mRNA_L-elsbetiae_contig12345.1931.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12345.1931.1
Unique NamemRNA_L-elsbetiae_contig12345.1931.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: A0A6H5KZA6_9PHAE (UBC core domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZA6_9PHAE)

HSP 1 Score: 289 bits (739), Expect = 1.010e-92
Identity = 131/145 (90.34%), Postives = 139/145 (95.86%), Query Frame = 3 
Query:  129 ERYSWMPSLRRSNPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            E+Y+WMPSL RS PSRECIRRVRNDI+S MRDP+PGLFV PDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPH+PPRVRL+TTGGG VRFNPNLYANGKVCLSILGTW+GP W+PVHSISSVLLSIQSLMNEKPYHNEPG
Sbjct:  120 EKYNWMPSLCRSKPSRECIRRVRNDIRSAMRDPIPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPG 264
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: D7FWD9_ECTSI (Ubiquitin-conjugating enzyme, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWD9_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 2.670e-75
Identity = 108/115 (93.91%), Postives = 112/115 (97.39%), Query Frame = 3 
Query:  219 RDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            RDPVPGLFV PDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPH+PPRVRL+TTGGG VRFNPNLYANGKVCLSILGTW+GP W+PVHSISSVLLSIQSLMNEKPYHNEPG
Sbjct:    8 RDPVPGLFVYPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHSPPRVRLMTTGGGTVRFNPNLYANGKVCLSILGTWNGPRWTPVHSISSVLLSIQSLMNEKPYHNEPG 122
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: V3ZYE3_LOTGI (UBC core domain-containing protein n=1 Tax=Lottia gigantea TaxID=225164 RepID=V3ZYE3_LOTGI)

HSP 1 Score: 220 bits (561), Expect = 8.130e-68
Identity = 94/145 (64.83%), Postives = 120/145 (82.76%), Query Frame = 3 
Query:  141 WMPSLR----RSNPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            W PSL     +   S +CI R++ DI ++ ++P PG+F+ PD+D +T++H+L+TGPFDTPYEGGFFYF++ CP DYP  PPRV+L+TTG G+VRFNPNLY NGKVCLSILGTWSGP+WSP  S+S++L+SIQSLMNEKPYHNEPG
Sbjct:   30 WDPSLSGDWDKVKASPQCIMRIKRDIMTIYKEPPPGMFIVPDKDDLTIIHSLITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGDGRVRFNPNLYKNGKVCLSILGTWSGPAWSPAQSLSTILMSIQSLMNEKPYHNEPG 174
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: A0A7S2RPK1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RPK1_9STRA)

HSP 1 Score: 223 bits (568), Expect = 8.870e-68
Identity = 97/132 (73.48%), Postives = 116/132 (87.88%), Query Frame = 3 
Query:  168 PSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            P+ EC +R+R D++S+  DP+P +F   DE  +TV+HAL+TGPF+TPYEGGFF+FVL+CPDDYP+ PP+V+L+TTGGG VRFNPNLYANGKVCLSILGTWSGP WSPV S+SSVLLSIQSLMN KPYHNEPG
Sbjct:   78 PTVECRKRIRRDMRSLQEDPLPSIFCVRDETYLTVLHALITGPFETPYEGGFFWFVLNCPDDYPNRPPKVKLMTTGGGAVRFNPNLYANGKVCLSILGTWSGPGWSPVQSLSSVLLSIQSLMNPKPYHNEPG 209
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: A0A7I8W272_9ANNE (DgyrCDS11075 n=1 Tax=Dimorphilus gyrociliatus TaxID=2664684 RepID=A0A7I8W272_9ANNE)

