mRNA_L-elsbetiae_contig1238.1948.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1238.1948.1
Unique NamemRNA_L-elsbetiae_contig1238.1948.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1238.1948.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1238contigL-elsbetiae_contig1238:25952..26828 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size750
Cds size375
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1238.1948.1prot_L-elsbetiae_contig1238.1948.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1238 26454..26828 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815433.060095-UTR-L-elsbetiae_contig1238:25951..260001622815433.060095-UTR-L-elsbetiae_contig1238:25951..26000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1238 25952..26000 +
1691682895.486107-UTR-L-elsbetiae_contig1238:25951..260001691682895.486107-UTR-L-elsbetiae_contig1238:25951..26000Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1238 25952..26000 +
1622815433.0708997-UTR-L-elsbetiae_contig1238:26127..264531622815433.0708997-UTR-L-elsbetiae_contig1238:26127..26453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1238 26128..26453 +
1691682895.4970326-UTR-L-elsbetiae_contig1238:26127..264531691682895.4970326-UTR-L-elsbetiae_contig1238:26127..26453Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1238 26128..26453 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815433.0809352-CDS-L-elsbetiae_contig1238:26453..268281622815433.0809352-CDS-L-elsbetiae_contig1238:26453..26828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1238 26454..26828 +
1691682895.5083215-CDS-L-elsbetiae_contig1238:26453..268281691682895.5083215-CDS-L-elsbetiae_contig1238:26453..26828Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1238 26454..26828 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1238.1948.1

>prot_L-elsbetiae_contig1238.1948.1 ID=prot_L-elsbetiae_contig1238.1948.1|Name=mRNA_L-elsbetiae_contig1238.1948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=125bp
MRRIALPEPPPPEPAGAATTTATASSPAAAARAPSTAAAGSGSRVSGGNG
SSRRRGGGSTGRSLTAGGRLLDGMAPEAGTASSSTDNSPRRSSIGGRGGS
SSSGNGNGKGKGKAKAKAKPRSAAS
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mRNA from alignment at L-elsbetiae_contig1238:25952..26828+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1238.1948.1 ID=mRNA_L-elsbetiae_contig1238.1948.1|Name=mRNA_L-elsbetiae_contig1238.1948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=877bp|location=Sequence derived from alignment at L-elsbetiae_contig1238:25952..26828+ (Laminarionema elsbetiae ELsaHSoW15)
ACGAACGGCTAGCGACGACTCTCTGTGAAAGACCTCGGCAGATCTCGTGG
TAAGTCAGTCACTGTGTGCTTCACCGACAGTTGCTGTACCTCCTGCAGTC
GATCGCGAAAGAACAAACCAGCATTTTTCGATTGTGTTCCTCTCTGTTCT
CACTGCTTGTGCGCCAACCTGCTCAGGATCCCTCTCACGGTCTCCCCCTT
TACCTCGCACCGCGCGCGACGGCGGGGAGCGCATCTGCTCTCCACGTCGT
CCGTCGGGCGGCGGGCAAGGTCCTACCACGAGTTCGCACCGCACTCCTCG
TTCCGGTAGCGGCGGCTCCCGAAGCGGCTCAACCGGCGTCGACACAACTC
CCGCTTTCCAACTGCCGTCCAAGCGCAAGCGCGTGCCGACACCCCCCGAA
GCTGCAGCAGCGGCAGCGGCGGGCGACGACCCAGTCACTCAAGCGGCGGG
AGACAGGGGTGGGAGGGCAAGCGGGGGACAACCGGAGGTTCCTCCCGCCC
GCATGCGAAGAATCGCGCTGCCGGAGCCGCCGCCGCCGGAGCCCGCTGGG
GCTGCTACTACGACAGCGACTGCGAGTTCGCCGGCAGCGGCGGCAAGGGC
ACCATCAACGGCTGCTGCAGGTTCCGGTTCGCGCGTGAGCGGTGGGAACG
GCAGCAGCCGGAGGCGTGGAGGAGGGTCGACGGGCCGAAGCTTGACAGCA
GGAGGGAGGTTGTTGGATGGGATGGCCCCGGAGGCTGGCACAGCTAGCAG
CAGCACCGATAACTCTCCAAGGCGGTCATCGATCGGCGGGAGGGGTGGCA
GCAGTAGCAGCGGCAACGGCAATGGCAAGGGGAAGGGGAAGGCCAAGGCC
AAGGCTAAGCCGAGGTCGGCCGCTAGT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1238:25952..26828+

>mRNA_L-elsbetiae_contig1238.1948.1 ID=mRNA_L-elsbetiae_contig1238.1948.1|Name=mRNA_L-elsbetiae_contig1238.1948.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=750bp|location=Sequence derived from alignment at L-elsbetiae_contig1238:25952..26828+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAAGAATCGCGCTGCCGGAGCCGCCGCCGCCGGAGCCCGCTGGGGC
TGCTACTACGACAGCGACTGCGAGTTCGCCGGCAGCGGCGGCAAGGGCAC
CATCAACGGCTGCTGCAGGTTCCGGTTCGCGCGTGAGCGGTGGGAACGGC
AGCAGCCGGAGGCGTGGAGGAGGGTCGACGGGCCGAAGCTTGACAGCAGG
AGGGAGGTTGTTGGATGGGATGGCCCCGGAGGCTGGCACAGCTAGCAGCA
GCACCGATAACTCTCCAAGGCGGTCATCGATCGGCGGGAGGGGTGGCAGC
AGTAGCAGCGGCAACGGCAATGGCAAGGGGAAGGGGAAGGCCAAGGCCAA
GGCTAAGCCGAGGTCGGCCGCTAGTATGCGAAGAATCGCGCTGCCGGAGC
CGCCGCCGCCGGAGCCCGCTGGGGCTGCTACTACGACAGCGACTGCGAGT
TCGCCGGCAGCGGCGGCAAGGGCACCATCAACGGCTGCTGCAGGTTCCGG
TTCGCGCGTGAGCGGTGGGAACGGCAGCAGCCGGAGGCGTGGAGGAGGGT
CGACGGGCCGAAGCTTGACAGCAGGAGGGAGGTTGTTGGATGGGATGGCC
CCGGAGGCTGGCACAGCTAGCAGCAGCACCGATAACTCTCCAAGGCGGTC
ATCGATCGGCGGGAGGGGTGGCAGCAGTAGCAGCGGCAACGGCAATGGCA
AGGGGAAGGGGAAGGCCAAGGCCAAGGCTAAGCCGAGGTCGGCCGCTAGT
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