mRNA_L-elsbetiae_contig1237.1942.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1237.1942.1
Unique NamemRNA_L-elsbetiae_contig1237.1942.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: D8LHQ7_ECTSI (F-box domain and ankyrin repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHQ7_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 4.350e-8
Identity = 46/121 (38.02%), Postives = 66/121 (54.55%), Query Frame = 3 
Query:  315 EETFDLLAQVLTSGQWAKLLEAPLKRAAATGNRGLAHKLVGAGAKIGGA---------LHAATRGGHGEVVSDMVDSGVA--VSAKDNIGGVTPLHVAAQEGKPEMVQLLLLKGGHKDALN 644
            + TF L+    T  QWA+ L APL+ AAATGNR L  KL+GAGA  G           LHAA  GG+ +V++ + ++G    + AK    G TPL +A   GK    + L++ G + + L+
Sbjct:   58 DTTFKLVRDRATPDQWAEWLRAPLEHAAATGNRDLVDKLLGAGANGGAGWRGCHGKTLLHAAAEGGNVQVITRLRNAGAGEDMKAKALDTGHTPLDLAVIGGKEAAAKALIMAGANVNMLD 178
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: A0A6S8KN16_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A6S8KN16_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 1.510e-5
Identity = 43/111 (38.74%), Postives = 63/111 (56.76%), Query Frame = 3 
Query:  381 PLKRAAATGNRGLAHKLVGAGAKIGGALHAATRGGHGEVVSDMVDSGVAVSAKDNIGGVTPLHVAAQEGKPEMVQLLLLKGGHKDALNNDECTPLYLAT--SHGHVAAALV 707
            P+  AAA G+     +L+G G+ I  A+  AT   + E ++ M++ G     ++N+ GVT LHVAAQ G  + V LLL  G      ++D+ TPL LA   ++G VA ALV
Sbjct:  520 PVMFAAAGGHTECVKELIGLGSNIN-AIAKATPD-YAERLAKMIEEGTVTDTENNVDGVTALHVAAQGGHLDTVNLLLENGAKPAVADDDQRTPLTLAIKGNYGEVALALV 628
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: C5FIT0_ARTOC (Ankyrin 2 n=1 Tax=Arthroderma otae (strain ATCC MYA-4605 / CBS 113480) TaxID=554155 RepID=C5FIT0_ARTOC)

HSP 1 Score: 58.5 bits (140), Expect = 3.610e-5
Identity = 32/77 (41.56%), Postives = 46/77 (59.74%), Query Frame = 3 
Query:  462 LHAATRGGHGEVVSDMVDSGVAVSAKDNIGGVTPLHVAAQEGKPEMVQLLLLKGGHKDALNNDECTPLYLATSHGHV 692
            L  AT G   E V  +VD+ V+V    N+G +TPLH+AA +GK ++V+ LL KG   D    +  TPL ++ S GH+
Sbjct:  934 LTTATGGSSFEAVRILVDNNVSVDGCSNMGVMTPLHMAAYDGKTKVVEFLLQKGAIIDRCGPEGLTPLAISVSKGHL 1010
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: A0A6H5KSG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSG6_9PHAE)

HSP 1 Score: 55.1 bits (131), Expect = 4.830e-5
Identity = 30/68 (44.12%), Postives = 40/68 (58.82%), Query Frame = 2 
Query:  713 AAGADVNRRFGGSKTSIMHLAAEEGLVDIMRAAIERGADVNAADTDQGTPLHTAVSLDQLGAIIVLVK 916
            AAGAD++ R G +  S +  AA  G VD++RA +  G DVNA D+   T LH     +Q GAI  LV+
Sbjct:   56 AAGADLSLRSGDNNESALETAAINGDVDVVRAMVRHGVDVNARDSQGLTALHAVAESNQAGAIDALVE 123
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: A0A7M7HEV6_NASVI (Uncharacterized protein n=1 Tax=Nasonia vitripennis TaxID=7425 RepID=A0A7M7HEV6_NASVI)

HSP 1 Score: 57.8 bits (138), Expect = 4.910e-5
Identity = 28/77 (36.36%), Postives = 48/77 (62.34%), Query Frame = 3 
