mRNA_L-elsbetiae_contig12349.1932.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12349.1932.1
Unique NamemRNA_L-elsbetiae_contig12349.1932.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12349.1932.1 vs. uniprot
Match: D8LES9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LES9_ECTSI)

HSP 1 Score: 224 bits (571), Expect = 4.700e-66
Identity = 107/164 (65.24%), Postives = 130/164 (79.27%), Query Frame = 3 
Query:    3 TAMYYRARLGYYGFLTLMVGLVQIALGAYVNQLFGWGQLDAPVVAVTFFITRPELSVFVGTCQTLYGLLMIYRSNTSGVGPGTGNKDMGLFMFQAAGWSVFVISLGAQVLGQ-TWPAGGGPALFVRNVLGFTLFPIYLDVLAHTTPENVTPQMFSTVKDISSGV 491
            +A YYR+RLGYYGFL+LMVG +Q+ALG++V  +FGWGQL +PVV+  FFI  PELS+ VG CQ L+G  ++YRS T GVGP TGNKD G+F FQ   WSVF+IS+GAQVLGQ +  A   PALF+RNV+GF LFPIYLDVL+HTTPENVTP MFS  K + SG+
Sbjct:  189 SATYYRSRLGYYGFLSLMVGALQVALGSFVEGMFGWGQLPSPVVSGPFFILWPELSITVGVCQVLFGFYILYRSTTPGVGPSTGNKDAGMFKFQVVAWSVFLISMGAQVLGQVSLAASAMPALFIRNVIGFALFPIYLDVLSHTTPENVTPDMFSMSKTVGSGI 352
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BLAST of mRNA_L-elsbetiae_contig12349.1932.1 vs. uniprot
Match: A0A836CMW6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMW6_9STRA)

HSP 1 Score: 84.3 bits (207), Expect = 2.860e-14
Identity = 59/152 (38.82%), Postives = 77/152 (50.66%), Query Frame = 3 
Query:    3 TAMYYRARLGYYGFLTLMVGLVQIALGAYVNQLFGWGQLDAPVVAVTFFITRPELSVFVGTCQTLYGLLMIYRSNTSGVGPGTGNKDMGLFMFQAAGW-SVF--VISLGAQVLGQTWPA---GGGPALFVRNVLGFTLFPIYLDVLAHTTPE 440
            T  YY +R  YYGFLTL+ G+VQ+ALGAYV   FG  +L  P+ A  F +T  + S+ +G      G L++ RS  S        KD  +    A  W SVF  V  L  QVL Q   A     G A  V   L   +FP+YLD+ + + PE
Sbjct:  177 TGAYYASRQTYYGFLTLLAGVVQLALGAYVQDNFGSDRLLEPIAAGPFTVTYSQASIAMGVLVMFQGALLMARSYMS--------KDSKVATGAAFDWWSVFAYVTVLAVQVLTQVAVAPAPAAGRASTVFETLALAVFPVYLDIKSRSAPE 320
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BLAST of mRNA_L-elsbetiae_contig12349.1932.1 vs. uniprot
Match: A0A7S1GQW8_CYCTE (Hypothetical protein n=1 Tax=Cyclophora tenuis TaxID=216820 RepID=A0A7S1GQW8_CYCTE)

HSP 1 Score: 64.3 bits (155), Expect = 1.680e-8
Identity = 53/141 (37.59%), Postives = 67/141 (47.52%), Query Frame = 3 
Query:   24 RLGYYGFLTLMVGLVQIALGAYVNQLFGWGQLDAPVVAVTFFITRPELSVFVGTCQTLYGLLMIYRS-NTSGVGPGTGNKDMGLFMFQAAGWSVFVISLGAQV--LGQTWPAGGGPALFVRNVLGFTLFPIYLDVLAHTTP 437
            RLG+Y FL ++VG VQ+ LGAY    FG G L   V    F I+ PE+SVFVG    L G+    RS    G      +   GL +FQ   W   V+ +  Q+  L     AG  P+      LG  + P YLD    TTP
Sbjct:    2 RLGFYCFLIILVGFVQLLLGAYCLNNFGSGPLKPAVSVAMFTISFPEISVFVGLVYILNGMYGFVRSLGVVGAVEYDHSFQYGL-IFQY--WCTLVLMILVQISYLPGGAMAGAAPSRACLT-LGAHVLPAYLDFKMRTTP 138