HSP 1 Score: 220 bits (561), Expect = 1.030e-67
Identity = 94/146 (64.38%), Postives = 119/146 (81.51%), Query Frame = 3 
Query:  138 SWMPSLR----RSNPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            SW PS         P+ +C+ R++ DI  + ++P PG+F+ PD++ +T +HAL+TGPFDTPYEGGFFYF++ CP DYP  PPRV+L+TTGGG+VRFNPNLY NGKVCLSILGTWSGP+W+P  +ISSVL+SIQSLMN+KPYHNEPG
Sbjct:   31 SWDPSNSPDWDNEKPTEQCVARIKRDILYICKEPPPGMFIVPDQENLTKIHALITGPFDTPYEGGFFYFLIRCPSDYPIRPPRVKLITTGGGRVRFNPNLYKNGKVCLSILGTWSGPAWTPAQTISSVLISIQSLMNDKPYHNEPG 176
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: UPI001454DF6F (ubiquitin-conjugating enzyme E2 Z-like isoform X1 n=2 Tax=Cryptotermes secundus TaxID=105785 RepID=UPI001454DF6F)

HSP 1 Score: 216 bits (551), Expect = 1.130e-67
Identity = 95/144 (65.97%), Postives = 116/144 (80.56%), Query Frame = 3 
Query:  141 WMP---SLRRSNPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            W P   S  R   S +C+ R++ D+ S+  +P PGLFV PDED +T++HAL+TG FDTPYEGGFFYF++ CP DYP  PPRV+L+TTGGG VRFNPN+Y  GK+CLSILGTW+GPSWSP  S+SSVL+SIQSL+NEKPYHNEPG
Sbjct:   21 WDPVTNSDEREVASHQCLLRIKRDLMSIYNEPPPGLFVVPDEDDMTIIHALITGSFDTPYEGGFFYFLIRCPSDYPIRPPRVKLMTTGGGTVRFNPNMYKCGKICLSILGTWTGPSWSPAQSLSSVLISIQSLLNEKPYHNEPG 164
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: UPI001B88CC4A (ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B88CC4A)

HSP 1 Score: 218 bits (556), Expect = 3.850e-67
Identity = 92/132 (69.70%), Postives = 114/132 (86.36%), Query Frame = 3 
Query:  168 PSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            P ++CI R++ DI S+  +P PG+ + PD+D +T +HAL+TGPFDTPYEGGFFYF++ CP DYP +PPRVRL+TTG G+VRFNPNLY NGKVCLSI+GTWSGP+WSP  S+S+VL+SIQSLMNEKPYHNEPG
Sbjct:   40 PKQQCILRIKRDIMSIYSEPPPGMCIVPDKDDITKIHALITGPFDTPYEGGFFYFLIRCPPDYPIHPPRVRLMTTGDGRVRFNPNLYKNGKVCLSIIGTWSGPAWSPAQSLSTVLISIQSLMNEKPYHNEPG 171
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: A0A7R9DEJ7_TIMCR (Hypothetical protein (Fragment) n=1 Tax=Timema cristinae TaxID=61476 RepID=A0A7R9DEJ7_TIMCR)

HSP 1 Score: 214 bits (545), Expect = 4.190e-67
Identity = 93/135 (68.89%), Postives = 112/135 (82.96%), Query Frame = 3 
Query:  159 RSNPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            +  PS +CI R++ D+ S+  +P PGLFV PDE  +TV+HAL+TG FDTPYEGGFFY ++ CP DYP  PPRV+L+TTGGG VRFNPNLY  GK+CLSILGTW+GPSWSP  S+SSVL+SIQSL+NEKPYHNEPG
Sbjct:   36 KETPSPQCILRIKRDMMSIYNEPPPGLFVVPDERDMTVIHALITGSFDTPYEGGFFYLLIRCPPDYPIRPPRVKLMTTGGGTVRFNPNLYKCGKICLSILGTWTGPSWSPAQSLSSVLISIQSLLNEKPYHNEPG 170
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: A0A3M6TLH5_POCDA (UBC core domain-containing protein n=5 Tax=Scleractinia TaxID=6125 RepID=A0A3M6TLH5_POCDA)

