mRNA_L-elsbetiae_contig1237.1943.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1237.1943.1
Unique NamemRNA_L-elsbetiae_contig1237.1943.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A7S1GXN0_HEMAN (Hypothetical protein (Fragment) n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXN0_HEMAN)

HSP 1 Score: 232 bits (591), Expect = 8.480e-70
Identity = 124/285 (43.51%), Postives = 169/285 (59.30%), Query Frame = 2 
Query:  176 FLGGFFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPER-------AHTLKDQETRRRWWLPLMSLLRTGRDKNGRHPL----------HGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTE-----VGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTYEGKFLGKRYCSHPRRS 964
            F  GF F+  GY+ +S ++Q++FY R+ +    WK++PER       A+++         W+PL+S +    D +   P           H + ++ N+ MA   AGTV H    G+T++ +  +     +G+  W  A     + A  +V EYYWHR MH R  Y RLHK HHFYKSPEPFDDL IHPLEA GYY  LYSPP  + +    F  YMA+ G+CGVLDHSGV++ VPGLY   DHD HHS+FEVNYAFP P MD++HGT+ G  +G R+   PR++
Sbjct:   31 FAAGFSFILCGYLSMSYSLQYWFYARQQARIKDWKVQPERQGGSGPVAYSI---------WIPLISPVPVNTDTHKSSPDSPPSKVRARDHWVLSSINLAMASSVAGTVAHLCCRGRTRMVFTLQDAGGVIGLLGWTGA-----AFALHNVAEYYWHRLMHHRFFYSRLHKLHHFYKSPEPFDDLYIHPLEAAGYYAILYSPPFALPIHALGFGFYMAIMGLCGVLDHSGVRVRVPGLYAAEDHDLHHSKFEVNYAFPHPLMDILHGTFSGTCMGFRFPYPPRKT 301
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: C1FEX9_MICCC (C-4 sterol methyl oxidase n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1FEX9_MICCC)

HSP 1 Score: 223 bits (567), Expect = 1.300e-66
Identity = 124/271 (45.76%), Postives = 163/271 (60.15%), Query Frame = 2 
Query:  179 LGGFFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTL---------KDQETRRR-----WWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFW---DTEVGVSWWRTA------VGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLI-AMPLSSFLVYMAVCGVCGVLDHSGVKLSVP-GLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTY 916
            +G F F   GYV LS+ +++ +Y RR     +WK +P + H            D + R R     W LP + L+R    K+GRHP H  +AT N+V++ +FAG      +AG  K+F     T V  S +  A      VG + ++ WQSVLEYYWHR MHL  VY  LHKFHH YKSP+P+DDL IHP E+FGY L LYSP   + ++P+ +FL+YM + G CGVLDH GVK+  P G YDT  HD HH  F+ N+AFPFP MD +HGT+
Sbjct:    6 VGVFAFQLCGYVALSTWVEWRWYHRRRGKEREWKTQPGKMHGKIHRRGAARDDDDDGRGRRGYYAWGLPALDLVRASPSKDGRHPSHACYATCNLVVSSLFAGATCEAYLAGDGKLFGLFRSTLVNASAYSVASAYSVLVGAVLAVTWQSVLEYYWHRAMHLPRVYRLLHKFHHHYKSPQPWDDLFIHPAESFGYCLILYSPAFCVPSLPVQAFLLYMTIMGACGVLDHCGVKMRWPFGAYDTQFHDVHHRSFDANFAFPFPTMDRLHGTH 276
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: L1JX35_GUITC (Sterol desaturase n=2 Tax=Guillardia theta TaxID=55529 RepID=L1JX35_GUITC)

HSP 1 Score: 221 bits (562), Expect = 4.720e-66
Identity = 112/257 (43.58%), Postives = 151/257 (58.75%), Query Frame = 2 
Query:  173 AFLGGFFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQETRRRWWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTYEGKFLGKRY 943
            AFL G   +  GY  LS A+Q  +Y RR  SP +WKI+P+R   L+        W P +   R    + G+   H      N++ A   AG V   IV G T++ +D +              ++ WQSVLEYYWHR MHL   Y   HK HH YKSP+PFDD+ IHP+EA GYY  LYSPP +  + +  F++YMA+ GVCG+LDHSG+K    G+Y+T DHD+HH  F+ N+AFPF +MD++HGT+ G  +G  Y
