mRNA_L-elsbetiae_contig12350.1933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12350.1933.1
Unique NamemRNA_L-elsbetiae_contig12350.1933.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12350.1933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12350contigL-elsbetiae_contig12350:2401..3744 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size574
Cds size573
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12350.1933.1prot_L-elsbetiae_contig12350.1933.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12350 2401..3744 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.9813237-CDS-L-elsbetiae_contig12350:2400..27581622815430.9813237-CDS-L-elsbetiae_contig12350:2400..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 2401..2758 +
1691682894.8789365-CDS-L-elsbetiae_contig12350:2400..27581691682894.8789365-CDS-L-elsbetiae_contig12350:2400..2758Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 2401..2758 +
1622815431.0301645-CDS-L-elsbetiae_contig12350:3266..33891622815431.0301645-CDS-L-elsbetiae_contig12350:3266..3389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 3267..3389 +
1691682894.889506-CDS-L-elsbetiae_contig12350:3266..33891691682894.889506-CDS-L-elsbetiae_contig12350:3266..3389Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 3267..3389 +
1622815431.0398846-CDS-L-elsbetiae_contig12350:3652..37441622815431.0398846-CDS-L-elsbetiae_contig12350:3652..3744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 3653..3744 +
1691682894.8991475-CDS-L-elsbetiae_contig12350:3652..37441691682894.8991475-CDS-L-elsbetiae_contig12350:3652..3744Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12350 3653..3744 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12350.1933.1

>prot_L-elsbetiae_contig12350.1933.1 ID=prot_L-elsbetiae_contig12350.1933.1|Name=mRNA_L-elsbetiae_contig12350.1933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=191bp
RKRAVEDSDDIWWALGLLGVASGMRAYTGHHGGESALGLLGVAGGMRAYT
GHHEYGQDWDSSPGQVMEEKAFGDCRASKRAKLDCLGAGGGGGGDVGGKA
KGQANKTMDTSSNNSNSSSGDKAAVGGRQRRAATPKSGISPEIDLWDLPD
LPKTSAATRRAPAAKGDTEKLPQKGRTDDEADHDFTCPRHV
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mRNA from alignment at L-elsbetiae_contig12350:2401..3744+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12350.1933.1 ID=mRNA_L-elsbetiae_contig12350.1933.1|Name=mRNA_L-elsbetiae_contig12350.1933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1344bp|location=Sequence derived from alignment at L-elsbetiae_contig12350:2401..3744+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCGTGCAGTAGAAGACAGCGACGATATTTGGTGGGCGCTTGGCCT
ACTGGGCGTAGCTAGTGGCATGAGGGCTTACACCGGACACCACGGCGGTG
AATCGGCGCTCGGCCTACTGGGCGTAGCTGGTGGCATGAGGGCATACACC
GGACACCACGAGTACGGACAGGACTGGGATTCTTCCCCCGGGCAGGTCAT