HSP 1 Score: 216 bits (549), Expect = 3.140e-66
Identity = 90/129 (69.77%), Postives = 112/129 (86.82%), Query Frame = 3 
Query:  177 ECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            +C+ R++ DI S+  +P PG+ + PD++ +T +HAL+TGPFDTPYEGGFFYF++ CP DYP  PPRV+L+TTGGG+VRFNPNLY NGKVCLSILGTWSGP+WSP  S+SSVL+SIQSL+NEKPYHNEPG
Sbjct:   32 QCVLRIKRDIMSIYNEPPPGMCIVPDKEDITKIHALITGPFDTPYEGGFFYFLIRCPPDYPIRPPRVKLMTTGGGQVRFNPNLYRNGKVCLSILGTWSGPAWSPAQSLSSVLISIQSLLNEKPYHNEPG 160
[Close]
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Match: R7U692_CAPTE (UBC core domain-containing protein n=1 Tax=Capitella teleta TaxID=283909 RepID=R7U692_CAPTE)

HSP 1 Score: 216 bits (550), Expect = 4.430e-66
Identity = 93/145 (64.14%), Postives = 118/145 (81.38%), Query Frame = 3 
Query:  141 WMPSLRRS----NPSRECIRRVRNDIKSVMRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHNPPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLLSIQSLMNEKPYHNEPG 563
            W P L +      P+ +C  R++ DI ++ +DP PG+ +CPD + +T++HAL+TGPFDTPYEGG+FYF++ CP DYP + PRVRL+TTG G+VRFNPNLY NGKVCLSILGTW+GP+WSP  SISSVL+SIQSL+NEKPYHNEPG
Sbjct:   38 WDPVLSQDWDLVKPTEQCFLRIKRDIMNIYKDPPPGMCICPDNEDLTLIHALITGPFDTPYEGGYFYFLIRCPPDYPIHAPRVRLMTTGEGRVRFNPNLYRNGKVCLSILGTWTGPAWSPAGSISSVLISIQSLLNEKPYHNEPG 182
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12345.1931.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZA6_9PHAE1.010e-9290.34UBC core domain-containing protein n=1 Tax=Ectocar... [more]
D7FWD9_ECTSI2.670e-7593.91Ubiquitin-conjugating enzyme, putative n=1 Tax=Ect... [more]
V3ZYE3_LOTGI8.130e-6864.83UBC core domain-containing protein n=1 Tax=Lottia ... [more]
A0A7S2RPK1_9STRA8.870e-6873.48Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7I8W272_9ANNE1.030e-6764.38DgyrCDS11075 n=1 Tax=Dimorphilus gyrociliatus TaxI... [more]
UPI001454DF6F1.130e-6765.97ubiquitin-conjugating enzyme E2 Z-like isoform X1 ... [more]
UPI001B88CC4A3.850e-6769.70ubiquitin-conjugating enzyme E2 Z-like n=1 Tax=Gig... [more]
A0A7R9DEJ7_TIMCR4.190e-6768.89Hypothetical protein (Fragment) n=1 Tax=Timema cri... [more]
A0A3M6TLH5_POCDA3.140e-6669.77UBC core domain-containing protein n=5 Tax=Sclerac... [more]
R7U692_CAPTE4.430e-6664.14UBC core domain-containing protein n=1 Tax=Capitel... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12345contigL-elsbetiae_contig12345:1183..3862 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score240.7
Seed ortholog evalue4.8e-61
Seed eggNOG ortholog2880.D7FWD9
Preferred nameUBE2Z
KEGG koko:K10585
KEGG Pathwayko04120,map04120
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006464,GO:0006508,GO:0006511,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009057,GO:0009987,GO:0010941,GO:0010942,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0019899,GO:0019941,GO:0030163,GO:0031625,GO:0031974,GO:0031981,GO:0032446,GO:0036211,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044389,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0051603,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065007,GO:0070013,GO:0070647,GO:0071704,GO:0140096,GO:1901564,GO:1901565,GO:1901575
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
EC2.3.2.23
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121
Ec32 ortholog descriptionUbiquitin-conjugating enzyme/RWD-like
Ec32 orthologEc-09_004050.1
Exons5
Model size762
Cds size501
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.7647963-UTR-L-elsbetiae_contig12345:1182..13781622815430.7647963-UTR-L-elsbetiae_contig12345:1182..1378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12345 1183..1378 -
1691682894.7380533-UTR-L-elsbetiae_contig12345:1182..13781691682894.7380533-UTR-L-elsbetiae_contig12345:1182..1378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12345 1183..1378 -
1622815430.830741-UTR-L-elsbetiae_contig12345:3797..38621622815430.830741-UTR-L-elsbetiae_contig12345:3797..3862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12345 3798..3862 -
1691682894.7985106-UTR-L-elsbetiae_contig12345:3797..38621691682894.7985106-UTR-L-elsbetiae_contig12345:3797..3862Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12345 3798..3862 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.7746162-CDS-L-elsbetiae_contig12345:1378..14931622815430.7746162-CDS-L-elsbetiae_contig12345:1378..1493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 1379..1493 -
1691682894.7514126-CDS-L-elsbetiae_contig12345:1378..14931691682894.7514126-CDS-L-elsbetiae_contig12345:1378..1493Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 1379..1493 -
1622815430.7839024-CDS-L-elsbetiae_contig12345:2235..23681622815430.7839024-CDS-L-elsbetiae_contig12345:2235..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 2236..2368 -
1691682894.7601247-CDS-L-elsbetiae_contig12345:2235..23681691682894.7601247-CDS-L-elsbetiae_contig12345:2235..2368Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 2236..2368 -
1622815430.7960198-CDS-L-elsbetiae_contig12345:3070..31681622815430.7960198-CDS-L-elsbetiae_contig12345:3070..3168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3071..3168 -
1691682894.7686346-CDS-L-elsbetiae_contig12345:3070..31681691682894.7686346-CDS-L-elsbetiae_contig12345:3070..3168Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3071..3168 -
1622815430.8074179-CDS-L-elsbetiae_contig12345:3512..35991622815430.8074179-CDS-L-elsbetiae_contig12345:3512..3599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3513..3599 -
1691682894.7779906-CDS-L-elsbetiae_contig12345:3512..35991691682894.7779906-CDS-L-elsbetiae_contig12345:3512..3599Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3513..3599 -
1622815430.8189995-CDS-L-elsbetiae_contig12345:3729..37971622815430.8189995-CDS-L-elsbetiae_contig12345:3729..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3730..3797 -
1691682894.7875776-CDS-L-elsbetiae_contig12345:3729..37971691682894.7875776-CDS-L-elsbetiae_contig12345:3729..3797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12345 3730..3797 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12345.1931.1prot_L-elsbetiae_contig12345.1931.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12345 1379..3797 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12345.1931.1

