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Homology
BLAST of mRNA_L-elsbetiae_contig12427.1981.1 vs. uniprot
Match: A0A6H5K079_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K079_9PHAE) HSP 1 Score: 147 bits (371), Expect = 1.190e-38 Identity = 101/124 (81.45%), Postives = 104/124 (83.87%), Query Frame = 2
Query: 2 GGGGVSEVTFFTHLTFSAFLPDFQEMEACRHFVGPLHILQELKWAVQRTLGSFQED-EVLQEAAARMRAGSPGG-ADWGHVLSRRRXXXXXXXXXXXXXXXXXXXXXXXXXX---GEEETEGGT 358
G GGVSEVTFFTHLTFSA+LPDFQEMEACRHFVGPLHILQELKW V+RTLGSFQED EVL + A RM AG GG ADWGHVLSRRR XXXXXXXXXXXXXXXXXXX GEEETEGGT
Sbjct: 1067 GAGGVSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHDGAPRMGAGGAGGRADWGHVLSRRRSXXXXXXXXXXXXXXXXXXXGAARVDTSAGEEETEGGT 1190
BLAST of mRNA_L-elsbetiae_contig12427.1981.1 vs. uniprot
Match: D7FSJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSJ0_ECTSI) HSP 1 Score: 133 bits (335), Expect = 8.330e-34 Identity = 95/120 (79.17%), Postives = 98/120 (81.67%), Query Frame = 2
Query: 14 VSEVTFFTHLTFSAFLPDFQEMEACRHFVGPLHILQELKWAVQRTLGSFQED-EVLQEAAARMRAGSPGG-ADWGHVLSRRRXXXXXXXXXXXXXXXXXXXXXXXXXX---GEEETEGGT 358
VSEVTFFTHLTFSA+LPDFQEMEACRHFVGPLHILQELKW V+RTLGSFQED EVL A RM AG GG ADWGH+L R XXXXXXXXXXXXXXXXXXXX GEEETEGGT
Sbjct: 741 VSEVTFFTHLTFSAYLPDFQEMEACRHFVGPLHILQELKWVVERTLGSFQEDDEVLHHGAPRMGAGGAGGGADWGHILPRXXXXXXXXXXXXXXXXXXXXXXGAARVDTSAGEEETEGGT 860
BLAST of mRNA_L-elsbetiae_contig12427.1981.1 vs. uniprot
Match: A0A835YHQ7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHQ7_9STRA) HSP 1 Score: 59.3 bits (142), Expect = 8.570e-8 Identity = 30/59 (50.85%), Postives = 38/59 (64.41%), Query Frame = 2
Query: 17 SEVTFFTHLTFSAFLPDFQEMEACRHFVGPLHILQELKWAVQRTLGSFQEDEVLQEAAA 193
SEV F+THL+FS LP ++ +A R+ +GPLHILQEL+ V RTL D AAA
Sbjct: 455 SEVYFYTHLSFSENLPALEDAQASRYLLGPLHILQELRRVVDRTLEYGHSDAARDAAAA 513
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 366 |
| Cds size | 366 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815437.2834826-CDS-L-elsbetiae_contig12427:978..1092 | 1622815437.2834826-CDS-L-elsbetiae_contig12427:978..1092 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 979..1092 - |
| 1691682897.9963915-CDS-L-elsbetiae_contig12427:978..1092 | 1691682897.9963915-CDS-L-elsbetiae_contig12427:978..1092 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 979..1092 - |