Sbjct:    5 AFLAGAAAIVVGYHGLSCALQAVYYLRRRCSPQEWKIQPQRFVRLQSPAC----WSPFLG--RWFGRREGKEEYHDFVCAMNVITAGCSAGFVVRSIVRGSTRLLFDWKAAGRLPGVVGTFCLAVGWQSVLEYYWHRLMHLPFFYKHFHKMHHSYKSPQPFDDMYIHPVEAVGYYCILYSPPFVFPLHVYGFVLYMAIMGVCGILDHSGIKWGFLGIYNTEDHDKHHEHFDCNFAFPFVWMDILHGTFAGDHMGIHY 255
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A482SNF4_9ARCH (Fatty acid hydroxylase family protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SNF4_9ARCH)

HSP 1 Score: 219 bits (557), Expect = 2.810e-65
Identity = 109/247 (44.13%), Postives = 153/247 (61.94%), Query Frame = 2 
Query:  206 GYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQETRRRWWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAV-GLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTYEGKFLGKRY 943
            GY+  SS +Q++FY RR      WKI+    +T+        W     S       K  R PLH L    N+ +A  FA   T C V    ++ ++ +  V+   T    +L +  ++S+ EYYWHR MHL+  Y   HK HH YK+PEPFDD+ IHP+EAFGYY  LY+PP L  M   SF+ YM + G+ GV+DHSG+K S+P +Y+T DHD HH++FEVNY+FPFP++D++HGT+EG+FLG++Y
Sbjct:   17 GYIAHSSFLQYWFYVRRKDCVSDWKIQSNNTNTVGTL-----WGWSFFS------SKPHRAPLHSLITCVNLFIASCFALMATECSVRRVNRMTYE-DFDVNLLPTIFCQVLLACTYESLAEYYWHRLMHLKFFYIAFHKMHHQYKAPEPFDDMYIHPVEAFGYYCILYAPPFLFTMHYVSFIAYMVIMGIFGVMDHSGIKFSIPAIYNTVDHDSHHAKFEVNYSFPFPYLDILHGTFEGEFLGRQY 251
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A7S3D0N0_9EUKA (Hypothetical protein n=4 Tax=Palpitomonas bilix TaxID=652834 RepID=A0A7S3D0N0_9EUKA)

HSP 1 Score: 203 bits (516), Expect = 3.650e-59
Identity = 98/242 (40.50%), Postives = 145/242 (59.92%), Query Frame = 2 
Query:  209 YVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQETRRRWWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTYEGKFLG 934
            Y++ ++ +Q+++Y  R      WK +  ++  +   +   RWWLP+ S      +K  R P + +FAT N+++    A T    +  G + + ++  V   W  + V     +    +LEYYWHR MHLR  Y   HK+HH++KSPEPFDD+ IHPLEA GYY+ +YS P LI M  ++F  YM V GV GV+DHSG+K   P  Y + DHD HH ++EVNY+FPF +MD++HGT+ G + G
Sbjct:   20 YIIFNTLLQYYYYKGRVGDVKVWKTQAGKSSAV--GKAAARWWLPIFS------NKEKRPPHYAIFATMNVLLQVACATTAIELVCRGYSSMRFE-PVENEWKMSIVSFFLGIVLHMMLEYYWHRLMHLRWFYCTFHKYHHYFKSPEPFDDMYIHPLEALGYYIIMYSTPFLIPMHWTAFAGYMIVVGVAGVMDHSGIKFHFPLFYASEDHDLHHEKYEVNYSFPFMWMDILHGTFRGTYAG 252
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A061RXV7_9CHLO (C-4 sterol methyl oxidase n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RXV7_9CHLO)

HSP 1 Score: 203 bits (516), Expect = 3.880e-59
Identity = 117/254 (46.06%), Postives = 145/254 (57.09%), Query Frame = 2 
Query:  173 AFLGGFFFMASGYVLLSSAMQFFFYCR-RASSPGKWKIRPERAHTLKDQETRRRWWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFW---DTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPL--LIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTY 916
            AFLG       GYVL+S+ +Q  +  R R  + G    R + A           WWLP ++L     D + RHPLHGL+ T N++ A  F   VT   + G   +     DT + + W    +  L++   QSVL YYWHR MH RP Y  LHK HHFYK+P PFDDL IHP+EAFGYY  LY  P   L  MPL  + +Y+ + GV GVLDHSG+ LSVP  Y  +DHD HH  F VNYAFPF  MD+ HGTY