>prot_L-elsbetiae_contig12345.1931.1 ID=prot_L-elsbetiae_contig12345.1931.1|Name=mRNA_L-elsbetiae_contig12345.1931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=167bp
MAAEAAAVAGGGGGGGSSGPAERYSWMPSLRRSNPSRECIRRVRNDIKSV
MRDPVPGLFVCPDEDLVTVVHALVTGPFDTPYEGGFFYFVLHCPDDYPHN
PPRVRLLTTGGGKVRFNPNLYANGKVCLSILGTWSGPSWSPVHSISSVLL
SIQSLMNEKPYHNEPG*
back to top

mRNA from alignment at L-elsbetiae_contig12345:1183..3862-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12345.1931.1 ID=mRNA_L-elsbetiae_contig12345.1931.1|Name=mRNA_L-elsbetiae_contig12345.1931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2680bp|location=Sequence derived from alignment at L-elsbetiae_contig12345:1183..3862- (Laminarionema elsbetiae ELsaHSoW15)
GTGAAACAGCATCCGCGCCAGGTGGTGGGAAGAGCGTCGGGGAGGCTGGC
AAGGATAAAGGTGCGATGGCGGCGGAAGCAGCGGCTGTTGCGGGTGGCGG
CGGTGGCGGCGGCAGCAGCGGACCAGCCGAGAGGTATGTGCATACATACG
TAGGCTTTTTGTTTGGATGTTTTTGGGGGTTTCATTTGCCCCCCGTTTTC
TTCGCCGCGGCAGAATAAACCGCAGCGGCTCGCTTTTCCCCCTGATACTG
CTGCGAATCCCAGGTATAGCTGGATGCCGTCCCTGCGTCGAAGCAATCCC
TCGAGGGAGTGCATCAGGAGAGTGAGGAACGACATCAAGAGTGTCATGAG
GTACTTTCGGTTTTCGGTACAAAAAGCGTGCAAAAAACATGTTGTACTTT
CGATTTTCGATCAAAACGTGCCGTACGTCGTAGGTAGACAATAAGGTTCC
ACTCATCATATCCGTACCTTGCTTAATAGTTCTTGTTTCGCGCTATGTAT
GTGCGTACACTGGACGCTTTCGACAAGGTGCGTGCCGCTGCTGCTTGCTG
ACGTTCTTGTGTTGATTGCTGCCGGGCCACTGCCAAAATAGTGCGGCCCT
CGAAAATGCGTGTACCCCTTGCCGTCCGCTGGCATCCTGGTTCCGTGTGG
TCGCCGTAAGCCCGATTTTTTCCGTCCTTTCTTTTCGCGTGCAGAGACCC
CGTCCCCGGGCTGTTCGTGTGCCCCGACGAGGACTTGGTGACCGTGGTGC
ACGCGCTCGTCACCGGGCCGTTCGACACGCCGTATGAGGGAGGTGAGTGG
GCGATCGCTTGCTTTTTGAGACAGCACGAGGCGAGGGGGGAAAACGACGA
GGTTGTGGCTTGACCCTTTTCTGGTCTTCTTCCGTGCGTGCTTCGCCCGC
CACATACGACGACGAAGACAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAGCGGCGGTGGCGGTGGCAGTAGCGGCAGCAGCGCT