GGAGGAGAAGGCTTTCGGCGATTGCCGCGCGAGTAAACGGGCGAAGCTCG
ACTGCCTCGGAGCAGGAGGAGGAGGTGGAGGAGATGTAGGAGGAAAAGCC
AAAGGACAGGCCAACAAAACTATGGACACCAGCAGCAACAACAGCAACAG
CAGCAGCGGTGAGTGCGAAATGTAGGATAGAGCCCGCCGTGGAACAGACG
GCGAAAGTGCCGGGGCTTGTGCAACAAGTAGTGGAGGTTGGGCATTGTTT
GTGTCTCGATATGTCACACTTGATGCCGTTACCATACCGTAGTCTCAACC
CAGGTACCGGCTGTGCATAATTCGCCGCCGGTCTATAGTGCGATCTACGG
GCGCACATCGGGTCATATGAGAAGCTCATCCCCGTCCATAGACGACCCAG
CGGGTTCAAGTTACGTGGGACGTCCTGCAAGCGAAGTGCGGTGTCGTACA
AAAATGACCGTGCGTCCATCGTGCTCACACTCTCGCTGGGTAGGGTCGTC
TCCCGAACGCCTGCATGTGGTTTTTCTCTCATAGCGTGGGTAGGAATGCA
AAGTGTGCGGTCTCACCATATACCACGGCATGCATGCGTGGTCAATGAGT
GCATGCCCCCTGCCCTCCGCTCTCCACCCCTGAACCTCTCGTGCGGCGCG
CTGTGCTGTGCTATAGGAGACAAGGCGGCGGTGGGCGGCAGGCAGAGGCG
AGCTGCCACCCCGAAATCTGGGATTTCACCGGAGATCGACCTGTGGGACC
TCCCCGACCTGCCGAAGACGAGCGCGGCGACGAGAAGGGGTGAGTACAGA
GGTCTTGTGCGGTTTTCGCTTTCCTCGTGCTCCTCGCCGCGAACGTCTCG
ACCGTGGCGAGTGAGACCTCGAGAGCTCTCGTGGAGAAGGTTTGCGCAGC
CACCGCCCCTTTTCCATAGCCAGTACGTAAGAGCTCTCGTGAAAGGTTTG
CGTGACCACCGCGCCTTCCCTGCTTGCCCTGCCCTGCCCATATTTTTCCT
CTCCCCTCCTCACCCTGCCCTCTCTCCCGTTGGTGCCTCTCGGCGGCCTC
AGCCCCTGCGGCGAAAGGGGACACCGAGAAGCTTCCGCAGAAGGGGCGGA
CCGACGACGAGGCCGACCACGACTTCACCTGCCCTCGGCACGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12350:2401..3744+

>mRNA_L-elsbetiae_contig12350.1933.1 ID=mRNA_L-elsbetiae_contig12350.1933.1|Name=mRNA_L-elsbetiae_contig12350.1933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1146bp|location=Sequence derived from alignment at L-elsbetiae_contig12350:2401..3744+ (Laminarionema elsbetiae ELsaHSoW15)
CGCAAGCGTGCAGTAGAAGACAGCGACGATATTTGGTGGGCGCTTGGCCT
ACTGGGCGTAGCTAGTGGCATGAGGGCTTACACCGGACACCACGGCGGTG
AATCGGCGCTCGGCCTACTGGGCGTAGCTGGTGGCATGAGGGCATACACC
GGACACCACGAGTACGGACAGGACTGGGATTCTTCCCCCGGGCAGGTCAT
GGAGGAGAAGGCTTTCGGCGATTGCCGCGCGAGTAAACGGGCGAAGCTCG
ACTGCCTCGGAGCAGGAGGAGGAGGTGGAGGAGATGTAGGAGGAAAAGCC
AAAGGACAGGCCAACAAAACTATGGACACCAGCAGCAACAACAGCAACAG
CAGCAGCGCGCAAGCGTGCAGTAGAAGACAGCGACGATATTTGGTGGGCG
CTTGGCCTACTGGGCGTAGCTAGTGGCATGAGGGCTTACACCGGACACCA
CGGCGGTGAATCGGCGCTCGGCCTACTGGGCGTAGCTGGTGGCATGAGGG
CATACACCGGACACCACGAGTACGGACAGGACTGGGATTCTTCCCCCGGG
CAGGTCATGGAGGAGAAGGCTTTCGGCGATTGCCGCGCGAGTAAACGGGC
GAAGCTCGACTGCCTCGGAGCAGGAGGAGGAGGTGGAGGAGATGTAGGAG
GAAAAGCCAAAGGACAGGCCAACAAAACTATGGACACCAGCAGCAACAAC
AGCAACAGCAGCAGCGGAGACAAGGCGGCGGTGGGCGGCAGGCAGAGGCG
AGCTGCCACCCCGAAATCTGGGATTTCACCGGAGATCGACCTGTGGGACC
TCCCCGACCTGCCGAAGACGAGCGCGGCGACGAGAAGGGGAGACAAGGCG
GCGGTGGGCGGCAGGCAGAGGCGAGCTGCCACCCCGAAATCTGGGATTTC
ACCGGAGATCGACCTGTGGGACCTCCCCGACCTGCCGAAGACGAGCGCGG
CGACGAGAAGGGCCCCTGCGGCGAAAGGGGACACCGAGAAGCTTCCGCAG
AAGGGGCGGACCGACGACGAGGCCGACCACGACTTCACCTGCCCTCGGCA
CGTGCCCCTGCGGCGAAAGGGGACACCGAGAAGCTTCCGCAGAAGGGGCG
GACCGACGACGAGGCCGACCACGACTTCACCTGCCCTCGGCACGTG
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