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12349.1932.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LES9_ECTSI4.700e-6665.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CMW6_9STRA2.860e-1438.82Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1GQW8_CYCTE1.680e-837.59Hypothetical protein n=1 Tax=Cyclophora tenuis Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12349contigL-elsbetiae_contig12349:1690..4658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score224.2
Seed ortholog evalue4.5e-56
Seed eggNOG ortholog2880.D8LES9
Hectar predicted targeting categorysignal peptide
EggNOG OGs2E0GM@1,2S7X1@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1319
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12349.1932.1prot_L-elsbetiae_contig12349.1932.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12349 2515..4650 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.8683038-UTR-L-elsbetiae_contig12349:1689..25141622815430.8683038-UTR-L-elsbetiae_contig12349:1689..2514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12349 1690..2514 -
1691682894.8082256-UTR-L-elsbetiae_contig12349:1689..25141691682894.8082256-UTR-L-elsbetiae_contig12349:1689..2514Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12349 1690..2514 -
1622815430.940238-UTR-L-elsbetiae_contig12349:4650..46581622815430.940238-UTR-L-elsbetiae_contig12349:4650..4658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12349 4651..4658 -
1691682894.8677084-UTR-L-elsbetiae_contig12349:4650..46581691682894.8677084-UTR-L-elsbetiae_contig12349:4650..4658Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12349 4651..4658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.8836684-CDS-L-elsbetiae_contig12349:2514..25911622815430.8836684-CDS-L-elsbetiae_contig12349:2514..2591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 2515..2591 -
1691682894.817623-CDS-L-elsbetiae_contig12349:2514..25911691682894.817623-CDS-L-elsbetiae_contig12349:2514..2591Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 2515..2591 -
1622815430.8962944-CDS-L-elsbetiae_contig12349:2896..31221622815430.8962944-CDS-L-elsbetiae_contig12349:2896..3122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 2897..3122 -
1691682894.8265305-CDS-L-elsbetiae_contig12349:2896..31221691682894.8265305-CDS-L-elsbetiae_contig12349:2896..3122Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 2897..3122 -
1622815430.909291-CDS-L-elsbetiae_contig12349:4122..42321622815430.909291-CDS-L-elsbetiae_contig12349:4122..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 4123..4232 -
1691682894.8371186-CDS-L-elsbetiae_contig12349:4122..42321691682894.8371186-CDS-L-elsbetiae_contig12349:4122..4232Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 4123..4232 -
1622815430.9262242-CDS-L-elsbetiae_contig12349:4577..46501622815430.9262242-CDS-L-elsbetiae_contig12349:4577..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 4578..4650 -