Query:  486 HGEVVSDMVDSGVAVSAKDNIGGVTPLHVAAQEGKPEMVQLLLLKGGHKDALNNDECTPLYLATSHGHVAAALVSLL 716
            H  +V  +++ GV++S ++++     LH+AA  GK +MVQ+LL  G + + L  D+  PLYLA +   ++ AL +LL
Sbjct:  280 HAGLVRALIELGVSISERESVNQYQALHLAAANGKKQMVQILLEYGANPNTLAGDDVFPLYLAAARSDMSLALKTLL 356
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BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Match: UPI001404194C (ankyrin-1-like n=1 Tax=Petromyzon marinus TaxID=7757 RepID=UPI001404194C)

HSP 1 Score: 57.4 bits (137), Expect = 7.630e-5
Identity = 39/91 (42.86%), Postives = 51/91 (56.04%), Query Frame = 3 
Query:  459 ALHAATRGGHGEVVSDMVDSGVA-------VSAKD--NIGGVTPLHVAAQEGKPEMVQLLLLKGGHK-DALNNDECTPLYLATSHGHVAAA 701
            ALH A   G  E    ++++G A        SA D  N    TPLH+AA+ G+PE+V+LLL  GG   +AL+N   TPL+ A    HVAAA
Sbjct:  676 ALHFAAAAGSAEATGVLLEAGRAGKTNSKRKSAADERNTWRKTPLHIAAETGRPELVELLLKSGGASLNALDNSRDTPLHCAVRGAHVAAA 766
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1237.1942.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
D8LHQ7_ECTSI4.350e-838.02F-box domain and ankyrin repeat protein n=1 Tax=Ec... [more]
A0A6S8KN16_9STRA1.510e-538.74Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
C5FIT0_ARTOC3.610e-541.56Ankyrin 2 n=1 Tax=Arthroderma otae (strain ATCC MY... [more]
A0A6H5KSG6_9PHAE4.830e-544.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7M7HEV6_NASVI4.910e-536.36Uncharacterized protein n=1 Tax=Nasonia vitripenni... [more]
UPI001404194C7.630e-542.86ankyrin-1-like n=1 Tax=Petromyzon marinus TaxID=77... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1237contigL-elsbetiae_contig1237:12084..14734 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score93.2
Seed ortholog evalue1.2e-16
Seed eggNOG ortholog2880.D8LL12
KEGG koko:K21440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size1852
Cds size489
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1237.1942.1prot_L-elsbetiae_contig1237.1942.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1237 13971..14459 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.8748152-UTR-L-elsbetiae_contig1237:12083..128661622815431.8748152-UTR-L-elsbetiae_contig1237:12083..12866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 12084..12866 -
1691682895.2965927-UTR-L-elsbetiae_contig1237:12083..128661691682895.2965927-UTR-L-elsbetiae_contig1237:12083..12866Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 12084..12866 -
1622815431.8847284-UTR-L-elsbetiae_contig1237:13665..139701622815431.8847284-UTR-L-elsbetiae_contig1237:13665..13970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 13666..13970 -
1691682895.30973-UTR-L-elsbetiae_contig1237:13665..139701691682895.30973-UTR-L-elsbetiae_contig1237:13665..13970Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 13666..13970 -