Sbjct:   10 AFLG----QLGGYVLVSTFLQSLYLRRYRVQAXGNMDSRTDEAAKGHSGALGTYWWLPAVNLFGXKPDYS-RHPLHGLYCTINLLTASSFLAFVTEAHIRGWNNIKLPEPDTLIYLEW----LPFLRATLAQSVLVYYWHRLMHWRPCYKALHKLHHFYKAPRPFDDLFIHPVEAFGYYTLLYLFPAHCLGRMPLGDYALYLTIHGVFGVLDHSGIYLSVPPFYHVSDHDAHHRHFNVNYAFPFVLMDIFHGTY 254
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A830HM61_9CHLO (Fatty acid hydroxylase domain-containing protein n=1 Tax=Pycnococcus provasolii TaxID=41880 RepID=A0A830HM61_9CHLO)

HSP 1 Score: 197 bits (501), Expect = 6.590e-57
Identity = 114/251 (45.42%), Postives = 145/251 (57.77%), Query Frame = 2 
Query:  188 FFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQETRRRWWLPLMSLLRTGRD--------KNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSP---PLLIAMPLSSFLVYMAVCGVCGVLDHSGV-KLSVPG-LYDTADHDRHHSRFEVNYAFPFPFMDV 901
            FF   SGYVL+SS +Q+ +Y +  S     ++  +R+           WW PL+SLL   RD           +HP H L+AT N   +  FAGT+ +   A  T     T     +         ++AWQSV+EYYWHR MH   +Y   HK HH Y+ P PFDDL IHP+EA GYYL LYSP   P+L  +PL+SF+ YMAV G+CGV DHSGV  L +PG +Y+T DH  HHS F VNYAFPFP MD+
Sbjct:   31 FFLQLSGYVLISSWLQYRYYFQDLSGV---RVHHKRSFVS--------WW-PLLSLLFPSRDLPHISLRPHGSKHPRHNLYATINSFTSSAFAGTIAYAFHANLTWCRITTTARDDYTDYFKAFATAVAWQSVIEYYWHRLMHWGWIYKAFHKLHHTYQHPVPFDDLFIHPVEAMGYYLILYSPAFLPILPKIPLASFVTYMAVMGLCGVFDHSGVASLRIPGGIYETTDHANHHSPFVVNYAFPFPLMDI 269
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: W7TYR2_9STRA (C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TYR2_9STRA)

HSP 1 Score: 197 bits (501), Expect = 1.640e-56
Identity = 118/282 (41.84%), Postives = 149/282 (52.84%), Query Frame = 2 
Query:  206 GYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQET----------RRRWWLPLMSLLRT---------------------GRDKNGRHPLHGLFATFNIVMACVFA-----GTVT---------HCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTY 916
            GY+ L++A+   FY  R S    WKI+      +  +ET          R+R    +  L  T                      R   GR P H LFAT N+++A +FA     GTV          H  V G  +V W   +G SW   A     SL WQS  EYYWHR MH  PVY R HK HHFYK+P PFDD+ I PLEA GYY  LYSP L++ M + SF VY+ + G+CG+LDHSG+ + +P +YDT  HD HHS    N+ FPFPF+DV+HGTY
Sbjct:   21 GYLTLNAALYIVFYQCRCSETESWKIQTHNTRHINKRETGTIYGASSEGRKRQVTSISKLTSTVNNNTLISYALANLADVPWPWRRGVKGRAPQHALFATCNLMIASLFALLTAEGTVRGIGSQLKTGHPHVLGTREVIWWL-LGESWLVVA-----SLGWQSAWEYYWHRLMHYGPVYRRFHKHHHFYKAPAPFDDMYIAPLEALGYYFILYSPALVLPMHVLSFAVYLTLLGLCGILDHSGIDVRLPRVYDTRFHDIHHSYTNANFGFPFPFLDVLHGTY 296
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BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: A0A7S0CTL5_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0CTL5_MICPS)

HSP 1 Score: 195 bits (495), Expect = 7.980e-56
Identity = 115/258 (44.57%), Postives = 148/258 (57.36%), Query Frame = 2 
Query:  179 LGGFFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQETRRR---WWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAVCGVCGVLDHSGV--KLSVPGL--------YDTADHDRHHSRFEVNYAFPFPFMDVVHGT 913
            +G FF    GYV LS+A+++ +Y RR S   +W+ +P       +  T      W LP   L R G  + GRH LH  +AT N+V++ +FAG      + G T +F   +V     +  VGL + +  QSVLEYYWHR MH    Y RLHK HH YKSP  +DDL I P EAFGYY  L+   +++  P SSFL+YMAV G CGVLDH GV  +L+   L        Y T  HD HH++F  NYAFPF  MDV+HGT