1691682894.8466225-CDS-L-elsbetiae_contig12349:4577..46501691682894.8466225-CDS-L-elsbetiae_contig12349:4577..4650Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12349 4578..4650 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12349.1932.1

>prot_L-elsbetiae_contig12349.1932.1 ID=prot_L-elsbetiae_contig12349.1932.1|Name=mRNA_L-elsbetiae_contig12349.1932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MYYRARLGYYGFLTLMVGLVQIALGAYVNQLFGWGQLDAPVVAVTFFITR
PELSVFVGTCQTLYGLLMIYRSNTSGVGPGTGNKDMGLFMFQAAGWSVFV
ISLGAQVLGQTWPAGGGPALFVRNVLGFTLFPIYLDVLAHTTPENVTPQM
FSTVKDISSGV*
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mRNA from alignment at L-elsbetiae_contig12349:1690..4658-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12349.1932.1 ID=mRNA_L-elsbetiae_contig12349.1932.1|Name=mRNA_L-elsbetiae_contig12349.1932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2969bp|location=Sequence derived from alignment at L-elsbetiae_contig12349:1690..4658- (Laminarionema elsbetiae ELsaHSoW15)
ACACCGCAATGTACTACCGCGCCCGCCTCGGCTACTACGGGTTCCTTACG
CTCATGGTCGGCTTAGTCCAGATCGCTCTTGGTAAGCGAGGGTGCACGTC
GCACCACACAGAGATATCGCGTGGCTATTGCATCGCATCGCCATTGCAGC
GAGTTGTATCTTGACACAAGCGGCACTTCTAGCGTTCGTTTGACGCGTTA
TTCATAGCTATAGACCAACAAAAAGTGGCTGCCGTTGACGTTGCCGTTTG
GTGACAAAAGCATCCGCCGAAATGCACACACTTTGCAATATAAATACAGG
TTAGCCCCTCCATGGTTCGAGAACATCGTATTGCAGGTTTGACCAGCAAT
TACCCACTCTGTCTGTCTCTCTCTGTGTCTCGCTCTTGTCTCTCTCTCTT
TGTGCCTCGCTCTTGTCTTTGTCTAGGCGCGTACGTGAACCAACTGTTTG
GATGGGGCCAGCTGGACGCCCCCGTGGTGGCAGTAACCTTCTTCATTACG
CGCCCTGAGCTCAGCGTCTTCGTCGGAACTTGCCAGGTAATAAGCTGCAA
GCGGTGGCTTCGGAGACTTGACATAATTCGTGGCATTTTTTTGTGCATGC
TTAACATACGCTGCACGGGGATGCCGCGGGCAGGAGTCGCTCTATTAGTT
ATTCGTGCGCCTTTTGTGCGCGAGAGCTGTTCAAAACCACAGAGAGAACA
AGTGGGTCGAAGCAGCTACCGTAGACTCCTTTGAGTTACCCCAGTAGTTT
TTGGGTCAAAAAGATGCCCCGGGGTGGATCTCAAAGGGAGGGGGGGCGAT
CTTTTCAAAAACAAAAAAATCACCCCGGGGGGAAAAAGCCGGGGGGGCGA
ACTCTCTTTTTCGCTCTCTTTTTCTAGGCATGGCTATAGTTGTTAGGTGT
GTGGCTGGACTGCTCAAGCCTCTAATCTACGAGCGCGCGTCCCGTTGTTG
TGGTTTATTCTGCTTTTTTCAGTGCTGACTGTTTAAGTACGGTACCTGTT
CGCGAGCAATGGACGAGTTCTGGGTACCGGTACTGTGGCCTTTTGGTATA
AAACGTAATATAGGTTTGCGCAGAGACGTTGATCTGTTGCTGCAAATTCA
CATGACATAATATGAATACGGGAGACCTTTGAACGTGCGATTGTCGGATG
GCAAGCGAAAGACGAATCCAACAACACCAGCAACAACATGTTACCACGCA
ACAACGAGCTGCCGGGATAAATGTCGTCACGCCCCGGGGCTCCCCCCCAA
AAGCGTAAAAAACAAAAACGCCCCGCGGGGGTAACTCAAAGGTAGAGGGG
CGAAAAAAAATAAAAATAAAATGCATTTCACCCCGGGGCTAACTCAACGT
TTTTGTGATCGCGAAGCGGTTTAACCCTGGTAGGGGGTGCTAACCCGGTC
GGGGGGGTAACTCAAAGGGGTTTACGGTATGTACAAGCTTGCACAAGCTA
AGCCCTATTTAGCCTTATACCTAACCTCGTTCCTCCCCTTGTCTTGAATC
ACCCATCATCCCTCTTGGGGCTTGCGTAAAAAACAGACCCTGTATGGCCT
CCTGATGATCTACCGCTCGAACACCTCCGGAGTGGGCCCGGGGACCGGCA
