mRNA_L-elsbetiae_contig12388.1950.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12388.1950.1
Unique NamemRNA_L-elsbetiae_contig12388.1950.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12388.1950.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12388contigL-elsbetiae_contig12388:922..4348 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size255
Cds size252
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815433.556336-CDS-L-elsbetiae_contig12388:921..11341622815433.556336-CDS-L-elsbetiae_contig12388:921..1134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12388 922..1134 +
1691682895.6722267-CDS-L-elsbetiae_contig12388:921..11341691682895.6722267-CDS-L-elsbetiae_contig12388:921..1134Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12388 922..1134 +
1622815433.570068-CDS-L-elsbetiae_contig12388:4308..43471622815433.570068-CDS-L-elsbetiae_contig12388:4308..4347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12388 4309..4347 +
1691682895.6811419-CDS-L-elsbetiae_contig12388:4308..43471691682895.6811419-CDS-L-elsbetiae_contig12388:4308..4347Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12388 4309..4347 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12388.1950.1prot_L-elsbetiae_contig12388.1950.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12388 922..4347 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12388.1950.1

>prot_L-elsbetiae_contig12388.1950.1 ID=prot_L-elsbetiae_contig12388.1950.1|Name=mRNA_L-elsbetiae_contig12388.1950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=84bp
FVVRDIHPRGSHGCEMDARCSPSQSDQRTSYARLHRVTCARGLCYTCARA
LRPDAFVGQKTQRQCCSRVLPMQEKCIQRPSVGQ
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mRNA from alignment at L-elsbetiae_contig12388:922..4348+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12388.1950.1 ID=mRNA_L-elsbetiae_contig12388.1950.1|Name=mRNA_L-elsbetiae_contig12388.1950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3427bp|location=Sequence derived from alignment at L-elsbetiae_contig12388:922..4348+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTGGTGCGAGACATCCACCCACGTGGTTCACATGGATGCGAGATGGA
TGCAAGATGCTCACCGTCGCAGTCCGACCAGCGAACGTCGTATGCACGGT
TACATCGCGTGACGTGCGCGCGGGGCCTGTGCTACACTTGCGCTAGGGCC
CTCCGCCCCGATGCCTTCGTTGGGCAGAAGACGCAGCGGCAGTGTTGCAG
CCGCGTCCTACCAGTGAGTAAATTTCCATTAGCCAGCAATCGGGTCTACA
CAGACGCCAGATGTTGCGGTTTGGTTTCAAGCGGAAGACCTTCAGCAACT
AGACTACTTCGAAGTTGTGTTGCACCTTACAGCGGATCTATCTATGTAGC
GGTCTAGACTCCTCAAGTCTACTGCATGTACATACACCGTGTAAGGATGC
GAGTCTTGGCACACTACTGTGTGCGGTCGTCTTTTTAAATATTTGCGTTC
TCAGTTTTTTTTTTCGCGCACAGGGGTGCCAAGACGCCGATCCGTGCAAA
GACGCCGATCCCTGTGCGGAAGTTGAATGACTTTTGGTTCTAAACTTTCA
GCGCAGCTGCGATGACGTCGATCCGTGCGATTCTAAACAAAGCAAAGCGG
TGGTATGGGGTGCTTTGAACGCACACCCCTGTGCCAAGAGCCCTTTGCGT
ACTTTAGGATTGCCAGCAGAGGTCTGGCGCGGAGCAGTTGGTATGTAGAA
ACTTGGCGCTAGAATGCTGTGTTTGCAGGGGGTTGTGTCCGGAAGAAGAG
GGATTGCCTGGTGCCCGGGCGAAGAATGACGTAGTAGTACCGTAAGTGAC
ATAAGATAAGACACCCCCTGGACCGATTTTCAAAGCTCAAGTACTCCACA
GGAAGCAGAGCGTCAGTCCTGAAAAGGGCGGCATGGGAAAGATCTCGTCG
AGAGCTGTCCAAAAATGTGGCGTTTGTGGTTAGAATCGTATTCGTTGCCG
AGTCACCAAGCTTTCAATATCGGTCCAGGGGGTGTCTTATCTTATGTCAC
CTACGGTAGCGGCCCACGGGGGTGTTCTATTCCGCCTGCCGGCCTTTCTT
AGGCCAGGTATAGGCAGTACCGTATATCCAGATATCATACCGGGACTGAT
ATTTTGTACAATAGAAGTTGGTCGTGATCGTTTGGTCTCGTGCTTTTTTG