Sbjct:   18 VGTFFAQLLGYVALSTALEYGWYHRRFSERRRWRTQPSNDARSLEASTATGGYDWGLPARDLGR-GVPRRGRHELHARYATVNLVVSALFAGATCEAYLRGWTNLFERGDVI----QVGVGLAKLVVAQSVLEYYWHRVMHFPFFYRRLHKMHHHYKSPAVWDDLFIDPREAFGYYCILFGTGVVVPAPASSFLLYMAVMGTCGVLDHCGVSFELNTSALLPWTELEVYGTTFHDLHHAKFNANYAFPFAAMDVLHGT 270
[Close]
BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Match: C1MKM3_MICPC (Predicted protein n=1 Tax=Micromonas pusilla (strain CCMP1545) TaxID=564608 RepID=C1MKM3_MICPC)

HSP 1 Score: 189 bits (481), Expect = 4.150e-53
Identity = 110/289 (38.06%), Postives = 146/289 (50.52%), Query Frame = 2 
Query:  206 GYVLLSSAMQFFFYCRRASSPGKWKIRPERA-----------HTLKDQETRRRWWLPLMSLLRTGRDK-----NGRHPLHGLFATFNIVMACVFAGTVTHCIVAGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRLHKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIA-MPLSSFLVYMAVCGVCGVLDHSGVKLSVP-----------------------------------GLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTY 916
            GYV LSS ++F +Y RR      WK +P              H       +  W LPL+ L  +          GRHP H  FA+ N++++ +FAG        G + +   T   ++   + V L++ + WQSVLEYYWHR MH   +Y RLHK+HH YKSP PFDDL IHPLEA GY   LYS   +   +P++SFL YMA+ GVCG++DH GV+  V                                     +Y +  HD HH RF+VNYAFPF FMD +HGT+
Sbjct:   49 GYVALSSIVEFAYYHRRRGDETSWKCQPRAIRPGDXXXXXXXHRRGSSRKKYAWGLPLLDLFASSXXXXXXXXRGRHPKHATFASLNLLVSALFAGATAEATARGHSSLTSWTAPPLT---SLVALVKIILWQSVLEYYWHRAMHAPRLYKRLHKYHHHYKSPRPFDDLFIHPLEAAGYCAILYSSAFVCGEVPIASFLAYMAIMGVCGIIDHCGVRFRVGFXXXXXXXXXXXXXXXXKKSISKTITETTGADIGVEVYASRFHDLHHERFDVNYAFPFAFMDALHGTF 334
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1237.1943.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S1GXN0_HEMAN8.480e-7043.51Hypothetical protein (Fragment) n=2 Tax=Hemiselmis... [more]
C1FEX9_MICCC1.300e-6645.76C-4 sterol methyl oxidase n=1 Tax=Micromonas commo... [more]
L1JX35_GUITC4.720e-6643.58Sterol desaturase n=2 Tax=Guillardia theta TaxID=5... [more]
A0A482SNF4_9ARCH2.810e-6544.13Fatty acid hydroxylase family protein n=1 Tax=arch... [more]
A0A7S3D0N0_9EUKA3.650e-5940.50Hypothetical protein n=4 Tax=Palpitomonas bilix Ta... [more]
A0A061RXV7_9CHLO3.880e-5946.06C-4 sterol methyl oxidase n=2 Tax=Tetraselmis sp. ... [more]
A0A830HM61_9CHLO6.590e-5745.42Fatty acid hydroxylase domain-containing protein n... [more]
W7TYR2_9STRA1.640e-5641.84C-4 sterol methyl oxidase n=1 Tax=Nannochloropsis ... [more]
A0A7S0CTL5_MICPS7.980e-5644.57Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
C1MKM3_MICPC4.150e-5338.06Predicted protein n=1 Tax=Micromonas pusilla (stra... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1237contigL-elsbetiae_contig1237:18499..24496 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score222.2
Seed ortholog evalue2.8e-55
Seed eggNOG ortholog296587.XP_002507773.1
Hectar predicted targeting categorysignal anchor
EggNOG free text desc.Belongs to the sterol desaturase family
EggNOG OGs389QD@33090,COG3000@1,KOG0873@2759
COG Functional cat.I
Best tax levelViridiplantae
Best eggNOG OGNA|NA|NA
Exons7
Model size1267
Cds size804
