mRNA_L-elsbetiae_contig1242.1979.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1242.1979.1
Unique NamemRNA_L-elsbetiae_contig1242.1979.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1242.1979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1242contigL-elsbetiae_contig1242:23696..26322 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size382
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1242.1979.1prot_L-elsbetiae_contig1242.1979.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1242 23747..26210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.685615-UTR-L-elsbetiae_contig1242:23695..237461622815436.685615-UTR-L-elsbetiae_contig1242:23695..23746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 23696..23746 -
1691682897.5745742-UTR-L-elsbetiae_contig1242:23695..237461691682897.5745742-UTR-L-elsbetiae_contig1242:23695..23746Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 23696..23746 -
1622815436.7192714-UTR-L-elsbetiae_contig1242:26210..263221622815436.7192714-UTR-L-elsbetiae_contig1242:26210..26322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 26211..26322 -
1691682897.6112788-UTR-L-elsbetiae_contig1242:26210..263221691682897.6112788-UTR-L-elsbetiae_contig1242:26210..26322Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 26211..26322 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.695067-CDS-L-elsbetiae_contig1242:23746..237901622815436.695067-CDS-L-elsbetiae_contig1242:23746..23790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 23747..23790 -
1691682897.5856166-CDS-L-elsbetiae_contig1242:23746..237901691682897.5856166-CDS-L-elsbetiae_contig1242:23746..23790Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 23747..23790 -
1622815436.7047927-CDS-L-elsbetiae_contig1242:26035..262101622815436.7047927-CDS-L-elsbetiae_contig1242:26035..26210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 26036..26210 -
1691682897.5985754-CDS-L-elsbetiae_contig1242:26035..262101691682897.5985754-CDS-L-elsbetiae_contig1242:26035..26210Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 26036..26210 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1242.1979.1

>prot_L-elsbetiae_contig1242.1979.1 ID=prot_L-elsbetiae_contig1242.1979.1|Name=mRNA_L-elsbetiae_contig1242.1979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=73bp
MTEQVYTGRLCPSTAESYVGDIRTCLKSWSKIGPRRWGQREERSWTAGSW
SCVQRRRPRKMSLGGNGRYGQQ*
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mRNA from alignment at L-elsbetiae_contig1242:23696..26322-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1242.1979.1 ID=mRNA_L-elsbetiae_contig1242.1979.1|Name=mRNA_L-elsbetiae_contig1242.1979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2627bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:23696..26322- (Laminarionema elsbetiae ELsaHSoW15)
ATTCGACGTTCGGTTCGACTTCCATCCGCATCGCAGGCAATGTAGTAGGT
TGCCGCTGCATTATCGAGATACCATATTATCGCCGGAACTACCACACCCC
TGATACTGCGTAATGACCGAGCAGGTCTACACCGGCCGCCTGTGTCCTTC
TACCGCCGAAAGCTATGTCGGGGACATTAGAACCTGCCTCAAGAGTTGGT
CGAAGATCGGGCCAAGAAGATGGGGCCAGAGGGAAGAGAGGTCATGGACC
GCAGGAAGTTGGTCCTGCGTACAGCGACGACGACCTCGTAAGTACACCCC
GTGTTACTTGATTGTGCCATTGAAGCAGAGGGCTCGAACAGTTTGCACGG