1622815431.9107053-UTR-L-elsbetiae_contig1237:14459..147341622815431.9107053-UTR-L-elsbetiae_contig1237:14459..14734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 14460..14734 -
1691682895.325668-UTR-L-elsbetiae_contig1237:14459..147341691682895.325668-UTR-L-elsbetiae_contig1237:14459..14734Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1237 14460..14734 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.896459-CDS-L-elsbetiae_contig1237:13970..144591622815431.896459-CDS-L-elsbetiae_contig1237:13970..14459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 13971..14459 -
1691682895.3176234-CDS-L-elsbetiae_contig1237:13970..144591691682895.3176234-CDS-L-elsbetiae_contig1237:13970..14459Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1237 13971..14459 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1237.1942.1

>prot_L-elsbetiae_contig1237.1942.1 ID=prot_L-elsbetiae_contig1237.1942.1|Name=mRNA_L-elsbetiae_contig1237.1942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=163bp
MANRNEREALRGAEETFDLLAQVLTSGQWAKLLEAPLKRAAATGNRGLAH
KLVGAGAKIGGALHAATRGGHGEVVSDMVDSGVAVSAKDNIGGVTPLHVA
AQEGKPEMVQLLLLKGGHKDALNNDECTPLYLATSHGHVAAALVSLLPVQ
TSIVGSADLRRR*
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mRNA from alignment at L-elsbetiae_contig1237:12084..14734-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1237.1942.1 ID=mRNA_L-elsbetiae_contig1237.1942.1|Name=mRNA_L-elsbetiae_contig1237.1942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2651bp|location=Sequence derived from alignment at L-elsbetiae_contig1237:12084..14734- (Laminarionema elsbetiae ELsaHSoW15)
GACGGTAGGTATGCGTGAAAGACCTGACAGCTGACAGCTGATCTCGCTCG
AAAATGGTCGAGAGGCGATGCTGTCGAATTCCGGGGATGTTTGGTGATTT
TTCTTGATTTGGTAGAGGAGGCGTTTCGATGTCGACTTGTGGACTGGAGA
CACTTGAGTTGGTCGTGTTGAAGGGACACACTGCTTCTCCACCAACTACA
GCAACACAGAGACGGGAGGAACTCTCGTGAACGAGAGAGGCTACATAAAA
TTCACAGCTTCTGGCAGTCAATCACATGGCGAACAGGAACGAACGAGAAG
CACTTCGAGGAGCAGAGGAGACGTTCGACCTCTTGGCCCAAGTTTTGACA
TCGGGACAGTGGGCGAAATTGTTGGAAGCTCCACTAAAGCGCGCCGCAGC
CACGGGCAACAGAGGCCTCGCACATAAGCTGGTGGGCGCAGGAGCAAAGA
TTGGGGGTGCACTACATGCAGCCACTCGGGGCGGCCATGGAGAGGTAGTG
AGCGATATGGTGGACAGTGGGGTAGCTGTGTCCGCCAAGGACAACATTGG
CGGCGTGACCCCTCTCCATGTTGCTGCTCAAGAAGGAAAGCCGGAGATGG
TGCAGCTGTTGTTGCTTAAGGGGGGTCACAAAGATGCGTTGAACAACGAC
GAATGCACACCGCTTTATCTGGCCACCTCGCATGGCCACGTGGCTGCCGC
CCTAGTTTCCTTGCTGCCGGTGCAGACGTCAATCGTAGGTTCGGCGGATC
TAAGACGTCGATAATGCACCTGGCGGCTGAAGAGGGACTTGTTGACATCA
TGAGGGCGGCGATCGAACGGGGGGCAGACGTGAACGCAGCTGACACAGAC
CAAGGCACACCCCTTCATACTGCTGTGAGTTTAGACCAATTGGGGGCGAT
CATTGTGCTCGTGAAGGCTGGGAGCAACATACAAGCATGGGATCGTGACG
GCAGAACACCTCTTCACTATGCTGCTGGCCGCGCCAGTCTCGAAGCCCTG
TTGTCCCTCTTGAAGCATGGGGCCCACGTCAACGCCCAAGACAAGGACCA
AGAAACGCCGTTGCACTGGGTGGGAATCCGATGTTAGATTTTTGCAATTT
GCATCTGGGTCGCTACTCTTGTCCATTAAGGTTTATTCAAGAAAACGCGA
GACAACCCGGGGATCATCCTGAAATTAGACTGAAATATATTTTCCCCGCG
CCTACGTTCCACACAACGGTTCTGGCTTTACAGACTTCCCATGTGGGTAA