CAAACATCCAGGGGTCAAAAGCCCGGCCTCGCCGGAGGTCCTTCTCCGTG
TTGTTGTTTGCGCGCGGCACCGCTCACTTGTACGTGGCTGTATGAAATGG
GTGCCAACACTGACGAAGCAGCAGTATCAAATGATATGGAGTATCGAATT
ATACACATGCTTCGGTGCTGGTCGTGGAAGACGAGGTTCTCGGGCGCATC
ACTCCACTGCCCCCTGGATGCTACGAAGTATATATTGATTAACTGCTTTA
TCTTTCAAAATGTATATAATATGTACGCACGTTGATAAATGCAGCTTTTT
CGTAGCATCAGCCTCCTCTCCTTTTCGTCCTCCTCCAACTCGCAACGCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCTCCCTTCTCAAAACTTAACCCACACTCGGCG
GCGGTGGTTGCATCGCTGCATGCATGCCCCTTTTGGCGACCAAGGTTTCT
TCTACTTCGTGCTCCACTGCCCCGACGACTACCCGCACAACCCGCCGCGG
GTCAGGCTCCTGACGACTGGCGGGGGGAAAGTGCGGTTCAACCCCAACCT
GTACGCAAACGGAAAAGTGTGCCTTAGGTATGTATAGATGTACGTGCGTG
TTTGCGTCTGTTTGTCGCTCTCGATCGTGCCCCTTCCTCTTCGGTTTAGT
TCTTGTAGAAATATAGGTCTGAAAACGCTCCATTTCGCCGGCTCTAGAGG
CTTCACAGAGTCGGTTTTCGGCGCCTTAGAGAGCAGTATTTCTGAACCGC
TCGGTAAGGGTTGCACCGCTTCCCACCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTTTGACCACCCCCTACTGCTGCACACCCTTCACAGCTCA
TCCTCTTCTCTTTCTCTCTCTCCTCCCTTACCGCCCCTCTGTCTATCTGT
CTGTCTGTCTGTCACGCTCTACGTCCATGCATTTTATTTTATTGTGGGAA
ACTGACTGTGAAATCTATGTGCATAACTCCGTTACTTCGCCGAACTGGTG
AACGCTCAAAAGGGGCCAATGTGCGAGCCGAACGTGTACCCTCCGAAGCA
CTCTATGAAGACACGTGTATTGCCGTGCACACGGGTACACTCGCGACAGC
GCCTCTGTTCGTCCGCCTGTCTTGTCGCGCTCAACTTCTCCATGTACGGA
TGGACTAATTTGTATTTTTACCTATATATGTATCCCCTTGCTCACGTGCT
GCGTGTCTAGAAAGGAGCAAATATTCATTATCGTCGCTTGGTCACTCACT
CACTCACTCACTCTGTGGAACTTGTGGCGTGATGGACATTATTTGCTGAC
GACTCGAAAACGACTGCAGTATTCTGGGGACCTGGAGCGGACCCAGCTGG
AGCCCGGTGCACTCCATTTCCTCGGTGCTGCTGTCTATCCAGAGCCTCAT
GAACGAGAAGCCGTACCACAACGAACCAGGGTGATGGGGTGTTTTGTTGT
GAGCGCGCGCGCCGCGCGTTTCTGTGTCTGATTGCTAGAGGTTTGGAGGT
TTCGCCCGTTCAGGTGGTGAGAGTTTTTGGTAACAGTCTGGAGCCAATCG
AGGGGGAAGGCGCAAGGACGCCGCCAGCCGTGGCTCCTCGCGTTGCATGG
GCGTGTAAGCGCGTGTGGTGTGGTGTGGGC
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12345:1183..3862-