| 1622815437.2948263-CDS-L-elsbetiae_contig12427:2468..2599 | 1622815437.2948263-CDS-L-elsbetiae_contig12427:2468..2599 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 2469..2599 - |
| 1691682898.0053895-CDS-L-elsbetiae_contig12427:2468..2599 | 1691682898.0053895-CDS-L-elsbetiae_contig12427:2468..2599 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 2469..2599 - |
| 1622815437.305814-CDS-L-elsbetiae_contig12427:4742..4863 | 1622815437.305814-CDS-L-elsbetiae_contig12427:4742..4863 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 4743..4863 - |
| 1691682898.0136046-CDS-L-elsbetiae_contig12427:4742..4863 | 1691682898.0136046-CDS-L-elsbetiae_contig12427:4742..4863 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12427 4743..4863 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12427.1981.1 >prot_L-elsbetiae_contig12427.1981.1 ID=prot_L-elsbetiae_contig12427.1981.1|Name=mRNA_L-elsbetiae_contig12427.1981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
RGRGRERGDFLHAPDVQRVPAGFPGDGGVPALCGPASHLAGAQVGGAAHP
GLVPGGRGAAGGRGEDAGGEPRRRRLGPRLVEEKIVEVGEEIVDDGRREE
GGRRGGGHQRGRGRDGRRHRR* back to topmRNA from alignment at L-elsbetiae_contig12427:979..4863- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12427.1981.1 ID=mRNA_L-elsbetiae_contig12427.1981.1|Name=mRNA_L-elsbetiae_contig12427.1981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3885bp|location=Sequence derived from alignment at L-elsbetiae_contig12427:979..4863- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCGGGGGCGTGAGCGAGGTGACTTTCTTCACGCACCTGACGTTCA
GCGCGTTCCTGCCGGATTTCCAGGAGATGGAGGCGTGCCGGCACTTTGTG
GGCCCGCTTCACATCTTGCAGGTGCGTGTGTGAGGGGGGGGGGGGGGGTT
AAAGGGGGGGGTGAGGGGGGGAGAGCGGGGGAGGGGGGGGGGGTGCCGGT
GTTTCTGTGTTTTGGTGTGTTTNNNNNNNNNNGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGGGGGGGGGGGGCTTAGAGGGGCGTGTGAGTGCGTGAGAGCGT
GAGAGCGTGAGAGCGTGCCGGTACTTCCGTGTTTGTGTGTGTTTGTGTGT
GTGTGTGTGTTACGGCAGTTTGCGTCTTCGAACATCCATCAATTCACCCT
CCAACCCACCCTATTACTGTGTTTTTTATTTGTTTTTTGTATGCTCCAGT
TTTGAGGTATTGCATGTATGTACCATGTCTGATCCCTATTGCACGGCGTC
AGTACTTGTGCTGCTGTAATTTGTTTTTTTCTTCGGAGGAACAGAAACGT
GTGTTCGGCTCCCAAAAATATGGTAGTCCCCATGCTCAACTCTGCTCGCC
