mRNA_L-elsbetiae_contig1242.1978.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1242.1978.1
Unique NamemRNA_L-elsbetiae_contig1242.1978.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1242.1978.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1242contigL-elsbetiae_contig1242:22864..23567 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size704
Cds size405
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1242.1978.1prot_L-elsbetiae_contig1242.1978.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1242 22991..23395 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.754417-UTR-L-elsbetiae_contig1242:22863..229901622815436.754417-UTR-L-elsbetiae_contig1242:22863..22990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 22864..22990 +
1691682897.6316748-UTR-L-elsbetiae_contig1242:22863..229901691682897.6316748-UTR-L-elsbetiae_contig1242:22863..22990Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 22864..22990 +
1622815436.7749615-UTR-L-elsbetiae_contig1242:23395..235671622815436.7749615-UTR-L-elsbetiae_contig1242:23395..23567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 23396..23567 +
1691682897.6517906-UTR-L-elsbetiae_contig1242:23395..235671691682897.6517906-UTR-L-elsbetiae_contig1242:23395..23567Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1242 23396..23567 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815436.7651927-CDS-L-elsbetiae_contig1242:22990..233951622815436.7651927-CDS-L-elsbetiae_contig1242:22990..23395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 22991..23395 +
1691682897.6430576-CDS-L-elsbetiae_contig1242:22990..233951691682897.6430576-CDS-L-elsbetiae_contig1242:22990..23395Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1242 22991..23395 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1242.1978.1

>prot_L-elsbetiae_contig1242.1978.1 ID=prot_L-elsbetiae_contig1242.1978.1|Name=mRNA_L-elsbetiae_contig1242.1978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=135bp
MDASPVKLRFDSVADTAARGGSTEICVSRFGSSLPGLPGEEGRGECSLTD
RFCGGIPSATTIRSRSLRSACLATDARHSIEPGLFSTEESLRMRSCDTNA
LAVVGPSWSARDASIVPAQERRANTSAGRVVVSS*
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mRNA from alignment at L-elsbetiae_contig1242:22864..23567+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1242.1978.1 ID=mRNA_L-elsbetiae_contig1242.1978.1|Name=mRNA_L-elsbetiae_contig1242.1978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=704bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:22864..23567+ (Laminarionema elsbetiae ELsaHSoW15)
CTGCTGCGACGTGAAGATGCGGCCGGTCTCGAACACACGCGAAGCCGATC
GTAGTTCCGGCTGAGAACCTATCTCCTTCGGGATACTTATTTCCCCGTTA
TCAACAAGTGAAACCGGTGGGTTCTGCATGGATGCATCCCCTGTAAAGCT
CCGATTCGACTCGGTAGCTGACACTGCTGCGCGGGGTGGTTCTACTGAGA
TTTGTGTGTCGAGGTTTGGTTCAAGTCTCCCCGGGCTCCCGGGCGAAGAA
GGCAGAGGAGAATGCTCCTTAACCGATAGATTTTGTGGAGGAATTCCTTC
AGCGACGACCATTCGGTCGCGCTCGTTGAGATCGGCTTGTTTAGCCACCG
ACGCTCGACACTCCATAGAGCCGGGCTTGTTTAGTACTGAAGAATCGCTG
CGTATGCGGTCATGTGACACAAATGCCCTCGCCGTCGTAGGTCCGAGCTG
GTCAGCAAGAGATGCCTCTATTGTGCCTGCGCAGGAGAGGCGAGCAAATA
CCTCCGCAGGGAGAGTCGTTGTTTCGAGTTGAGTTTTGTTTCTGCTGGGA
GAGAAGAGCGCTCCGGCGGACGAATACCCCTGCTCCTGGTCAGGCACTCC
CACTGTTGTGCTCTCTTGCATTTTTTGCTCCAAGCTTGGGAAAGAGATAA
CGAGGCTAGACACGCCTTGAAGTGTGGCTGTTGCTTCTTCCATGTACTGG
AGCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1242:22864..23567+

>mRNA_L-elsbetiae_contig1242.1978.1 ID=mRNA_L-elsbetiae_contig1242.1978.1|Name=mRNA_L-elsbetiae_contig1242.1978.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=810bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:22864..23567+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGATGCATCCCCTGTAAAGCTCCGATTCGACTCGGTAGCTGACACTGC
TGCGCGGGGTGGTTCTACTGAGATTTGTGTGTCGAGGTTTGGTTCAAGTC
TCCCCGGGCTCCCGGGCGAAGAAGGCAGAGGAGAATGCTCCTTAACCGAT
AGATTTTGTGGAGGAATTCCTTCAGCGACGACCATTCGGTCGCGCTCGTT
GAGATCGGCTTGTTTAGCCACCGACGCTCGACACTCCATAGAGCCGGGCT
TGTTTAGTACTGAAGAATCGCTGCGTATGCGGTCATGTGACACAAATGCC
CTCGCCGTCGTAGGTCCGAGCTGGTCAGCAAGAGATGCCTCTATTGTGCC
TGCGCAGGAGAGGCGAGCAAATACCTCCGCAGGGAGAGTCGTTGTTTCGA
GTTGAATGGATGCATCCCCTGTAAAGCTCCGATTCGACTCGGTAGCTGAC
ACTGCTGCGCGGGGTGGTTCTACTGAGATTTGTGTGTCGAGGTTTGGTTC
AAGTCTCCCCGGGCTCCCGGGCGAAGAAGGCAGAGGAGAATGCTCCTTAA
CCGATAGATTTTGTGGAGGAATTCCTTCAGCGACGACCATTCGGTCGCGC
TCGTTGAGATCGGCTTGTTTAGCCACCGACGCTCGACACTCCATAGAGCC
GGGCTTGTTTAGTACTGAAGAATCGCTGCGTATGCGGTCATGTGACACAA
ATGCCCTCGCCGTCGTAGGTCCGAGCTGGTCAGCAAGAGATGCCTCTATT
GTGCCTGCGCAGGAGAGGCGAGCAAATACCTCCGCAGGGAGAGTCGTTGT
TTCGAGTTGA
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