGCGCTGGTTTGCGAGGGTGGGGT GATCGCGGCGGTCGATTCTCGCGCCAGCATGGGATCTTTCGTCGGCTCGC GGACGACTCAGAAGGTGATACCCGTGTCGGAGCACATCCTCGGCACAATG GCGGGAGGGGCGGCAGACTGCACCTTCTGGCTCAGATACCTTGGCATGCA GGTGATACCCGTGTCGGAGCACATCCTCGGCACAATGGCGGGAGGGGCGG CAGACTGCACCTTCTGGCTCAGATACCTTGGCATGCAGGCCAAGATCTTC CGAGACCGGAACGGGTTCCCGATGCCGGTCGCCACGGCGGCGCGCGTGTT GGCGGACGCCCTCCTGGGCCAGAGAGGGAGGGGGCTCTCGGTGGGGACGA TGATCATGGGGCACGACAGGAGGGGCGGCAGCGGCAGCGGCAGCGGTGGC GGCGGCGGCAGCGGCAGCGGTGGCGGCGGCGGTGAGGGCGGAGGAGAGGG GCAGCTGTTCTACGTGGACAGTGATGGGGCTAGGGTAAAGGGGTGCTACT TCTCTGTGGGGCCAAGATCTTCCGAGACCGGAACGGGTTCCCGATGCCGG TCGCCACGGCGGCGCGCGTGTTGGCGGACGCCCTCCTGGGCCAGAGAGGG AGGGGGCTCTCGGTGGGGACGATGATCATGGGGCACGACAGGAGGGGCGG CAGCGGCAGCGGCAGCGGTGGCGGCGGCGGCAGCGGCAGCGGTGGCGGCG GCGGTGAGGGCGGAGGAGAGGGGCAGCTGTTCTACGTGGACAGTGATGGG GCTAGGGTAAAGGGGTGCTACTTCTCTGTGGGGTCCGGGAGCACGTACGC GTACAGCGTCTTGGACGAGGGCTACCGAGAGGGCATGCCGCTGCAGGAGG CGGCCGACCTTGCCAGGCGGGCTGTCCGCCACGCCACCTACAGGGACGCG TTCTCGGGTCCGGGAGCACGTACGCGTACAGCGTCTTGGACGAGGGCTAC CGAGAGGGCATGCCGCTGCAGGAGGCGGCCGACCTTGCCAGGCGGGCTGT CCGCCACGCCACCTACAGGGACGCGTTCTCGGGGGGCTTTATCAACGTGT TCCGGGTGGACGCCTCCGGCTGGACCCGACTAGCCGTCGAGGACTCCGGA TTTTTGGACTTCCGACCACCCGAGAACCTGGAGTAGGGGGCTTTATCAAC GTGTTCCGGGTGGACGCCTCCGGCTGGACCCGACTAGCCGTCGAGGACTC CGGATTTTTGGACTTCCGACCACCCGAGAACCTGGAGTAG back to top
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