mRNA_L-elsbetiae_contig12342.1930.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12342.1930.1
Unique NamemRNA_L-elsbetiae_contig12342.1930.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: D8LQX3_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQX3_ECTSI)

HSP 1 Score: 161 bits (408), Expect = 2.000e-49
Identity = 80/82 (97.56%), Postives = 81/82 (98.78%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            KVRIENEVHRLVV RDRKYTNFVE+GTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK
Sbjct:   29 KVRIENEVHRLVVTRDRKYTNFVEYGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 110
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A835YZE0_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZE0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 2.460e-43
Identity = 70/82 (85.37%), Postives = 79/82 (96.34%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K +IEN+VHRLVV+RDRKYTNF+E+ +YK+IYRRYAGLFFT G+DVNDNELLALETVHLFVELL+SYFSNVCELDIVFNFNK
Sbjct:   29 KNKIENDVHRLVVSRDRKYTNFIEYQSYKIIYRRYAGLFFTLGVDVNDNELLALETVHLFVELLDSYFSNVCELDIVFNFNK 110
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S2CS13_9STRA (AP complex subunit sigma n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2CS13_9STRA)

HSP 1 Score: 139 bits (349), Expect = 2.220e-40
Identity = 66/82 (80.49%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K R+E E+HRLVV RDRKYT+F+EF  YKL+YRRYAGLFFT G+DVNDNELL LET+HLFVELL+ YFSNVCELDIVFNFNK
Sbjct:   32 KSRLEAEIHRLVVGRDRKYTSFIEFMNYKLVYRRYAGLFFTIGIDVNDNELLYLETIHLFVELLDQYFSNVCELDIVFNFNK 113
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A1Z5K077_FISSO (AP complex subunit sigma n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K077_FISSO)

HSP 1 Score: 135 bits (341), Expect = 4.000e-39
Identity = 67/91 (73.63%), Postives = 77/91 (84.62%), Query Frame = 1 
Query:    1 NVGT---FVKVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            N+GT     KVR+E EVHRLV  RD+KYTNF+E+  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYF+NVCELDIVF+FNK
Sbjct:   28 NIGTTPELEKVRMEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFNNVCELDIVFHFNK 118
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S0FJC4_9STRA (AP complex subunit sigma n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FJC4_9STRA)

HSP 1 Score: 135 bits (340), Expect = 5.520e-39
Identity = 63/82 (76.83%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K RIE+EVHRLV +RD+KYTNF+E+ +YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFN+
Sbjct:   36 KARIESEVHRLVTSRDKKYTNFIEYASYKLIYRRYAGLFFTIAVDITDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNR 117
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S2VYS3_9STRA (AP complex subunit sigma n=2 Tax=Mediophyceae TaxID=589449 RepID=A0A7S2VYS3_9STRA)

HSP 1 Score: 135 bits (340), Expect = 6.030e-39
Identity = 66/86 (76.74%), Postives = 73/86 (84.88%), Query Frame = 1 
Query:    7 GTFVKVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            G   KVRIE EVHRLV  RD+KYTNF+E+  YKLIYRRYAGLFFT  +D+ DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK
Sbjct:   35 GEAEKVRIEAEVHRLVTARDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDIADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNK 120
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S2A2C1_TRICV (AP-2 complex subunit sigma n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A2C1_TRICV)

HSP 1 Score: 137 bits (346), Expect = 6.310e-39
Identity = 65/82 (79.27%), Postives = 74/82 (90.24%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K RIE++VHRLV +RD+KYTNF+E+  YKLIYRRYAGLFFT  +DVNDNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK
Sbjct:  114 KARIESDVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVNDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNK 195
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S4IKL5_9STRA (AP complex subunit sigma n=5 Tax=Bacillariophyta TaxID=2836 RepID=A0A7S4IKL5_9STRA)

HSP 1 Score: 134 bits (338), Expect = 1.210e-38
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K RIE EVHRLV +RD+KYTNF+E+  YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK
Sbjct:   39 KTRIEAEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVADNELSYLETIHLFVELLDSYFSNVCELDIVFNFNK 120
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: A0A7S3L6S1_9STRA (AP complex subunit sigma n=2 Tax=Bacillariophycidae TaxID=33850 RepID=A0A7S3L6S1_9STRA)

HSP 1 Score: 134 bits (337), Expect = 1.720e-38
Identity = 65/82 (79.27%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            KVRIE E HRLV  RD+KYTNF+E+ +YKLIYRRYAGLFFT  +DV DNEL  LET+HLFVELL+SYFSNVCELDIVFNFNK
Sbjct:   39 KVRIEAECHRLVTARDKKYTNFIEYNSYKLIYRRYAGLFFTIAVDVTDNELSYLETIHLFVELLDSYFSNVCELDIVFNFNK 120
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BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Match: B8C940_THAPS (AP complex subunit sigma (Fragment) n=2 Tax=Thalassiosira TaxID=35127 RepID=B8C940_THAPS)