CACATCGACAAACCCTTAACAAGTAGACATCTGCATGCATACATAGATAC
ATACATACATGCATATATAAGTGCACGGTTGTTTCGTATCTTGGATCTTT
ACGTCATGGTGAGGAGTTTTTTTTCAAAACAAAAACGAAAGCACGGGGTA
TGTAGGCGCGCAGCGGAACGGAGTGTTTTTGTTTCGCAGGAAAATCTCCT
CAAAGAGTTTTTTCTCGAAAAACAACTGTCGAGATGGATAAATTCGGCTC
CTGTGTGTGTGTGTGTGTATGTGTGTGTGCGTGTGCACTTAAAATAACAC
TCCCTGCTACTGCGACACATGGATTAAATACTGTTTCAATTCGTTGTCTG
TGATAAAGTGCGTGCGTGAGTGCGTGCGTGTCGCGTGCGTGCGTTGGCGC
CGATTTATACCCCTTTTATACCCCTTGGGGACAGGCTCGGGTACGGGATA
TGTGTCGCACAAGCTCAGGCGCAAGTGCAGGGAAAACCTCTTGGCGCCGT
TCTTTCCCCAAAACAAAGCATAGTTCCGTATTCACACGCCATTGTTCCTC
TAAATAGAGCACGGTCTTCAGACGTTGCCCTCTTGGACGCCACCTCTAGC
ATCATCCCACGATTGTGTACAAAGCACACACGATTATGTACACGCACACG
ACCGACACACGACGGAAGGGGGAGAAGCCCACAGCAGTAGCATAGCGCAG
CAGTCTCTCCTGTAGTGAGTAGTACTACACACAAAAATACCCTCTCTCTG
CTGCACAGCGGAGCGAAGACTACAGCTGGTATTAGTTGGTGGGTGGGGGT
ATTATGACGATAGTATAGGAGAGGGCGGGTTTTTGAGTTATTGGCCTCCT
GCACACTGCAGGCATTTATTTTTGCATCGCGGGTTTAATTAATCCTGTTG
TCATGATGCGAAAATATCTCTCCCGCTCCCGGGGGGTCTAGTATAGAGTT
CAGCAGTCTTTGTCCTCAAATCGAATAAACATAAAACGTGGCTGACGGGG
TTGTCACAGCGGTGCCTACCTACTGCAGTTTTTTTTTTTGCATCACAGGT
TGGGTATATATCTCTTGTAGTCTACCGTAATCAAGCGAAGGTTCGCACCC
CCGTGTTGGCATTTTTCTAAAGCGTATTTCTCCACAACCAGGAGGGTGCG
AACACTAACTGGTACCTCTCTGGAAAGCCCCCGACGAGACGTTTCGAAAA
TCACCCTTTTCGGCAGTGGTACCCTCCTGGTTGTGGAGAAAAACGCTGTA
GAAAAACGCTAACACGGGGGTGCGAGCCTTCGCATGATTACTGTATAGAT
ATAAAGTATATGATGTATATATATTTATTTTTGTTTTTTTCTTCTTCACA
TTTATTTGCCAGTGCTCGATGGACTCCTTGCCACGAGGGCATCCTTCAAG
AGTTGAACTGGACCGTGGTCGTGGTTATTGCTGTGTTGTGATAAATAATG
CGAAAAAGCAATCGCTTCCAGGAAGGGGTCTAGTAATGCAGCATTTACAT
AGTCTAAATATTGAATATTGATATATTGATAGGTCCTAAAATCGAATAAA
TATTTGATATTTATAGATATGTAATACGAAGTTCTACATACTTCCCGACA
ACCAACCAAATCAGGAGCTCAAGTGGGCGGTGCAGCGCACCCTGGGCTCG
TTCCAGGAGGACGAGGTGCTGCAGGAGGCCGCGGCGAGGATGCGGGCGGG
GAGCCCCGGCGGCGCAGACTGGGGCCACGTCTTGTCGAGGAGAAGGTGAG
TTATAGGGAGGAGGAAGAGGTGGTGGTTGTGTGGTGTGATGTGGTGGGGT
CGATCGGTCTGACAAGAACGGAGGGGGGGCGCAACAAACGTGGGCATGAT
TATTTACTGTCTTGTGCATTTATGGATCCCCTTAAAAAACTTTTCTTGAT
TCTTGCTGTTGTTGTTGTTGCTGAGGGCAGAGCAGCAGAGCCAGCCGCTT
GGAGGCCGTTTGGACAGTAGTTAGTCCACGCAGGGTTGTCATCTTTTCAT
CTTCAGCTAACATCTGGGATAAAGTATGTTTTCATCTTTTCATCTTCAGC
CAACATATGGGATAAAGTGTGTTTTCATCTTTTCATCTTCAGCCAACACA
TGGGATAAAGTGTGTTTTCATCTTTTCATCTTCAGCTAACATATGGGATA
