mRNA_L-elsbetiae_contig12356.1934.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12356.1934.1
Unique NamemRNA_L-elsbetiae_contig12356.1934.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12356.1934.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12356contigL-elsbetiae_contig12356:2292..2628 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSH3 domain
Ec32 orthologEc-20_000270.1
Exons1
Model size338
Cds size333
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.072073-UTR-L-elsbetiae_contig12356:2291..22951622815431.072073-UTR-L-elsbetiae_contig12356:2291..2295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12356 2292..2295 +
1691682894.9097106-UTR-L-elsbetiae_contig12356:2291..22951691682894.9097106-UTR-L-elsbetiae_contig12356:2291..2295Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12356 2292..2295 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815431.084718-CDS-L-elsbetiae_contig12356:2295..26281622815431.084718-CDS-L-elsbetiae_contig12356:2295..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12356 2296..2628 +
1691682894.9223793-CDS-L-elsbetiae_contig12356:2295..26281691682894.9223793-CDS-L-elsbetiae_contig12356:2295..2628Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12356 2296..2628 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12356.1934.1prot_L-elsbetiae_contig12356.1934.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12356 2296..2628 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12356.1934.1

>prot_L-elsbetiae_contig12356.1934.1 ID=prot_L-elsbetiae_contig12356.1934.1|Name=mRNA_L-elsbetiae_contig12356.1934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MPPPPIPQRNEAKTGSNPPPIPVRSPRRLPAGAVATAMSGPGSVPSPGIV
GQTGEGEEEEAKTGSNPPPIPVRSPRRLPAGAVATAMSGPGSLRSPGKVG
QTGEEEAAEEE
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mRNA from alignment at L-elsbetiae_contig12356:2292..2628+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12356.1934.1 ID=mRNA_L-elsbetiae_contig12356.1934.1|Name=mRNA_L-elsbetiae_contig12356.1934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=337bp|location=Sequence derived from alignment at L-elsbetiae_contig12356:2292..2628+ (Laminarionema elsbetiae ELsaHSoW15)
AACCATGCCGCCGCCACCAATACCTCAGCGGAATGAAGCGAAAACTGGGA
GCAATCCGCCACCGATACCTGTCCGTAGCCCCAGGCGCCTGCCTGCCGGT
GCGGTGGCTACAGCGATGTCAGGACCCGGAAGCGTGCCTTCACCGGGAAT
AGTCGGGCAGACGGGAGAAGGAGAGGAGGAGGAAGCGAAAACTGGGAGCA
ACCCGCCACCGATACCTGTCCGTAGCCCAAGGCGCCTGCCTGCCGGCGCG
GTGGCTACAGCGATGTCAGGACCCGGGAGCTTGCGTTCACCGGGAAAAGT
CGGGCAGACGGGAGAAGAAGAGGCGGCGGAGGAGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12356:2292..2628+

>mRNA_L-elsbetiae_contig12356.1934.1 ID=mRNA_L-elsbetiae_contig12356.1934.1|Name=mRNA_L-elsbetiae_contig12356.1934.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig12356:2292..2628+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCCGCCGCCACCAATACCTCAGCGGAATGAAGCGAAAACTGGGAGCAA
TCCGCCACCGATACCTGTCCGTAGCCCCAGGCGCCTGCCTGCCGGTGCGG
TGGCTACAGCGATGTCAGGACCCGGAAGCGTGCCTTCACCGGGAATAGTC
GGGCAGACGGGAGAAGGAGAGGAGGAGGAAGCGAAAACTGGGAGCAACCC
GCCACCGATACCTGTCCGTAGCCCAAGGCGCCTGCCTGCCGGCGCGGTGG
CTACAGCGATGTCAGGACCCGGGAGCTTGCGTTCACCGGGAAAAGTCGGG
CAGACGGGAGAAGAAGAGGCGGCGGAGGAGGAGATGCCGCCGCCACCAAT
ACCTCAGCGGAATGAAGCGAAAACTGGGAGCAATCCGCCACCGATACCTG
TCCGTAGCCCCAGGCGCCTGCCTGCCGGTGCGGTGGCTACAGCGATGTCA
GGACCCGGAAGCGTGCCTTCACCGGGAATAGTCGGGCAGACGGGAGAAGG
AGAGGAGGAGGAAGCGAAAACTGGGAGCAACCCGCCACCGATACCTGTCC
GTAGCCCAAGGCGCCTGCCTGCCGGCGCGGTGGCTACAGCGATGTCAGGA
CCCGGGAGCTTGCGTTCACCGGGAAAAGTCGGGCAGACGGGAGAAGAAGA
GGCGGCGGAGGAGGAG
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