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.94761-UTR-L-elsbetiae_contig1237:18498..187951622815431.94761-UTR-L-elsbetiae_contig1237:18498..18795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 18499..18795 -
1691682895.3345177-UTR-L-elsbetiae_contig1237:18498..187951691682895.3345177-UTR-L-elsbetiae_contig1237:18498..18795Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 18499..18795 -
1622815432.0328138-UTR-L-elsbetiae_contig1237:24101..241211622815432.0328138-UTR-L-elsbetiae_contig1237:24101..24121Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 24102..24121 -
1691682895.395337-UTR-L-elsbetiae_contig1237:24101..241211691682895.395337-UTR-L-elsbetiae_contig1237:24101..24121Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 24102..24121 -
1622815432.044236-UTR-L-elsbetiae_contig1237:24350..244961622815432.044236-UTR-L-elsbetiae_contig1237:24350..24496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 24351..24496 -
1691682895.406735-UTR-L-elsbetiae_contig1237:24350..244961691682895.406735-UTR-L-elsbetiae_contig1237:24350..24496Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 24351..24496 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.959887-CDS-L-elsbetiae_contig1237:18795..189291622815431.959887-CDS-L-elsbetiae_contig1237:18795..18929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 18796..18929 -
1691682895.3461108-CDS-L-elsbetiae_contig1237:18795..189291691682895.3461108-CDS-L-elsbetiae_contig1237:18795..18929Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 18796..18929 -
1622815431.9703426-CDS-L-elsbetiae_contig1237:19596..198501622815431.9703426-CDS-L-elsbetiae_contig1237:19596..19850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 19597..19850 -
1691682895.3562086-CDS-L-elsbetiae_contig1237:19596..198501691682895.3562086-CDS-L-elsbetiae_contig1237:19596..19850Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 19597..19850 -
1622815431.983303-CDS-L-elsbetiae_contig1237:20476..206101622815431.983303-CDS-L-elsbetiae_contig1237:20476..20610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 20477..20610 -
1691682895.3643274-CDS-L-elsbetiae_contig1237:20476..206101691682895.3643274-CDS-L-elsbetiae_contig1237:20476..20610Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 20477..20610 -
1622815431.994923-CDS-L-elsbetiae_contig1237:21110..212571622815431.994923-CDS-L-elsbetiae_contig1237:21110..21257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 21111..21257 -
1691682895.3718512-CDS-L-elsbetiae_contig1237:21110..212571691682895.3718512-CDS-L-elsbetiae_contig1237:21110..21257Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 21111..21257 -
1622815432.0082278-CDS-L-elsbetiae_contig1237:21844..219231622815432.0082278-CDS-L-elsbetiae_contig1237:21844..21923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 21845..21923 -
1691682895.379645-CDS-L-elsbetiae_contig1237:21844..219231691682895.379645-CDS-L-elsbetiae_contig1237:21844..21923Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 21845..21923 -
1622815432.0209062-CDS-L-elsbetiae_contig1237:24045..241011622815432.0209062-CDS-L-elsbetiae_contig1237:24045..24101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 24046..24101 -