ACAAGGACATGGGGCTGTTCATGTTCCAGGCGGCCGGGTGGTCTGTGTTC
GTCATCAGCCTGGGGGCCCAGGTGCTCGGCCAGACGTGGCCTGCGGGTGG
CGGCCCCGCACTCTTCGTCAGGAACGTCCTCGGATTCACCCTGTTCCCCA
TTTACCTCGACGGTGAGCGTCGATATAGTTGCTGCGGCCATGGTGGCACT
GCTGTGTATGGGGGTCCCTCAGCAGTAGAGCCGGCCATTTGGCTCTTTTT
TTCGCCCAACGCCCAAAATGCTTCGATTTTGTTTCGTTGTCGTGGTGCGC
CCTCGGCAGCACCAGCCTCTGCAGCGATCAAGCCCCGGCGTGTGCCTAGT
CTAAGTCGCCGCAAAGACTTTCTCCTTTTTTGTCGCGGAGCACCACCTTT
TTACCGACCTCAACCCCCACCCGCACGGTCCTCCGCCCCCTTTCCGGATT
GGTTCTCCCTGCAACAGTGCTGGCGCACACGACCCCCGAGAACGTGACCC
CGCAAATGTTCAGCACCGTCAAGGACATCTCCTCGGGGGTCTAAACACCA
CCAACGTCTTGACATCACAACGACGACGATAGGCGACGAATGCGGTTCAG
GTTAGGGTTGCTTGGGTCTTCAAAGAGCGGCGTGGCCGAAGGCTGTGTGC
CCTCGAAAGATTGCCAGGGAGCTGGGGAGTGAAGGGTGGCTTTTTTTTTC
TCGATCTACCGCGACGGGTGACGGAGGTGCGTTGGGAGCCCCCACCCCAC
GTGTCGCCTGTCCTTTCGGGCACACAGCGGGAGGGCAACCAAAGCAAACT
CGTCGTGTTGAGCAAGCCAAAAGCGGCGGGCTAGGCTAGCACCACTGGGC
GGGGGTCGCGATTGGCGACAAAGCCCACGTTGTCCAATGACAGCAGAATA
CTTATTAGCGAAGGGCAATGCACAGCGAAATTCGCCTCCATTGCTTGCTG
GTGTCATAGCAGGCACTAATCTATTAGGGGATAGGTATGTACGTATGCTT
CAGACAACTTCGCGCCCTGCAAGGCGGTGGGGAAAGGAGGGTTAGATACC
GTTGGTTTGGGTGTTGGGGGGGCATATTGCGTGAGCATGGCCTAGGCCGT
CGTCGGATGGGAGGTTTTCAGACTCTAACGCAGCACGTCTTAAATGTATC
TTGTGTGTTTAGAGTTAGATGGTTTGAGCCCCAATTGTTCACTCTCTGCG
TGTCTGTGCTGTTTTATTTTTGACGGAGAGGGCGATGGAACGGTTGCAGG
GGGAACGAGTCCCAAGGTATGTGTATTCTATCATTGTTGTTCTATCATTG
TTGTGAAGAGAGAGTTCGGGCGTGGGCGGTGTGTATTTTGCCGCTGAATT
TTTGCTGACGGGAGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12349:1690..4658-

>mRNA_L-elsbetiae_contig12349.1932.1 ID=mRNA_L-elsbetiae_contig12349.1932.1|Name=mRNA_L-elsbetiae_contig12349.1932.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig12349:1690..4658- (Laminarionema elsbetiae ELsaHSoW15)
ATGTACTACCGCGCCCGCCTCGGCTACTACGGGTTCCTTACGCTCATGGT
CGGCTTAGTCCAGATCGCTCTTGATGTACTACCGCGCCCGCCTCGGCTAC
TACGGGTTCCTTACGCTCATGGTCGGCTTAGTCCAGATCGCTCTTGGCGC
GTACGTGAACCAACTGTTTGGATGGGGCCAGCTGGACGCCCCCGTGGTGG
CAGTAACCTTCTTCATTACGCGCCCTGAGCTCAGCGTCTTCGTCGGAACT
TGCCAGGCGCGTACGTGAACCAACTGTTTGGATGGGGCCAGCTGGACGCC
CCCGTGGTGGCAGTAACCTTCTTCATTACGCGCCCTGAGCTCAGCGTCTT
CGTCGGAACTTGCCAGACCCTGTATGGCCTCCTGATGATCTACCGCTCGA
ACACCTCCGGAGTGGGCCCGGGGACCGGCAACAAGGACATGGGGCTGTTC
ATGTTCCAGGCGGCCGGGTGGTCTGTGTTCGTCATCAGCCTGGGGGCCCA
GGTGCTCGGCCAGACGTGGCCTGCGGGTGGCGGCCCCGCACTCTTCGTCA
GGAACGTCCTCGGATTCACCCTGTTCCCCATTTACCTCGACGACCCTGTA
TGGCCTCCTGATGATCTACCGCTCGAACACCTCCGGAGTGGGCCCGGGGA
CCGGCAACAAGGACATGGGGCTGTTCATGTTCCAGGCGGCCGGGTGGTCT
GTGTTCGTCATCAGCCTGGGGGCCCAGGTGCTCGGCCAGACGTGGCCTGC
GGGTGGCGGCCCCGCACTCTTCGTCAGGAACGTCCTCGGATTCACCCTGT
TCCCCATTTACCTCGACGTGCTGGCGCACACGACCCCCGAGAACGTGACC
CCGCAAATGTTCAGCACCGTCAAGGACATCTCCTCGGGGGTCTAATGCTG
GCGCACACGACCCCCGAGAACGTGACCCCGCAAATGTTCAGCACCGTCAA
GGACATCTCCTCGGGGGTCTAA
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