mRNA_L-elsbetiae_contig1236.1938.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1236.1938.1 vs. uniprot
Match: D8LK50_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LK50_ECTSI) HSP 1 Score: 830 bits (2145), Expect = 1.920e-290 Identity = 565/862 (65.55%), Postives = 619/862 (71.81%), Query Frame = 1 Query: 46 MSTRGGRGGWAGDKSKRFMMVGTKDA-GGGAKTGVVAPVPINTPSLRQEIHGSQGNNTGIASINRSTSGGGWGSAVGASSTSEDNAAGQGASXXXXXXXXVGSSRQGGDDVFIRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKPEPAKGQGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVASAPKPEERRRPVTSFADEISSKSRWTERSPQQGVDRARRGGRGGEGRGFGGSAWETSKE-------GSQGFGKXXXXXXXXXXXGDALHDK-DRGSLRXXXXXXXXXXXXXXXXXFGTGGHVGAANSSQDSTTNAGTKTPTTTYVRQHGPPPRKPA--AATPAPTAQHDHPPVVQQPTRSSAYSASTRSSDQSREDTWGKSAEISPKWRSA-----QQSADTPPEAPPTLDSPSIQSASYVRAHGPPRRTGREAQADEHSASSASFSRQEHDAGGESTSRFGGSWGASEQSRAVIDKESSGGVERTLSGRWKEPADSLAPPPPPTNTRWKEPKEDPKAGARRWKTKEEGQTGSGRWGRSTEEEGDMDGGSAXXXXXXXXXXXXXXXQAPLEDWQQGGAQASRQLQQDQPGRPVDQQLHQQHPIHQSXXGQPA-QPLHLHEHAHLDRGYQRNPAEGFSSFQHQKHQMQEPALHQFQPEQFQAQVYHNQPQAGRAPPPEQHLHRPPYQSDHIPIQRQQF-QVQSSQQTQASQQRAQPSLHQPYQQQPPXXXXXXXXXXXXXXXXXGH---------QQLDISRQASQAQQQMHIQXXXXXMQHPSSAFMMPSQGMGYADPRAARGGGLGGLPVQMASSNMYGD-------VPQAQQQGGIPPSGVYGFQSHE 2529 M+ RGGRGGWAGDK+KR+MMVGTKDA GAKTGVVAPVPINTPSLRQEI QG+N G A+INRS SGGGWGSAV ASS S ++AAGQ XXXXXX GS RQ GDDVF RHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPK EPAK QGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVA+APKPEERRRP+ SFADEIS+KSRW ER Q+G R R G GRG GG+ WE +KE G +GF + DA +K DR S R FG+G HVG A+S+QDST+ +KTP+TTYVRQHGPPPRK A A TPAP AQ + P V QQPTRSSAYSAS S+DQS D WGKS E KWRSA Q + D PPEAP DSPS QS SYVRAHGPPRR+GRE QADE +S S SR +HDAGGE TSRFGGSWGA EQ + +DK+SS G+ERT SGRWKEPA SLAPPP PTNTRWKEPKE+P+AGARRWK +E+GQ G GRWGRS EE+ D+D XXXXXXXXXXX PLE+WQQGGAQASR+ QQ+Q V+ QL QQ P+HQS QPA QPLHLHEHA+LDRGYQRNP+EGFSSFQ QKHQMQ+P LHQFQ E FQAQ Y NQ A R P PEQHL R YQSDH+P+QRQ F QVQ Q +H P Q XXXXXXXXXXXXXXX GH QQLD+SRQ SQAQQ MH+ MQHPSSAFMMPSQGMG DPR ARG GLGGLPVQMA+ Y D +Q Q G+ G YG QS E Sbjct: 1 MAARGGRGGWAGDKTKRYMMVGTKDAVPAGAKTGVVAPVPINTPSLRQEI---QGDNAGTAAINRSGSGGGWGSAV-ASSASANSAAGQXXXXXXXXXRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEISTKSRWAERPLQEGGSRGR-----GAGRGTGGT-WEMNKERGRDSGQGGRGFERAERGRR------DAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSKTPSTTYVRQHGPPPRKVATPATTPAPAAQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSVETPSKWRSASPSNPQPAMDAPPEAPQMPDSPSSQSGSYVRAHGPPRRSGREGQADERGETSISSSRPDHDAGGEPTSRFGGSWGAPEQGQNAMDKDSSAGIERTQSGRWKEPAGSLAPPPHPTNTRWKEPKEEPRAGARRWKAREDGQMGGGRWGRSAEEDADIDDSXXXXXXXXXXXXX-----VPLEEWQQGGAQASRRSQQNQTAHAVEPQLQQQQPVHQSH--QPASQPLHLHEHANLDRGYQRNPSEGFSSFQPQKHQMQDPGLHQFQAEHFQAQAYQNQQSASRGPLPEQHLPRHQYQSDHVPVQRQHFNQVQIPQ-----------HMHPP-QHSAXXXXXXXXXXXXXXXXHQGHPQQQVYHQGQQLDMSRQTSQAQQ-MHMHQHHLQMQHPSSAFMMPSQGMG-TDPRGARGVGLGGLPVQMATP--YRDEQXXXXXXXXSQHQAGMSAPGAYGVQSPE 823
BLAST of mRNA_L-elsbetiae_contig1236.1938.1 vs. uniprot