1691682895.3874962-CDS-L-elsbetiae_contig1237:24045..241011691682895.3874962-CDS-L-elsbetiae_contig1237:24045..24101Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 24046..24101 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1237.1943.1prot_L-elsbetiae_contig1237.1943.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1237 18796..24101 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1237.1943.1

>prot_L-elsbetiae_contig1237.1943.1 ID=prot_L-elsbetiae_contig1237.1943.1|Name=mRNA_L-elsbetiae_contig1237.1943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
MSAFLGGFFFMASGYVLLSSAMQFFFYCRRASSPGKWKIRPERAHTLKDQ
ETRRRWWLPLMSLLRTGRDKNGRHPLHGLFATFNIVMACVFAGTVTHCIV
AGKTKVFWDTEVGVSWWRTAVGLLQSLAWQSVLEYYWHRFMHLRPVYGRL
HKFHHFYKSPEPFDDLMIHPLEAFGYYLQLYSPPLLIAMPLSSFLVYMAV
CGVCGVLDHSGVKLSVPGLYDTADHDRHHSRFEVNYAFPFPFMDVVHGTY
EGKFLGKRYCSHPRRSR*
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mRNA from alignment at L-elsbetiae_contig1237:18499..24496-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1237.1943.1 ID=mRNA_L-elsbetiae_contig1237.1943.1|Name=mRNA_L-elsbetiae_contig1237.1943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5998bp|location=Sequence derived from alignment at L-elsbetiae_contig1237:18499..24496- (Laminarionema elsbetiae ELsaHSoW15)
CATCGAGCTGCTTCAGTCCACAGGCCACGCAGCACGGACCTTCGAGAACC
GAGAACGGCGAACGAACTCACAGGGGACTCTGACTATGCAACCCATCACC
CAAGTTCCCAGATATTGACCTGGTGCATGCTTTGGAAATTGGCCAGGTGA
TCGTTTGTGCAACAGCAGAGGGAAGACAAGAGTTTCTGTTTACCTGTGTC
GCCGCCTGCCTGGAGAATACAACACAGCTGCACGCCATATGTATGTATTG
CGGCCGCGTTTGCCGTCCTCCTTCCTTTCGGCTTGTAGCGACCGCTGTCT
CTGTGTATGTGTTGAGCGAGCGTGTACAGCGTGAAACCAGTTTCTGCATT
CGCTGGCCGCGAAACAAACTTGCAGATCAACGCCCACGAGAGAGGATGTC
AGCATTCCTCGGGGGCTTCTTCTTCATGGCAAGCGGATACGTGCTTCTCA
GGTAAATATCTGCAATTACTATAGATATAATACCAACGCCAAGATCTTGC
TGCACTCTCAGCAGACAGCTTCTTGATTGCCATCGACCGGTCGCGTTGTT
GGGCTTGCTATAGATGGTATTGTATCGTCGACAGAATCCCCGACTACGGG
ACCTGCGGAGTATTTCGATTTTTGACTGAAGTGAGGAAGTCAGAAACATG
AACGACTTTTCAGACAGGGCGTACATACCGGTAGTACATAGACTGCTGGT
ATTTGTACTCCTATACATTAAGGGGAGGGGGGACAACGCTGGGAAACATG
GCGTCACAAAATCCAAGACAAAAAAAAAATCGGGCCCCCTCTGCCTTTTT
CGAACCCTTCTTCTACATGTAAAAAGGTTTAGGATCAGGTATTCTTCGTA
CTATACAGCTCTCTGCGTAAAGGACACCACGGAGAAGGGTGCGATGCGTG
CTGGCATGTGCAGATCTGCTCCTGGGGTGGAGTTATCGAGCACCGCAGCA
GTCCTGCAGAACTCTGCAATCTGGGCCAACGACAGCAGACATCCACTGCT
CAGCTGCTGTGGACCCGTATTTCAGGAGGTTGGGGTCTGTGGCGGCGAAC
TCAGCAGTGGATGTTTGCAGTCGTCGGCCGACTGCGGAGTTTTGTAGAGC
TACTGCTGCAGTGCTCCATAACTCCACCCCAACAGCAGATCTTCACATGC
CAGCACGCATCACACCCTTCTCCATGGTGTCCTCTACGCACAGAGCTGTG
TAGTACGAAAAAATCGTATCACAAATCTTATTTTGAACGACCGCAATGTG
GCCTGTTCTGTCTTGGTTTTTAAAGTGCAGGATTTTTTGTTTTGATTTTA
AAGTTCACGGTTGAATTTAGACTACTGTATGATGTGTATGCAAATAACAG
CCCCGCTACCCGCTGGGTGAGCGAATTAACAGTTTTCTTCTTGCGCAACG
TTTCCCTACTGGTCCGGTAGATCGGCTGTGTGCTTTAGGCGGCGGGTAGG
GGGGGGGGCACAGTGTACTTTGGATCCAGGGGCTCAGTGACGAGCACGAT
TTGATTATTTTTTGAATGCACACTTTTTTGGGGTGTGCGAAAATCGGCTG
CACGGACCCTCCCAAAAACACCCTTTCCAGTTCGGCCCTCAGCATCCCGC
TGCTATACCCGTCGACCCACTCCAACGCCACAGTTTGTGTTTCTCTGCAG
CTTTTTGCTTTGCACAACATTTCTAGCTGTCTTGAAGGCAAAGATTTTGC
TCTCCAAAGGTGCAAAAAACACGGATTCCACAGCACTGTCAAGAGATAGG
CTGAACTACCAACTTGGTGTTCAAGAGATCAGATAGCTCGCCCCTCGTAC