TTCGTTTGACACGCGACCTTCGTCAAGTGGGCGAAATAATAACAATGAGC
AGAACACATTTAAAAGGACTTTTGTATTCGGAGCCACAAAGCCGGGTACC
GACTCCTCGTAACTGCATTAAGCTGTGTGCGATGCAACAAGTGTGTGTGT
GTTTGTGTGCTGTGCGCTGGCGGTGTGAGACAAAATCCCCAGTTGGCACC
CCCCCGTCACGCTCTCGCGAACCCCCTCTCCTTTTTTTGGTCCGCTGGCG
ATTCGCGTAACCAACACACAGTAGCGTGCTCTCGGTGCAGGGTAAAGCCA
TAAATACCTCTAGAAACCTGTCCCGACACCGACAGCAGTAACACGTACAT
AGGATAAGACTGCTGAATGGTAGCGATGATGGATGGGTGCAGCAAAACCG
TTCATATTTTTTTTGCTGGAGAGCGGTCACCGAAACAGCCCGCAGGAAGA
GAGGGTCGTTATTCAACGCATGTTGCACCTGACAGGGCGAAGAGGTGGCG
GTGTGAAATGAGACAAAGAGCACTCGATCGGTCTTGCATGGAGCTTTCGC
GGAAGCCATCGACTGTTTTCGTCCGTGCTGAGCTCGTCGCACAAGTCGAG
AACGCCAGGCCCCGCCACAGCAGATCCAAACACGACTTTGTTCACTTCAC
CGCGCGAACTCATCCCGGTGTACGACACAGGAAGTTAGTACCAACAGCTC
GGTCCAGCTTAGAGCGCTCGTTCAAGCCCTTGGCGGTCTCAATACGTGCC
GAAACGACTACACGCGGTCTAAAAAACGCAGACACACACACACAGACACC
ATCAACGTCAATTTTTTAGAAACCCACCCCTCGGCACAGATTGTTTTCAC
GACATCCGATCCGCTATACCGTATTCTAGAAGCCTATTTCGGTCAGTCAG
CCATTTTCGTTGCCAGGCTCCTCATTATAATTTTCCGCCATAAAACGGAC
AGAAAAATGCCACTGTTCACCGACCAACCGGAAGCTCAGGATGTGCAAGC
CCGACCAGTATTCCGCATTTCGATTTGCGCAAAATTCCGGACACCACTCG
AAGTATCGCCCAATCTCACCGAAGGTGGTCGGGGTCTCCGCACCCCTGTG
CGGAGACGCCTATGCCTGCTGTGCGATAATCGAAATAATGAACTATTTAG
AGCTCGTTTTTTTTTTCCGCACCCCTGTGCCAAGATCCCGACACCCGTGC
GGAGACGCCGATCCGTGCCAAGATCCGCATCTTTACGGTAGTATGCAGGA
TACTTTATTTCTGTATTTTTCTTTATTTCCCTCGCTACAAGCAGTCGACT
GCATCAGACCTCAAAGAGTGCTCGCGCATGCAGGTTGAACTGCTGTCCGG
TAGTAGTGGCACAAGTTGTTTTTGTTGTTGTTTTTCTTCTTCACATTTAT
TTCCAGTGCTCGATGGGCTGGCTCCCTGTCACGGTGACATCTTGCCAGAG
TACTATACGGTGGTTGGTCACACAGAAGGGTTGGTTCCTTTCCCCGATTG
TTATTTTGTACTACAGCCTCCACCACGAGTCCTCCCCAAGCGCCTTCTGC
TGCAAACATGCATACATATGTCGGCTAAGGCTAACCCAAATCTGCTACCC
CCCACCCTCTTCTCTCATGGCTTTTGGTTCTCGACCAACGCCAGCAGTCC
CACCGCGTGACGCTCCACTCCGCCAACCGTATGTGGCACAAGATACCACC
CCCCCCATGGACACATTTTCAAAGCTCGATTCTTCCCCAGCAAGAAGAGT
GCCAGTCAGTGCCGAAAGGGGTGGCGGCGTTGGAAATATCCAAGTAGTCG
AATGATGTCCGACAAGGTGTGGTTTGGTGCTGCCGGCACCCTCTCCGTTA
TGGAGGAGCCAGGGGGGGGGGGGTATCTTGTGTCATCTACGGTACCCCTG
CCTCGTCGCCGTTCGCGCACATATTTGTTCTGTTCCTGACCCATATTTTG
TTGTTGTTCTTTGCGGACCCTTCGGGTCAATTTGATTTATTTTTCATTTT
TCAGTAGTCTAGACTGTGTGTGTGTCCTTCCCAGACTACATCCTTTTCAG
GGTAAGTTATTCGAGTCGACCGCGTCGCTGTTGGATTGGTAACTAAGGGC
TAATGGAGGTGTTTTGTAATGGATAAAAGAGAGATCGGAACTGTTTTTAG
TTTTTAATGCGAAGACAGCACACACACACACACCCAGCCCCTCTCCTCGC
CAACCCTTTCCCCTCCTGCACATTGTACCGGCCTCAGATGCAGGAGAAGT
GCATCCAGAGGCCTAGTGTCGGGCAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12388:922..4348+

>mRNA_L-elsbetiae_contig12388.1950.1 ID=mRNA_L-elsbetiae_contig12388.1950.1|Name=mRNA_L-elsbetiae_contig12388.1950.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=504bp|location=Sequence derived from alignment at L-elsbetiae_contig12388:922..4348+ (Laminarionema elsbetiae ELsaHSoW15)
TTCGTGGTGCGAGACATCCACCCACGTGGTTCACATGGATGCGAGATGGA
TGCAAGATGCTCACCGTCGCAGTCCGACCAGCGAACGTCGTATGCACGGT
TACATCGCGTGACGTGCGCGCGGGGCCTGTGCTACACTTGCGCTAGGGCC
CTCCGCCCCGATGCCTTCGTTGGGCAGAAGACGCAGCGGCAGTGTTGCAG
CCGCGTCCTACCATTCGTGGTGCGAGACATCCACCCACGTGGTTCACATG
GATGCGAGATGGATGCAAGATGCTCACCGTCGCAGTCCGACCAGCGAACG
TCGTATGCACGGTTACATCGCGTGACGTGCGCGCGGGGCCTGTGCTACAC
TTGCGCTAGGGCCCTCCGCCCCGATGCCTTCGTTGGGCAGAAGACGCAGC
GGCAGTGTTGCAGCCGCGTCCTACCAATGCAGGAGAAGTGCATCCAGAGG
CCTAGTGTCGGGCAGATGCAGGAGAAGTGCATCCAGAGGCCTAGTGTCGG
GCAG
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