HSP 1 Score: 133 bits (335), Expect = 2.500e-38
Identity = 63/82 (76.83%), Postives = 72/82 (87.80%), Query Frame = 1 
Query:   19 KVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGMDVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK 264
            K RIE EVHRLV +RD+KYTNF+E+  YKLIYRRYAGLFFT  +DV DNEL  LE++HLFVELL+SYF+NVCELDIVFNFNK
Sbjct:   28 KARIETEVHRLVTSRDKKYTNFIEYNNYKLIYRRYAGLFFTIAVDVQDNELSYLESIHLFVELLDSYFANVCELDIVFNFNK 109
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12342.1930.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQX3_ECTSI2.000e-4997.56AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A835YZE0_9STRA2.460e-4385.37AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
A0A7S2CS13_9STRA2.220e-4080.49AP complex subunit sigma n=1 Tax=Dictyocha speculu... [more]
A0A1Z5K077_FISSO4.000e-3973.63AP complex subunit sigma n=1 Tax=Fistulifera solar... [more]
A0A7S0FJC4_9STRA5.520e-3976.83AP complex subunit sigma n=1 Tax=Minutocellus poly... [more]
A0A7S2VYS3_9STRA6.030e-3976.74AP complex subunit sigma n=2 Tax=Mediophyceae TaxI... [more]
A0A7S2A2C1_TRICV6.310e-3979.27AP-2 complex subunit sigma n=1 Tax=Trieres chinens... [more]
A0A7S4IKL5_9STRA1.210e-3879.27AP complex subunit sigma n=5 Tax=Bacillariophyta T... [more]
A0A7S3L6S1_9STRA1.720e-3879.27AP complex subunit sigma n=2 Tax=Bacillariophycida... [more]
B8C940_THAPS2.500e-3876.83AP complex subunit sigma (Fragment) n=2 Tax=Thalas... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12342contigL-elsbetiae_contig12342:817..1991 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.0
Seed ortholog evalue2.5e-37
Seed eggNOG ortholog2880.D8LQX3
Preferred nameap2s1
KEGG koko:K11481,ko:K11827
KEGG Pathwayko04114,ko04144,ko04721,ko04914,ko04961,ko05016,map04114,map04144,map04721,map04914,map04961,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0002119,GO:0002164,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005628,GO:0005634,GO:0005737,GO:0005886,GO:0005905,GO:0005933,GO:0005935,GO:0005938,GO:0006810,GO:0006886,GO:0006897,GO:0006898,GO:0007275,GO:0008104,GO:0008150,GO:0008565,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0010171,GO:0012505,GO:0012506,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030122,GO:0030125,GO:0030128,GO:0030131,GO:0030132,GO:0030135,GO:0030136,GO:0030139,GO:0030276,GO:0030427,GO:0030659,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031410,GO:0031982,GO:0032501,GO:0032502,GO:0032991,GO:0033036,GO:0034613,GO:0042763,GO:0042764,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045184,GO:0045334,GO:0046907,GO:0048475,GO:0048856,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0070727,GO:0071702,GO:0071705,GO:0071944,GO:0072583,GO:0097708,GO:0098588,GO:0098657,GO:0098796,GO:0098797,GO:0098805,GO:0099568
EggNOG free text desc.protein transporter activity
EggNOG OGsCOG5030@1,KOG0935@2759
Ec32 ortholog descriptionLongin-like domain
Ec32 orthologEc-07_001920.1
EC2.7.11.1
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01001,ko01009,ko03036,ko04131
Exons2
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.7001157-CDS-L-elsbetiae_contig12342:816..9901622815430.7001157-CDS-L-elsbetiae_contig12342:816..990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12342 817..990 -
1691682894.7118397-CDS-L-elsbetiae_contig12342:816..9901691682894.7118397-CDS-L-elsbetiae_contig12342:816..990Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12342 817..990 -
1622815430.737212-CDS-L-elsbetiae_contig12342:1901..19911622815430.737212-CDS-L-elsbetiae_contig12342:1901..1991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12342 1902..1991 -
1691682894.724889-CDS-L-elsbetiae_contig12342:1901..19911691682894.724889-CDS-L-elsbetiae_contig12342:1901..1991Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12342 1902..1991 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12342.1930.1prot_L-elsbetiae_contig12342.1930.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12342 817..1991 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12342.1930.1