GCAAGAATGGTGGAAGATGCTGGGAGTGCCTACTGATATGGTGTGTAGGG
GCCGCCGCATGTCCTTGGTAGCAGCAGCAGATAGCTAGAAGCCACGCTTT
CGATGTGCTGGTGGACACGACCGACTTTCTGGACGGTCTTTTTTTCGGTG
AATCAGGTGGGTATTTGAGACTGCCCCCCGGAGCCTAACACCGTGATTTT
TGCACCGATCAAAAAATGGACTCGACGCGATTGTAGCCCGGCTGTTTTCA
AAGAGTGTGGGATAGAGGAGGGGTCCAGCAGCAAATTGCCAATAGGTAAT
AATTCACGCGCGCAAGGGGGGTCATATAAAAACTCTACGCAAATACGACA
AAAAAGAGCTGACAACATCGGAACATCTCTGTTTTTTTGGCTGCACTGTG
AGAACATGCGGGCATTTTTGGAAAGCTCAGACAAACTTCAAGTGAGGCTC
CGTGATGTTCAGCGGGGGTATGCGATTATTCTTCGAGAAAGGCCTATACT
GATCAATGGGTTCCCCTCACCGCAGCCTTCATGTGTGCTAGTTCGGGCAT
TTTTTAATTTGCCTAGTTCCAAAAATCGTTGTCAACCCCCCCTTCATTGA
ACATGCACGGCGGTACAATAGTGCCTGTCGGCTTTGGGTAATCGGCGTTG
CTGCCAAGACACTCAGGATAGGATTGAAATGCGTGAGCAGAATGCGTCAA
GGCCTATAATGTATCATGCTTACCCAACGCGCTCTCTTCCTCCTTTCGCT
TCCCACCTGCCCTCCGCCCCCAGCTCTGCCATGCAGTTCTTTTTCTACTG
TAGACGCGCCTCCAGTCCCGGAAAATGGAAAATCCGACCAGAGAGAGCCC
ACGTGAGTCGAGCCGAGTTTTTGCCTTCCTGCGCCACTTCCGTTGTAAGA
ATTGCCGCACAACACACTAGTGGCGCAGCCTTGGTGGTCCTACGGTGGCT
AGCGGCCGTAGTGTTGATGCTCGCACGTTGCTCTATCCACCGCCGTTCAC
AACCTCTGTTGTGGGTCTTGTTTACTGCCTCTCCTTCGATACCCACAAGC
TATTAATTCATTAATTATGCCTGTTCTGTAAGATAGCCTTCACAGTTTGC
CCATTTCCCAGATATCCGACAAAAAAACTCGAGAATTCACCGGTAAATGT
GTGGGTATCCGTAAGAAAAAATTGGAGTATTTTATTTGAGCCGTGGTATT
ATTCATATTGATCAGATATCAGATACCCTCAGCACCATAGACTATTACGT
GACTCTTGCTGTGTTGGAAGGACGGAAGTTCATTTTCAGACCCACATCGA
CTTGACTTGTTGCCAGAGGGCGGTCGTTGTCTCTTTCGATTTGGCACCCA
AACACCCCCCCTCGTTTCTCGCCCCTTACCCTGCCTACCCTTCCGCCCTC
CCCGCTCTTTCTCGGACTCAACGGCCGACTCTACCGCAGACGTTGAAAGA
CCAGGAGACCCGCCGACGGTGGTGGCTCCCGCTTATGAGTCTCCTCCGAA
CAGGTCGCGACAAAAACGGCCGACATCCTCTGCACGGCCTGTTCGCGACG
TTCAATATTGTGATGGCGTGCGTGTTTGCCGGGACGGTGAGCCTTTGTCG
GTGTTGCCTCGCCCCCGGTGGGGAACATGGCCGTAGAAGAGTTGAAGGCG
CAGCGTGCGGCGGCTGCCGCTCGTTGTGAATGCATACTTCGTACATACGA
GGTTTTGCCCCGAGATGATAGCCCTTAGAGAACAGCACACCACCCCCGAG
TGGTGTTTGGCGCACGGTTTGCGTGCAACATACGCAGAGAGCGGGCATAG
TTCCTGGCGCAAATGCCGACCACGATTCCTCGCGTCACGGCTGGGTCCGC
ATCAAACTCTACCAAGTATTCCACTGTTTCTAGACAGACCTGTTATCGTC
GCACCGCGGCAGCCGCAAAAACTCCACGGGGGAGAAAGGTGCGGCGTGCG
GCATGCTTTATGGGGCGAAACCCGTGTATTGGTTCAGGTTTAGGTCCGGC
TAGGGGTCGGTTTCGAAAGGCCTTCTCCAGCAACTAACGCTTAAAAAGGT
TAGTTGTGTTGTCTTCCTCCGCCCGCGATTGCCCAGGTGACGCACTGCAT
CGTGGCGGGAAAGACGAAAGTATTCTGGGACACGGAAGTAGGCGTTTCGT
GGTGGCGTACGGCGGTGGGGCTGCTGCAGTCTCTGGCGTGGCAAAGCGTC
TTGGAATACTACTGGCACAGGTTGGTATCTCTTTGGAAGGGCCTGGACTT
CTTGCGATATTACTCTGGCGTCCTAGTGGCCTGTGTGCTCATCCCGGCAC
GTTCGGGTGGATCGAGAATTAAATCATCTCGAGTTGAGATGAAGAGAAGA
TGCAGTCCTTGCCTGACCACTGACATCACCCCCCACCTGGCATGTGCCTC
ATTATTTTGCTGAGCTGGGAAAACCCAAGCCGCCTTGTCGCCCGCCGTAC
ATATCAGCGTCATAATGCTGGAGGTGTTTACGAGAAGCTGACACTGCACT
GTGTATATCGCTTAATCAGGCCGTATTCCTTTGGTTCTCGGGTATGATCA
AGGGTGGTGTCGCGTGGTCAAACTCACACTCAGGCCCTGCCGCATGTCGC
CTCTACGAAAGGGTTTGATCGTTTTTGGAACGTTCTGGTTTCGTGCCTGG
GGAGGGAAACGCACATCCTGCCTTTTGCTGCTGTGCGTTTTTGCTCACGT
TCTTCTTGGTAAACGCCGCGTATTATTTTCTGGTTTCGTGCCTGGGGAGG
GAAACGCACATCCTGCCTTTTGCTGCTGTGCGTTTTTGCTCACGTTCTTC
TTGGTATAAACGCCGCGTATTCTTTTTTCTCGCTCGATTGCGGCAGGTTC
ATGCACCTGCGGCCAGTCTACGGGCGTCTACATAAGTTCCACCACTTCTA
CAAGTCGCCTGAGCCGTTTGACGACTTGATGATCCACCCCCTGGAGGCGT
TCGGGTACTACCTGCAGCTCTACTCCCCCCCCCTTCTGATCGCCATGCCT
CTGTCGAGCTTCTTGGTGTACATGGCCGTGTGCGGGGTGTGCGGGGTCCT
GGACCACAGCGGGGTGAAGCTGTCGGTGCCCGGGTTGTACGATACCGCAG