TTTTGGGCCGGGGATCACGAATATATCATCAGAATACCCTGGCTCGGCAG
TGCGATCGAATTATAGGTGTACAAAAGCCGGGCTTTCCTGAGCAATTTCA
AGATAGAAATTTGAAATTCGAATCCCGACACGAGTTTTTGTCTGATCAAC
TATCTAAGTGGCTCTACCCCCCCTAAATCGGCCAAGCGGAGTCGATTGAC
GCGAGGTTCCAAAAGAAATTCGTTTGGGAACGCGGCGAAAAAAAAGTTCA
GGCTGAAGGGGACCTTTTTTTTTTTGGAGCCTTTTTTTAAACATCATTTT
TGCACGTTTTAGAACCACCCACGAAGTCGTTTTTTCGTTTTGTTTTTTTT
TTGAGGTCAGGAAAGGATATTTCGCTTTAGCGCGGATGGCGCCTATTGCA
ATAGTGATACTGCCCTGAATAGTGGTATGTTTATCGTCTGCCCGTACATA
CCACTATATAGGGCCACCTACTGTATGTGTATCGCTGAGCCCTGTCTGCG
GGTGCACTCCTCAGTCCTAGCTGCGTTGTTCCTTGATCGCGTTATTTCTT
TGATTCAGCCGTGTTGCTTGAGCAAAAGCTTCTATTATTTGTCCATCCCA
ACCCGACCGCCCCCTCAGGAGAGATACCGAGAATAACCTACCGCAGCACC
TCCGGAGGAAGGAGCTTTTTCATGATCCACGGCATCAACATTCCATGGAA
CAGGTTGAGTATCGACACTGTCCCCCACTACGCTGTGTTGCTGCTGCAGA
TAATTGGGGCAACACAGAATGCTCGTCGGGCTGCAGTGGAACGACACCAG
CGATGAGCGCACCGGTGGCTGATTCAGAATTTTCTTGTTCGTCGGCGAGG
TTTTCTGCTTCTGAGCACTAAACGGAACGTGGCCAGATGCACCTACACTT
ACTATCCCACGTGTTGTTTCCCGCGTGCGGAGAGAGGTAAAATGAGCGCC
AACGTAAACTATACCTCGCATTTGTGCGGCCAATGACACGGGGGGAAGGG
GGCACACCATAAGAGACGGGCAAGACTTGGCGGGTGTGTCTTTGAGTAGG
GTGGGAGTGGGCCATGTATAGGCTAGGGGGAATCCCCACGGGTTCCCGCC
GAAGCAGTCGTTGGTCGAGGGGGTCCGTAGCGGGGGGCGTTGTTTTCATT
GAGGTCCTATAAAACTGATTTCGTGTACATTGTATGTACGAGGCCACACG
ATGTGCATGGTCCTGTCTATTCTCTTTGGCATGTAGAGCCTCTCAAGTAC
CCGCTATTTAGATTCGACGATGGGCGTTTCGTTTGGTGAGATTTGCGTGG
CGCTCCCCTGCTTGACAAACGCTCACGATCTTGCGCTCCCCGTAGTTTGC
ATATCTCCAGCTTTGCATGAACTTACAAACTTTCGCGACCTTTCGACGGA
C
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1237:12084..14734-

>mRNA_L-elsbetiae_contig1237.1942.1 ID=mRNA_L-elsbetiae_contig1237.1942.1|Name=mRNA_L-elsbetiae_contig1237.1942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=978bp|location=Sequence derived from alignment at L-elsbetiae_contig1237:12084..14734- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGAACAGGAACGAACGAGAAGCACTTCGAGGAGCAGAGGAGACGTT
CGACCTCTTGGCCCAAGTTTTGACATCGGGACAGTGGGCGAAATTGTTGG
AAGCTCCACTAAAGCGCGCCGCAGCCACGGGCAACAGAGGCCTCGCACAT
AAGCTGGTGGGCGCAGGAGCAAAGATTGGGGGTGCACTACATGCAGCCAC
TCGGGGCGGCCATGGAGAGGTAGTGAGCGATATGGTGGACAGTGGGGTAG
CTGTGTCCGCCAAGGACAACATTGGCGGCGTGACCCCTCTCCATGTTGCT
GCTCAAGAAGGAAAGCCGGAGATGGTGCAGCTGTTGTTGCTTAAGGGGGG
TCACAAAGATGCGTTGAACAACGACGAATGCACACCGCTTTATCTGGCCA
CCTCGCATGGCCACGTGGCTGCCGCCCTAGTTTCCTTGCTGCCGGTGCAG
ACGTCAATCGTAGGTTCGGCGGATCTAAGACGTCGATAAATGGCGAACAG
GAACGAACGAGAAGCACTTCGAGGAGCAGAGGAGACGTTCGACCTCTTGG
CCCAAGTTTTGACATCGGGACAGTGGGCGAAATTGTTGGAAGCTCCACTA
AAGCGCGCCGCAGCCACGGGCAACAGAGGCCTCGCACATAAGCTGGTGGG
CGCAGGAGCAAAGATTGGGGGTGCACTACATGCAGCCACTCGGGGCGGCC
ATGGAGAGGTAGTGAGCGATATGGTGGACAGTGGGGTAGCTGTGTCCGCC
AAGGACAACATTGGCGGCGTGACCCCTCTCCATGTTGCTGCTCAAGAAGG
AAAGCCGGAGATGGTGCAGCTGTTGTTGCTTAAGGGGGGTCACAAAGATG
CGTTGAACAACGACGAATGCACACCGCTTTATCTGGCCACCTCGCATGGC
CACGTGGCTGCCGCCCTAGTTTCCTTGCTGCCGGTGCAGACGTCAATCGT
AGGTTCGGCGGATCTAAGACGTCGATAA
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