CTTCCTGGGCTGGTGCATACTGCTTGCTGTATACTTTCGTCTAGATAGCT
TATCTAAAAGTAGTACGTACATACAAGGTTCCCCTTCGGGAGGTCAGCGC
GTGCCTCCCGGGGGTGACGCAAGTCGAAATACCCATCAACAACGTAGGAC
ACGAGGTACAGCCCTTCACACAAAAAGTGTTGCACGAAAAAAAAAACGCA
CGAAAAAGGCGTTTAAAAACAAAAACAAGGCTGTGCCGAGATTCGAACCC
GCGTCCGGATATTGGATGGTTTGGACGGAAGAAATTCCCCGTAACATCCC
GCGAGAATTTGTTTTTGCATGTGCCATCTGCCGTGTGTGGCCTGCAACAT
CTGCGTTTTACTCTCGAAATATGTGCACACCGTCTTGCTGTGTGTGGACG
GGCATGCAGCCAACAGTGTGAACGTACGCACATGCGTGAAGAGCAGAAAG
AGACTCCGAGTAAAAAGAGCAAACGCCTGTTTTAGTTTTTACGGAATTGG
TACCCCGCGAAATAGAGCCAGTTTCAGCGGCTTTCGGTGGCCATAACTCG
CGCCACCGGCTTCAGATGAACCCCACACACGGCTTGATGTTGAGAAGTGC
GCGAAGAGGGTTTGGCGCCGTGTGCGCACGGCGCACAACCCCGTCTCAAC
GTAATTTCGCGCAAAAAGATTTAGCGATTTCCCGCAAAAGCTAACAACGG
ATCACAGATACGGTGGGGCACGTCTCATCTATACGTTGCGCCGTGGCTCT
TACTGTTGATCGCGGTATTGTAGGGCACACAACCCCGTTTCAAGGTAATT
CCCGCAAAATGTAACAACGGATCACAGATACGGTGGGGAACGTGTCTCAT
CTGTATGTTGCGCCGTGGCTCTTGCTGTTGATCGCGGTATATTATACGCC
GCTTATTATATACAGCGGCTTAATGTTCTGCGAACAGAACAAAATCACTG
TTTACCATGTAACGGAACAGAAAGTAAAGCAACGTTAACACATTTGGCTC
GAAAGAGGAAGATTTGTTTCTAAACGTTTTTTTTGCTACATCAAGTTTTT
AGAGGAGCTATTCATGACTGCGGTAAAACTCTGCGCTGGTGCCAATCTTG
TGAGCTTGTTTGAAGAAAGTCGTAACTCTCTGTAGCGATTAGATACAGCG
ATTTTTATGGTGGGCGACTGATGTTTACGAATGAATGAGAACATCAACAT
TGCGACGGACTCTTTTGCGGGTCAACGCAACGGAAATGAACATTTAAAAT
TCTGTTGGTTGAATTAGAACACTTTTTTTGTTTGAATTCGGACCAATATC
AGATTTTGAGATCGGTTATGGTTGGTGGTACGTAGACGTTGTGTGCCGTG
AAGAACTGCTTGCTGTGCTTGCTTGTTTTTGGTGTGTGCTTTCGAGATGA
TATAATCCTGCCATGTCGCGCACACAACACACGTAATAAATGCTCCGCAA
TAAAGAGCGCACACGCCTGCTCTAGTTTTTCCGGAATCGGTACCCCGCAA
AATAGAGCCAGTTTCGGCGGCTTTCGGCGGCCATAACTCGCGCCACCGGT
GTCGCATGAACCCCACACACGGCTGATAATGTACCGACGGGTCCTCTGAG
TGTCGTCCAGAAAAAAGGTTGAGACAAAACGATGTTCCAGTGGAGGAAAT
TGCACAGAAGCAGTAAAAAAGACGAAATGGTACTTAGACATATGATAGAT
ATCCATAGAGTGAATAGATACATCGTTGTCGAAATATGCAGGTATCCTCA
ACGAAAAAATAGACAAAACATCTCACGGGAGTCTCGTCTCCAATGCGGGC
TGGGTTCCATTTTCGATAAACCGTTTTTCTTTCAAAAATATCATCCATCT
ATGTATCTGTTTTGTTAGATAGACTATTTCTCTATTATTTAGGAGTATTT
TCAAGAGATTTATCTAATCTAGAATAGTCTAAATATTCTCTGATTTATTC
TCAACATATGTCCCATACAGTCTTTGGTACTGTACAGGTACTACGTAGAT
AGATAATAATGTTACGCCTCGATGGCCGGTGTACAAGTCGCAATTTTTCA
AAGCTATGGAGATAGCACCGCATTTCTGTGAGCTATGTACATACACATCT
ACCTGAAGAGTGCGTGTGTGGTCTATTCTTGCATACCAAAAATGCCGATG
CCGTTTGCATGCTGCATGACTGGGACACGCAGGAAAGATGTCTCTCGGAG
GAAATGGACGCTATGGACAGCAGTAGTGACAATGGCAGCGACGTCAGCGA
CGACAGCGACGAACCCGTCGATGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1242:23696..26322-

>mRNA_L-elsbetiae_contig1242.1979.1 ID=mRNA_L-elsbetiae_contig1242.1979.1|Name=mRNA_L-elsbetiae_contig1242.1979.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=438bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:23696..26322- (Laminarionema elsbetiae ELsaHSoW15)
ATGACCGAGCAGGTCTACACCGGCCGCCTGTGTCCTTCTACCGCCGAAAG
CTATGTCGGGGACATTAGAACCTGCCTCAAGAGTTGGTCGAAGATCGGGC
CAAGAAGATGGGGCCAGAGGGAAGAGAGGTCATGGACCGCAGGAAGTTGG
TCCTGCGTACAGCGACGACGACCTCATGACCGAGCAGGTCTACACCGGCC
GCCTGTGTCCTTCTACCGCCGAAAGCTATGTCGGGGACATTAGAACCTGC
CTCAAGAGTTGGTCGAAGATCGGGCCAAGAAGATGGGGCCAGAGGGAAGA
GAGGTCATGGACCGCAGGAAGTTGGTCCTGCGTACAGCGACGACGACCTC
GAAAGATGTCTCTCGGAGGAAATGGACGCTATGGACAGCAGTAGGAAAGA
TGTCTCTCGGAGGAAATGGACGCTATGGACAGCAGTAG
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