GTACGGGGGGGGGGCGAGGCGTGGCGAGCACTTGCGCGCGAACGAAACGT
GCATGACCAATCAAATATATACTGATTTCCAGCCCTGCTTGAGCTCGCCT
AGAGGCGCTGTAGCACGGCATCCTTGGTTGTGGTCGGCGGGTGGTTCAAG
GCTTCGTCTCTGGCGGTTTCAGGGAAGTTGTGGTCAGTTCTGCGTTTTGT
TTTTTGCCGTTTTGAGTATAGTCTACCGCAGATGAGGCACACCTCGACCC
AAATCGACGATCACCATGACCCTTTTTCCCTTTCGGAACTACAACCGGCG
TGTTGGGGGCATGTCATATCACGGTACTTAAAATCTGAAGCGGTACTATA
GCAGGGACGATCCAGGGTATTCACGTTTGCATGATGCGAGGACAAAACGT
CAGCAAGGGAGTTTTTGTTGTTTTTTTCCCCTTCCTGAATACATACCTCG
ACGCAACCTTAGCCTTCGTGCGGCTTCTTCCCTTATCCTGGTGGTAGGTG
TGTCACTGATGTACCGGTTTCAGCGATATCGAGCCATGTTATGTATGGTA
CCATTCAACAAACTTCATGTCACGCCAACCAGATGTTCGCATGTTTCGGG
ATGCCAGCGTGAGACGTACACTCCTTCGTTACTGTCCTCCGTCCCTCCCT
CTTAACGCGAACGGCAGATCATGACCGCCACCACTCGCGCTTCGAGGTCA
ACTACGCGTTTCCATTTCCCTTCATGGACGTTGTTCATGGCACCTACGAG
GGGAAGTTCCTGGGAAAGCGGTATTGCAGCCACCCGCGGCGGTCGAGATG
ACCGTCGGATCTAAAGTTAATTGTGTCTGCTATGCCGTTGTTGTCCAGGT
GCGAGTGCCCGCGACACGGAGGAAAGTAGCTGTACAATATTTGGGGGGTC
TGGGGGGTTTAGCCTTCATTTTTACCCCCAAGTTGCTTCACGAAACGTGC
CGGGCGGTGAAGGTACTGAGGGCAAGCGGATGTCGCGCCGCCGCTTCGTC
TACTTCATACAAGTTTTGCTTGGTCTTGGGTGGTGGGCGATCGGAACGGC
AATCAGACCAACGTGTGTATTAAGGGGTGCAGGAGATGAAATATGGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1237:18499..24496-

>mRNA_L-elsbetiae_contig1237.1943.1 ID=mRNA_L-elsbetiae_contig1237.1943.1|Name=mRNA_L-elsbetiae_contig1237.1943.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig1237:18499..24496- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCAGCATTCCTCGGGGGCTTCTTCTTCATGGCAAGCGGATACGTGCT
TCTCAGATGTCAGCATTCCTCGGGGGCTTCTTCTTCATGGCAAGCGGATA
CGTGCTTCTCAGCTCTGCCATGCAGTTCTTTTTCTACTGTAGACGCGCCT
CCAGTCCCGGAAAATGGAAAATCCGACCAGAGAGAGCCCACCTCTGCCAT
GCAGTTCTTTTTCTACTGTAGACGCGCCTCCAGTCCCGGAAAATGGAAAA
TCCGACCAGAGAGAGCCCACACGTTGAAAGACCAGGAGACCCGCCGACGG
TGGTGGCTCCCGCTTATGAGTCTCCTCCGAACAGGTCGCGACAAAAACGG
CCGACATCCTCTGCACGGCCTGTTCGCGACGTTCAATATTGTGATGGCGT
GCGTGTTTGCCGGGACGACGTTGAAAGACCAGGAGACCCGCCGACGGTGG
TGGCTCCCGCTTATGAGTCTCCTCCGAACAGGTCGCGACAAAAACGGCCG
ACATCCTCTGCACGGCCTGTTCGCGACGTTCAATATTGTGATGGCGTGCG
TGTTTGCCGGGACGGTGACGCACTGCATCGTGGCGGGAAAGACGAAAGTA
TTCTGGGACACGGAAGTAGGCGTTTCGTGGTGGCGTACGGCGGTGGGGCT
GCTGCAGTCTCTGGCGTGGCAAAGCGTCTTGGAATACTACTGGCACAGGT
GACGCACTGCATCGTGGCGGGAAAGACGAAAGTATTCTGGGACACGGAAG
TAGGCGTTTCGTGGTGGCGTACGGCGGTGGGGCTGCTGCAGTCTCTGGCG
TGGCAAAGCGTCTTGGAATACTACTGGCACAGGTTCATGCACCTGCGGCC
AGTCTACGGGCGTCTACATAAGTTCCACCACTTCTACAAGTCGCCTGAGC
CGTTTGACGACTTGATGATCCACCCCCTGGAGGCGTTCGGGTACTACCTG
CAGCTCTACTCCCCCCCCCTTCTGATCGCCATGCCTCTGTCGAGCTTCTT
GGTGTACATGGCCGTGTGCGGGGTGTGCGGGGTCCTGGACCACAGCGGGG
TGAAGCTGTCGGTGCCCGGGTTGTACGATACCGCAGGTTCATGCACCTGC
GGCCAGTCTACGGGCGTCTACATAAGTTCCACCACTTCTACAAGTCGCCT
GAGCCGTTTGACGACTTGATGATCCACCCCCTGGAGGCGTTCGGGTACTA
CCTGCAGCTCTACTCCCCCCCCCTTCTGATCGCCATGCCTCTGTCGAGCT
TCTTGGTGTACATGGCCGTGTGCGGGGTGTGCGGGGTCCTGGACCACAGC
GGGGTGAAGCTGTCGGTGCCCGGGTTGTACGATACCGCAGATCATGACCG
CCACCACTCGCGCTTCGAGGTCAACTACGCGTTTCCATTTCCCTTCATGG
ACGTTGTTCATGGCACCTACGAGGGGAAGTTCCTGGGAAAGCGGTATTGC
AGCCACCCGCGGCGGTCGAGATGAATCATGACCGCCACCACTCGCGCTTC
GAGGTCAACTACGCGTTTCCATTTCCCTTCATGGACGTTGTTCATGGCAC
CTACGAGGGGAAGTTCCTGGGAAAGCGGTATTGCAGCCACCCGCGGCGGT
CGAGATGA
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