AAGTGTGTTTTCATATTTTCATCTTAAGCTAACACATGGGAATAAAGTGT
GTTTTCATCTTTTCATCTTCAGCCAACATATGGGAACAAAGCGTTATTTT
CATATTTTCATCTTCAGCTAACATATGGGAATAAAGTGTGGAGACCGGGG
AAGGGGGGTCGGTGGTTGGGGTTAGGGTTATGTAGGGGTATTTTTCCTAG
ATGCACTTCATTTCCGGCGTACAGGCGGTCCGGTCCCGCTCGGAGGTTAA
GGGGTTGGTTGGTTTCTGGTTGGTTGGTTGTTTCGAGATATTTAGGTGCG
GGGCGGGCGGGCGGGCCTGGGTGGCTTTGGCGTGTCGGCGTGGGTGCAGC
AGCAATGTGCTCAGAGTGCATCACCAGCTGGAAGTAAAGGGAAAGGGAAA
GGGATCGATTAGGGGCAGAGGAGAGGCAGGTGGGCACGAGGGCGGCTGTG
CCTCGGTCGGTCAGGTTCGGCGCAGCCGCCGTGGCCGCTGCCGGCAAACT
CTCATATCACGATCACGATCACGATGTTTCTTTTTTTTCTTTTTCTCTTT
TCTCTCCCATCATTGGCATATTTGTCGTCTGCCCCACTGGCCCCCTTCCT
CCACTACGACTAGCTAGACGACCCAACCGGGGTCACACAATGTGATATCG
TCTGACTCGGCCGCCCTGGCCTCAACCCGCCGGCCGTGCGGCACCCGTCA
GAACCAAAACTATACTTCGTGTTCCGGTCCATATTTATGTATAGGCAGAC
TAACTACTTTGATCAAACCCCCGTGCGCAGTGAAAGTGAATGCAGGTGGG
AAGCCGTCGAACTTTGAGAAAGTCTTGATGTTTTGGCCGCGCCGACCGCC
GATCGCCGACGCCGTCATCATGCGTTGCCCCCCCCCCCCTCCCCCCCGTC
CACCCGCGTGCGTAAATAAATGAATCGCCGTCGCCGTTGATATTTTCCTC
TCTTCCTCTTTCCTGTTTTAGATCGTCGAGGTCGGAGAGGAGATCGTCGA
TGACGGCAGAAGAGAGGAGGGCGGCCGGCGGGGCGGGGGACACCAGCGCG
GGCGAGGAAGAGACGGAAGGCGGCACCGCCGGTGA back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12427:979..4863- >mRNA_L-elsbetiae_contig12427.1981.1 ID=mRNA_L-elsbetiae_contig12427.1981.1|Name=mRNA_L-elsbetiae_contig12427.1981.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig12427:979..4863- (Laminarionema elsbetiae ELsaHSoW15)
CGGGGGCGGGGGCGTGAGCGAGGTGACTTTCTTCACGCACCTGACGTTCA
GCGCGTTCCTGCCGGATTTCCAGGAGATGGAGGCGTGCCGGCACTTTGTG
GGCCCGCTTCACATCTTGCAGCGGGGGCGGGGGCGTGAGCGAGGTGACTT
TCTTCACGCACCTGACGTTCAGCGCGTTCCTGCCGGATTTCCAGGAGATG
GAGGCGTGCCGGCACTTTGTGGGCCCGCTTCACATCTTGCAGGAGCTCAA
GTGGGCGGTGCAGCGCACCCTGGGCTCGTTCCAGGAGGACGAGGTGCTGC
AGGAGGCCGCGGCGAGGATGCGGGCGGGGAGCCCCGGCGGCGCAGACTGG
GGCCACGTCTTGTCGAGGAGAAGGAGCTCAAGTGGGCGGTGCAGCGCACC
CTGGGCTCGTTCCAGGAGGACGAGGTGCTGCAGGAGGCCGCGGCGAGGAT
GCGGGCGGGGAGCCCCGGCGGCGCAGACTGGGGCCACGTCTTGTCGAGGA
GAAGATCGTCGAGGTCGGAGAGGAGATCGTCGATGACGGCAGAAGAGAGG
AGGGCGGCCGGCGGGGCGGGGGACACCAGCGCGGGCGAGGAAGAGACGGA
AGGCGGCACCGCCGGTGAATCGTCGAGGTCGGAGAGGAGATCGTCGATGA
CGGCAGAAGAGAGGAGGGCGGCCGGCGGGGCGGGGGACACCAGCGCGGGC
GAGGAAGAGACGGAAGGCGGCACCGCCGGTGA back to top
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