mRNA_L-elsbetiae_contig1242.1977.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1242.1977.1 vs. uniprot
Match: A0A6H5JF94_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF94_9PHAE) HSP 1 Score: 1080 bits (2793), Expect = 0.000e+0 Identity = 813/1476 (55.08%), Postives = 951/1476 (64.43%), Query Frame = 1
Query: 1 VMASVGENEVARRIGREKARCVEARQQRRKDSITQARHVGSLVAFQAAWRGRCDRAKAAPALAARRRESEETRNMFEEERLAKCVVALEAEGREVEAKLQMKELIDMRCEETRTREAWLSLRHLEETARGEELVRMRAEERFTRALLDLELQDLRRLERVRRERXXTVRMRSEDHAXXXXXXLEKAQMAERTAMGVEDALSRIWKKLEKCQLAFSRAEGSRMAVEDRCSLAWNAEYRCLQEVRLRRAWARSTPIQRAMDPRGVAAAQALVCPPPVVPNRCDSLVAEAGAELKPSLPFDEGKPLILERARRRECCKSHLEIISSSALQVQSGQQAAA--KGLEKTLQGYGRNLDASDVPRGGVPLRKSQVSPREERGRPVERDGAECELTADMLSHLGPLRDLTALELCVEGLTSAPLLKACTSLKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPEKFAAGLMSSQDPSPDKTAACSALVEKAVACGGLQKLELYHNRISSVHPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLQEPPSPLCLPLLTELWLSGNHISSMRAWTSCPMQAEERP-SFKCFQQCAISNEVSTGVSGGSTKGELGASPARQGARFSEPYERNLEGRGRATKPGHASEKEGKHSALAAGGGGNDTGDACIWLPSLEVLHLQDNALESLGGRSAFVGCPLLRSFDASFNQLRTPDDIGDSLQACSELEEVRFHDNPASLRQDYADTVALSCPNVT-------------------------------------------------RMDGVQLDTQAHWRAGANTYGARADLVIPFLLSADGLSET-HGTA---------EQPGNSASKSKAPSTVGFEESCPWCGADT--PSNENTNVKASDSIGSAPVI-----GTVGAAGELDPSHGG-ELPRAARRGVGDDRSSRRRTCASCGVSFPDADLWSVPDSRASRFPISWEEVCSAGDRWRGEFCLGASFQDALETNHEEEGNVASAFRTACLRGRDERASMRRRHRREERDLAARADLNEAEPRSANLGTDSTSRLATMAPSRRRLEIELELGKQQAEERRDQAARQLCFHGGGVD---VGGADRINEVVH-------ESQQAADLRDTERGRV---HQSPGHRRSTAARVIQHHWYRRQKRAAP---SRPSLEDS--TRSPAKEQAVMKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGGARFELDRFLSPPPELTDGWWGDSSTTAAVPCCAKDVPRHPTPPSRARAIGTRLMDTARAVVSNTSRLSNASEDHAVETTTETELDSPRFGRGGEAAYDSMNGGATESPRTPQATDQGARDAEESF--SDEDPNVKATDSMRQESGERIGPTRAGGKGLARAWGLKDPRVARAMVKRAKRMRKFQNGEARREKM 4158
V+A VGE VARRI RE AR +EA+++RR D+I + + V FQA WRG C RA APALA+RRRE+EE + MF+EERLA+CVVALE E RE+E K Q EL MR E RTR +W RHLEETARGEELVRMRAEER TRAL+D+E+QDLRR + V+RE RM +ED A EKAQM ER M ED L+R K ++ +LA SRAEG RMA ED S WNAE+R +E LR AWARSTPIQRA+DPRG AAA+ALVC V A ++ +PS DE L++E+ARRRE CK HL IS++AL+V+ +QAA KGL +TL G+G A +G V ++ V+ +++R P ERDGAEC+LT+DMLSHLGPL DLTALELCVEGLTSA LL+ACTSLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELPE FA GLMS DP P +T C +VE+AVACGGLQKLELYHNR++S+HPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXX NLL+EPPSPLCLPLL ELWLSGN I SM +W S P + R + + AI +SG S + +L ASP Q + + R EG+GR ++ G K G G DA +WLPSLEVLH+QDNALE+LGGR + GCPLLRSFDASFNQLR PD+I SL+ACS LEEVR HDNPAS +YAD +ALSCP+V+ RMDGV LD Q HWRAGANTYG RADLV+PFLL SE HG A E GN ++SKA + CPWCG T + N V+ SD++ A VI G A LDP+ G LP+ + RSS C SCG P ADLWSV +SRA+R +SW+ VCSAG RWR FC G +D + +EE + +++FR ACLRGR ER MRRRHRREER++A AD NE PR+ G D TSRLA A S+RRLE+ELELG+ AEERR QAA QLC H G VD VG +DR V+ E Q T+ R+ S R + AAR IQ W+RRQ+R A S PS+ T PA EQAV KLQSAFRGFHVRRALQAALDSA+YVDDE+EGLLN+NGG RFELDRFLSPPPEL DGW G T V K++PRHPTPPSRA+A RL+DTARAVVSN + VE T+ T LDS G G A +T T QA + G D E+ + ++ A D + G GP R LAR WGL DPR ARA KRAKR+RKFQNGE +++K+
Sbjct: 11 VVAFVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGHCMRALVAPALASRRREAEEIQRMFQEERLAECVVALEEERREIELKRQCNELDAMRYAEKRTRTSWAFFRHLEETARGEELVRMRAEERLTRALVDVEIQDLRRAQIVQREEEELGRMCAEDLAMRELKLAEKAQMLERVVMQAEDILARGLKNFDEQELASSRAEGCRMAAEDSASATWNAEFRRQRETCLREAWARSTPIQRAVDPRGAAAARALVCTDGV----------RALSKPEPSELLDERMMLMIEQARRREYCKMHLYRISANALRVRKNRQAAVHTKGLGRTLLGHGNKSGARGGSQGEVSFEENLVASKKDRAGPAERDGAECKLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAVGLMSPTDPIPAQTETCPTVVERAVACGGLQKLELYHNRLASIHPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXXLSQNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPKETRLRSLPERWAKHRAILEGALLELSGDSAE-QLRASPGDQHLKHTPFLGRVSEGQGRESEYG-------KQETSLRGEHGRTCDDATVWLPSLEVLHMQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEIALSLEACSGLEEVRLHDNPASACPNYADAIALSCPHVSTSTGIDTPLCTCHRGVYVWDWRGHLYQVRCHCDALFVSYVAFQSLFQLMRMDGVHLDAQVHWRAGANTYGRRADLVLPFLLETGETSEAPHGAAAATPTTARSETTGNDVNESKALKEASVGDCCPWCGVCTLRAKHANNTVEESDAVNVARVIARGRDGKRDEASGLDPASGTTNLPQHIPDCIEGGRSSGPSICVSCGFELPSADLWSVSESRAARSFVSWQGVCSAGGRWRDGFCAGV--RDKIGIG-QEEMSESNSFRKACLRGRVEREKMRRRHRREERNVATGADFNEVGPRTVKGGGDITSRLAPRASSKRRLEVELELGEHHAEERRRQAATQLCSHSGRVDHGGVGASDRACVVLDCASIQPGEDQCNHSYLGTDAFRISPCQASSSRRHTRAARTIQRLWHRRQERTAQLVSSSPSVRQDVGTTWPANEQAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWLG----TNVVAQGNKNIPRHPTPPSRAKATSIRLVDTARAVVSNAPACPHPRGGDGVEATSRTRLDSYCTGGTGNATK------STFLSETAQAVETGRSDYRETAGRTSDEGGASARDKASEGGG---GPERRAKSDLARDWGLTDPRAARAFAKRAKRLRKFQNGEGQKKKV 1452
BLAST of mRNA_L-elsbetiae_contig1242.1977.1 vs. uniprot
Match: D7FVE2_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FVE2_ECTSI) HSP 1 Score: 993 bits (2567), Expect = 0.000e+0 Identity = 766/1408 (54.40%), Postives = 901/1408 (63.99%), Query Frame = 1
Query: 1 VMASVGENEVARRIGREKARCVEARQQRRKDSITQARHVGSLVAFQAAWRGRCDRAKAAPALAARRRESEETRNMFEEERLAKCVVALEAEGREVEAKLQMKELIDMRCEETRTREAWLSLRHLEETARGEELVRMRAEERFTRALLDLELQDLRRLERVRRERXXTVRMRSEDHAXXXXXXLEKAQMAERTAMGVEDALSRIWKKLEKCQLAFSRAEGSRMAVEDRCSLAWNAEYRCLQEVRLRRAWARSTPIQRAMDPRGVAAAQALVCPPPVVPNRCDSLVAEAGAELKPSLPFDEGKPLILERARRRECCKSHLEIISSSALQVQSGQQAAA--KGLEKTLQGYGRNLDASDVPRGGVPLRKSQVSPREERGRPVERDGAECELTADMLSHLGPLRDLTALELCVEGLTSAPLLKACTSLKSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELPEKFAAGLMSSQDPSPDKTAACSALVEKAVACGGLQKLELYHNRISSVHPRALQGLASLTHLDXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLQEPPSPLCLPLLTELWLSGNHISSMRAWTSCPMQA--EERPSFKCFQQCAISNEVSTGVSGGSTKGELGASPARQGARFSEPYERNLEGRGRATKPGHASEKEGKHSALAAGGGGNDTGDACIWLPSLEVLHLQDNALESLGGRSAFVGCPLLRSFDASFNQLRTPDDIGDSLQACSELEEVRFHDNPASLRQDYADTVALSCPNVTRMDGVQLDTQA-HWRAGANTYGARADLVIPFLLSADGLSETHGTA----------EQPGNSASKSKAPSTVGFEESCPWCGADT--PSNENTNVKASDSIGSAPVI--GTVGAAGE---LDPSHGG-ELPRAARRGVGDDRSSRRRTCASCGVSFPDADLWSVPDSRASRFPISWEEVCSAGDRWRGEFCLGASFQDALETNHEEEGNVASAFRTACLRGRDERASMRRRHRREERDLAARADLNEAEPRSANLGTDSTSRLATMAPSRRRLEIELELGKQQAEERRDQAARQLCFHGGGVDVGGADRINEVVHESQQAADLRDTERGRVHQSPGHRRSTAARVIQHHWYRRQKRAAPSRPSLEDSTRSPAKEQAVMKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGGARFELDRFLSPPPELTDGWWGDSSTTAAVPCCAKDVPRHPTPPSRARAIGTRLMDTARAVVSNTSRLSNASEDHAVETTTETELDSPRFGRGGEAAYDSMNGGATESPRTPQATDQGARDAEESFSDEDPNVKATDSMRQESGERIGPTRAGGKGLARAWGLKDPRVARAMVKRAKRMRKFQNGEARREK 4155
++ASVGE VARRI RE AR +EA+++RR D+I + + V FQA WRGRC RA APALA+R R++EETR MF+EERLA+ VVALEAE RE+E K Q EL MR E RTR +W LRHLEETARGEELVRMRAEERFTRAL+D+E+QDLRR + +RE + RM +ED A EKAQ+ ER M ED L+R K ++ +LA SRAEG RMA ED S WNAE+R +E LR AWARSTPIQRA DPRGVAAA+ALVC D + + E PS DE L++E+ARRRE CK HL+ IS+SAL+V+ +QAAA KGL +TL G+G A +G V + VSP+++R P ERDGAEC+LT+DMLSHLGPL DLTALELCVEGLTSA LL+ACTSLK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX ELPE FAAGLM DP P +T C +VE+AVACGGLQKLELYHNR++S++PRALQGLASLTHL XXXXXXXXXXXXXXXXXXXXXXXXXXXNLL+EPPSPLCLPLL ELWLSGN I SM +W S P + + P + + AI +SG S + +L ASP Q + + R EG+GR ++ G K G G DA +WLPSLEVLHLQDNALE+LGGR + GCPLLRSFDASFNQLR PD+I SL+ACS LEEVR HDNPAS +YAD + LSCP++T+MDGV LD Q HWRAGAN YG RADLV+PFLL SE A E GN S+SKA + CPWCG T + N V+ SD++ A VI G GA E LDP+ G LP+ V RSS TC SCG P ADLWSV +SRA+R +SW++VCSAG RWR FC A +D + +EE + +FR ACL+GR ER MRRRHRREER++A A +NE + T++L +PS R+ DVG T PA E+AV KLQSAFRGFHVRRALQAALDSA+YVDDE+EGLLN+NGG RFELDRFLSPPPEL DGW G T AV K++PRH TPPSRA+A R +DTARA VSNT R + VE T+ T LDS G G A ++ ++ +T ++ D+ AE + SDE + A D + G GP R LAR WGL DPR ARA KRAKR+RKFQNGE +++K
Sbjct: 1 MVASVGEAAVARRIEREMARSLEAKRKRRDDNIREDKRARCAVVFQAIWRGRCMRALVAPALASRPRQAEETRRMFQEERLAERVVALEAERRELELKHQYTELDAMRYAEKRTRASWAFLRHLEETARGEELVRMRAEERFTRALMDVEIQDLRRAQIAQREEEESSRMHAEDLAMRELKLAEKAQILERVVMQAEDMLARGLKNFKEQELASSRAEGYRMAAEDSASATWNAEFRRQREACLREAWARSTPIQRAADPRGVAAARALVC--------ADGVRTPSKPE--PSELLDERTILMMEQARRREYCKRHLDRISASALRVRKDRQAAAHTKGLGRTLSGHGNKSGARGGSQGEVSFEEDLVSPKKDRAGPAERDGAECQLTSDMLSHLGPLEDLTALELCVEGLTSASLLQACTSLKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRELPEGFAAGLMQPTDPIPAQTETCPTVVERAVACGGLQKLELYHNRLASINPRALQGLASLTHLXXXXXXXXXXXXXXXXXXXXXXXXXXXXNLLREPPSPLCLPLLNELWLSGNQIRSMGSWASSPTETRLDSLPE-RWTKHRAILEGALLELSGDSPQ-QLRASPGDQHLKHTPFLGRVSEGQGRESEYG-------KQETSTRGEHGRTYDDATVWLPSLEVLHLQDNALETLGGRFSLAGCPLLRSFDASFNQLRAPDEISLSLEACSGLEEVRLHDNPASACPNYADAITLSCPHLTQMDGVHLDAQVQHWRAGANAYGRRADLVLPFLLETGETSEARRGAAAATPTTARNETTGNDVSESKASKEASVGDYCPWCGVCTLRAKHANDTVEESDAVNVAEVIVRGRDGARDEASGLDPASGTTNLPQHIPGCVEGGRSSGPSTCVSCGFELPSADLWSVSESRAARSFVSWQDVCSAGGRWRDGFC--ADVRDTIGMG-QEEMSERDSFRKACLQGRVEREKMRRRHRREERNVATGAGVNE----------ERTAQLVASSPSVRQ------------------------------DVG--------------------------------------------------------------TTWPANEKAVTKLQSAFRGFHVRRALQAALDSAKYVDDELEGLLNINGGDRFELDRFLSPPPELGDGWLG----TTAVAQGNKNIPRHLTPPSRAKATSIRAIDTARAAVSNTPRRPHPRGGDGVEATSRTRLDSYCTGGTGHATKSTILSETVQAVQTGRSDDR--ETAERTTSDEG-SASARDKASEGGG---GPERRAKSDLARDWGLTDPRAARAFAKRAKRLRKFQNGEGQKKK 1274
BLAST of mRNA_L-elsbetiae_contig1242.1977.1 vs. uniprot
Match: A0A835Z7U6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7U6_9STRA) HSP 1 Score: 72.0 bits (175), Expect = 1.140e-8 Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1
Query: 3355 STAARVIQHHWYRRQKRAAPSRPSLEDSTRSPAKEQAVMKLQSAFRGFHVRRALQAALDSARYVDDEVEGLLNVNGGARFELDRFLSPPPELTDGW 3642
S+AA +Q WYR +RA +R + + ++ +A +KLQ AFRGFHVRRALQAAL+SARYVD E+EG++ + ++D FL P +L D W
Sbjct: 1538 SSAASCVQA-WYRG-RRAERARVAAAAAAQTG---EAAVKLQRAFRGFHVRRALQAALESARYVDHELEGMVGL------DVDAFLGTPMQLDDDW 1622 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1242.1977.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1242.1977.1 >prot_L-elsbetiae_contig1242.1977.1 ID=prot_L-elsbetiae_contig1242.1977.1|Name=mRNA_L-elsbetiae_contig1242.1977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=1547bp MASVGENEVARRIGREKARCVEARQQRRKDSITQARHVGSLVAFQAAWRGback to top mRNA from alignment at L-elsbetiae_contig1242:15456..22773- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1242.1977.1 ID=mRNA_L-elsbetiae_contig1242.1977.1|Name=mRNA_L-elsbetiae_contig1242.1977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7318bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:15456..22773- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1242:15456..22773- >mRNA_L-elsbetiae_contig1242.1977.1 ID=mRNA_L-elsbetiae_contig1242.1977.1|Name=mRNA_L-elsbetiae_contig1242.1977.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=9282bp|location=Sequence derived from alignment at L-elsbetiae_contig1242:15456..22773- (Laminarionema elsbetiae ELsaHSoW15)back to top |