>mRNA_L-elsbetiae_contig12345.1931.1 ID=mRNA_L-elsbetiae_contig12345.1931.1|Name=mRNA_L-elsbetiae_contig12345.1931.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1002bp|location=Sequence derived from alignment at L-elsbetiae_contig12345:1183..3862- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGCGGAAGCAGCGGCTGTTGCGGGTGGCGGCGGTGGCGGCGGCAG
CAGCGGACCAGCCGAGAGATGGCGGCGGAAGCAGCGGCTGTTGCGGGTGG
CGGCGGTGGCGGCGGCAGCAGCGGACCAGCCGAGAGGTATAGCTGGATGC
CGTCCCTGCGTCGAAGCAATCCCTCGAGGGAGTGCATCAGGAGAGTGAGG
AACGACATCAAGAGTGTCATGAGGTATAGCTGGATGCCGTCCCTGCGTCG
AAGCAATCCCTCGAGGGAGTGCATCAGGAGAGTGAGGAACGACATCAAGA
GTGTCATGAGAGACCCCGTCCCCGGGCTGTTCGTGTGCCCCGACGAGGAC
TTGGTGACCGTGGTGCACGCGCTCGTCACCGGGCCGTTCGACACGCCGTA
TGAGGGAGAGACCCCGTCCCCGGGCTGTTCGTGTGCCCCGACGAGGACTT
GGTGACCGTGGTGCACGCGCTCGTCACCGGGCCGTTCGACACGCCGTATG
AGGGAGGTTTCTTCTACTTCGTGCTCCACTGCCCCGACGACTACCCGCAC
AACCCGCCGCGGGTCAGGCTCCTGACGACTGGCGGGGGGAAAGTGCGGTT
CAACCCCAACCTGTACGCAAACGGAAAAGTGTGCCTTAGGTTTCTTCTAC
TTCGTGCTCCACTGCCCCGACGACTACCCGCACAACCCGCCGCGGGTCAG
GCTCCTGACGACTGGCGGGGGGAAAGTGCGGTTCAACCCCAACCTGTACG
CAAACGGAAAAGTGTGCCTTAGTATTCTGGGGACCTGGAGCGGACCCAGC
TGGAGCCCGGTGCACTCCATTTCCTCGGTGCTGCTGTCTATCCAGAGCCT
CATGAACGAGAAGCCGTACCACAACGAACCAGGGTGATATTCTGGGGACC
TGGAGCGGACCCAGCTGGAGCCCGGTGCACTCCATTTCCTCGGTGCTGCT
GTCTATCCAGAGCCTCATGAACGAGAAGCCGTACCACAACGAACCAGGGT
GA
back to top