>prot_L-elsbetiae_contig12342.1930.1 ID=prot_L-elsbetiae_contig12342.1930.1|Name=mRNA_L-elsbetiae_contig12342.1930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
NVGTFVKVRIENEVHRLVVNRDRKYTNFVEFGTYKLIYRRYAGLFFTFGM
DVNDNELLALETVHLFVELLESYFSNVCELDIVFNFNK
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mRNA from alignment at L-elsbetiae_contig12342:817..1991-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12342.1930.1 ID=mRNA_L-elsbetiae_contig12342.1930.1|Name=mRNA_L-elsbetiae_contig12342.1930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1175bp|location=Sequence derived from alignment at L-elsbetiae_contig12342:817..1991- (Laminarionema elsbetiae ELsaHSoW15)
AATGTTGGAACCTTTGTCAAGGTCCGCATCGAGAACGAAGTGCACCGATT
GGTGGTCAACCGCGATAGGAAATACACAAATTTTGTAGAGGTGAGGAGGA
GGAGGAGGAGGAGGAAGAGGAGGAGAAGGAACTGTCGGTGGGGGGCGCAG
GGTATGTAGGGGAGGAATACCGTGGGGAGGGAGGGGGAGGAGAGAGGGAA
GGAAGAAGCAGGAAGCAGGAGAAGCTGCTGGCAAATGGCGAGAGCAGACC
TAAAGCCACTGAATGCGTGTTCACAGCGGGGGACTTTCAGCCGCAGATAG
AAACGAACGAAACGCCACGGGGTGCAGGAAGAGAGAGAGGGGAGGGGAGG
ATAGGAGGGAGAGACGGGGGGAAAGGGAAAGGAGGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGCTGGGGATGACACGCATAAATTCACTTTGTTCCCT
CCCATTATTGGCATATGTATTTGTCGTCTGCCCCCACTGGCCCCCTTCCT
CCACTACGACTAGCTAGACGACCCAACCGGGGTCACACAGGAGGGGGGGT
TGGACCCCCTCCTGCGGTGTGCCTGCCTCAGATGTTTTTTTATCGTGAGC
AGGGTTCAGCACCCCCCACCCTCCTCAACGATGAAGTCGAAGTCATTTTT
TACCAACGAAATCGCTTTCAATTTTCCAGTAACGAATGCGAGAAAAAAAT
CGTTTCGCATTGGTATGTATGTAAGTGGCTGCAGAGCGTGCCTTCCTTCC
TTCAGGAACTTTGCGGAGTGAAAACCTTCACCTTGCACGGGCGCCGGCAT
ATGTACCTTCTTCTGTTCGTACCCCCCCCCCACCTGTCTCTGTACACCCC
TCGATCACCCCCACCACCACCACCACCGCTCGGCCAGCTTTTTACATAGT
TAGGGGGGCGTTTGTGTGTTCGGCGAGGACGAGACCCCCCACGGTTGCTT
CTCTCTTGCTCTCTGCCGACCCCCCCCGACCGAACGTCTTCTGACAAACA
GTTCGGGACGTACAAGCTGATCTACCGGAGATACGCGGGCCTTTTCTTCA
CGTTCGGGATGGACGTGAACGACAACGAGCTGCTGGCGCTGGAAACCGTG
CACCTTTTCGTCGAGCTGCTCGAGTCGTACTTCTCCAACGTGTGCGAGCT
GGACATCGTCTTCAACTTCAACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12342:817..1991-

>mRNA_L-elsbetiae_contig12342.1930.1 ID=mRNA_L-elsbetiae_contig12342.1930.1|Name=mRNA_L-elsbetiae_contig12342.1930.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig12342:817..1991- (Laminarionema elsbetiae ELsaHSoW15)
AATGTTGGAACCTTTGTCAAGGTCCGCATCGAGAACGAAGTGCACCGATT
GGTGGTCAACCGCGATAGGAAATACACAAATTTTGTAGAGAATGTTGGAA
CCTTTGTCAAGGTCCGCATCGAGAACGAAGTGCACCGATTGGTGGTCAAC
CGCGATAGGAAATACACAAATTTTGTAGAGTTCGGGACGTACAAGCTGAT
CTACCGGAGATACGCGGGCCTTTTCTTCACGTTCGGGATGGACGTGAACG
ACAACGAGCTGCTGGCGCTGGAAACCGTGCACCTTTTCGTCGAGCTGCTC
GAGTCGTACTTCTCCAACGTGTGCGAGCTGGACATCGTCTTCAACTTCAA
CAAGTTCGGGACGTACAAGCTGATCTACCGGAGATACGCGGGCCTTTTCT
TCACGTTCGGGATGGACGTGAACGACAACGAGCTGCTGGCGCTGGAAACC
GTGCACCTTTTCGTCGAGCTGCTCGAGTCGTACTTCTCCAACGTGTGCGA
GCTGGACATCGTCTTCAACTTCAACAAG
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