Match: A0A6H5KJY1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJY1_9PHAE) HSP 1 Score: 597 bits (1539), Expect = 1.160e-195 Identity = 369/563 (65.54%), Postives = 406/563 (72.11%), Query Frame = 1 Query: 46 MSTRGGRGGWAGDKSKRFMMVGTKDA-GGGAKTGVVAPVPINTPSLRQEIHGSQGNNTGIASINRSTSGGGWGSAVGASSTSEDNAAGQGASXXXXXXXXVGSSRQGGDDVFIRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKPEPAKGQGPSLRPRAMLKPTGSAGGGSAATAAAQAAIADAVHNRVASAPKPEERRRPVTSFADEISSKSRWTERSPQQGVDRARRGGRGGEGRGFGGSAWETSKE-------GSQGFGKXXXXXXXXXXXGDALHDK-DRGSLRXXXXXXXXXXXXXXXXXFGTGGHVGAANSSQDSTTNAGTKTPTTTYVRQHGPPPRKPA--AATPAPTAQHDHPPVVQQPTRSSAYSASTRSSDQSREDTWGKSAEISPKWRSA-----QQSADTPPEAPPTLDSPSIQSASYVRAHGPPRRTGREAQADEHSASSASFSRQEHDAGGESTSRFGGSWGASEQSRAVIDKESSGGVERTLSGRWKEPADSLAPPPPPTNTRWKEPKEDPKAGARRWKTKEEGQTGSGRWGRSTEEEGDMDGGSA 1686 M+ RGGRGGWAGDK+KR+MMVGTKDA GAKTGVVAPVPINTPSLRQEI QG N G A+INRS SGGGWGSAV SS S ++AAGQ + GS RQ GDDVF RHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPK EPAK QGPSLRPRAMLKPTGSAGGGS ATAAAQAAIADAVHNRVA+APKPEERRRP+ SFADEIS+KSRW ER Q+G R R G GRG GG+ WE +KE G +GF + DA +K DR S R FG+G HVG A+S+QDST+ + TP+TTYVRQHGPPPRK A A TPAP Q + P V QQPTRSSAYSAS S+DQS D WGKSAE KWRSA Q + D PPEAPP DSPS QS SYVR GP GRE QADE +S S SR +HDAGGE TSRFGGSWGA EQ + +DK+SS G+ERT SGRWKEPA SLAPPP PTNTRWKEPKE+P+AGARRWK +E+GQ G GRWGRS E+ D+D SA Sbjct: 1 MAARGGRGGWAGDKTKRYMMVGTKDALPAGAKTGVVAPVPINTPSLRQEI---QGENAGTAAINRSGSGGGWGSAV-VSSASANSAAGQSVASGNGKGRRDGSGRQRGDDVFTRHFPDLRAGLEQAEKLDAVTKASSKVAPLRKPKSEPAKDQGPSLRPRAMLKPTGSAGGGSVATAAAQAAIADAVHNRVATAPKPEERRRPMASFADEISTKSRWAERPFQEGGSRVR-----GAGRGTGGT-WEMNKERGRDSGQGGRGFERAERGRR------DAFPEKEDRRSFRQNSNRSAMNSTRGRESIFGSGAHVGVASSTQDSTSKGSSATPSTTYVRQHGPPPRKAATPATTPAPAVQQEQPLVSQQPTRSSAYSASKPSNDQSHGDPWGKSAETLSKWRSASPSNPQPAMDAPPEAPPMPDSPSSQSGSYVRGDGP----GREGQADERVETSVSSSRSDHDAGGEPTSRFGGSWGAPEQGQNAMDKDSSAGIERTQSGRWKEPAGSLAPPPHPTNTRWKEPKEEPRAGARRWKAREDGQMGGGRWGRSAGEDADIDDSSA 543 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1236.1938.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1236.1938.1 >prot_L-elsbetiae_contig1236.1938.1 ID=prot_L-elsbetiae_contig1236.1938.1|Name=mRNA_L-elsbetiae_contig1236.1938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=832bp MSTRGGRGGWAGDKSKRFMMVGTKDAGGGAKTGVVAPVPINTPSLRQEIHback to top mRNA from alignment at L-elsbetiae_contig1236:13117..21661+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1236.1938.1 ID=mRNA_L-elsbetiae_contig1236.1938.1|Name=mRNA_L-elsbetiae_contig1236.1938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8545bp|location=Sequence derived from alignment at L-elsbetiae_contig1236:13117..21661+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1236:13117..21661+ >mRNA_L-elsbetiae_contig1236.1938.1 ID=mRNA_L-elsbetiae_contig1236.1938.1|Name=mRNA_L-elsbetiae_contig1236.1938.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4992bp|location=Sequence derived from alignment at L-elsbetiae_contig1236:13117..21661+ (Laminarionema elsbetiae ELsaHSoW15)back to top |