mRNA_L-elsbetiae_contig12338.1925.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12338.1925.1
Unique NamemRNA_L-elsbetiae_contig12338.1925.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12338.1925.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12338contigL-elsbetiae_contig12338:1771..2634 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size866
Cds size840
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0488355-UTR-L-elsbetiae_contig12338:1770..17941622815430.0488355-UTR-L-elsbetiae_contig12338:1770..1794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12338 1771..1794 +
1691682894.293602-UTR-L-elsbetiae_contig12338:1770..17941691682894.293602-UTR-L-elsbetiae_contig12338:1770..1794Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12338 1771..1794 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0592084-CDS-L-elsbetiae_contig12338:1794..26341622815430.0592084-CDS-L-elsbetiae_contig12338:1794..2634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12338 1795..2634 +
1691682894.3030107-CDS-L-elsbetiae_contig12338:1794..26341691682894.3030107-CDS-L-elsbetiae_contig12338:1794..2634Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12338 1795..2634 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12338.1925.1prot_L-elsbetiae_contig12338.1925.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12338 1795..2634 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12338.1925.1

>prot_L-elsbetiae_contig12338.1925.1 ID=prot_L-elsbetiae_contig12338.1925.1|Name=mRNA_L-elsbetiae_contig12338.1925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=280bp
MMKQAARNEKFGGFKKMKSFNHGHKIQHQPLGGEMENAGVERLLVPVIIF
YVNLFSGPPRSLPALRCSMCVSCALPSFPCLCPHLLLTPCSEQPPCLFPA
SHQGWFSSHTSRKDRETTAQGAQKDSDLPVSCAPFNSIDMYSVERQFPHD
YPHLNELRTAVQNNASSIATRINSPTQPNAHACCGRGEKVEERKNRKRRH
SAKTTTAPLFANLLFFATPDMRPDTWGRQTAPTRAEVSHLCTHPCILFII
LLARGGGKPQPVSLPDARFAPHAVLHRNDT
back to top

mRNA from alignment at L-elsbetiae_contig12338:1771..2634+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12338.1925.1 ID=mRNA_L-elsbetiae_contig12338.1925.1|Name=mRNA_L-elsbetiae_contig12338.1925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig12338:1771..2634+ (Laminarionema elsbetiae ELsaHSoW15)
GGTGGACTGAGTGTGTGGCATGAGATGATGAAGCAAGCGGCTCGAAACGA
AAAGTTCGGTGGATTTAAAAAAATGAAATCATTCAACCATGGTCACAAGA
TCCAGCATCAGCCTCTGGGTGGAGAAATGGAAAATGCAGGGGTTGAACGA
CTACTTGTTCCTGTTATTATTTTCTATGTGAATCTATTCTCTGGTCCGCC
TCGCTCTCTTCCCGCGCTTCGCTGTTCTATGTGTGTGTCCTGCGCCTTGC
CTTCGTTCCCCTGTCTCTGTCCGCACCTCTTACTCACTCCCTGCAGTGAA
CAACCCCCGTGTCTTTTTCCTGCATCTCACCAAGGTTGGTTTTCCTCTCA
CACTTCGAGAAAGGATCGCGAGACCACCGCACAGGGGGCGCAGAAAGATT
CAGATCTCCCGGTAAGTTGCGCTCCATTCAATTCGATAGATATGTACTCC
GTTGAGAGACAGTTCCCACACGACTACCCCCACCTGAACGAACTCCGCAC
AGCGGTTCAAAACAATGCGAGTTCCATCGCAACGCGAATAAACTCTCCGA
CGCAACCCAACGCACATGCCTGCTGCGGAAGAGGGGAAAAGGTGGAAGAA
AGGAAAAACAGAAAAAGACGCCATTCTGCGAAAACCACAACGGCCCCTCT
CTTTGCTAATCTCCTGTTCTTCGCTACTCCCGACATGCGGCCCGACACGT
GGGGGAGACAGACAGCCCCGACACGTGCAGAGGTATCTCACCTGTGCACC
CATCCCTGCATACTCTTCATCATACTTCTCGCGCGCGGCGGAGGCAAGCC
GCAACCAGTCTCCCTACCGGACGCACGTTTTGCGCCTCACGCTGTGCTGC
ACCGGAATGACACA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12338:1771..2634+

>mRNA_L-elsbetiae_contig12338.1925.1 ID=mRNA_L-elsbetiae_contig12338.1925.1|Name=mRNA_L-elsbetiae_contig12338.1925.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1680bp|location=Sequence derived from alignment at L-elsbetiae_contig12338:1771..2634+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATGAAGCAAGCGGCTCGAAACGAAAAGTTCGGTGGATTTAAAAAAAT
GAAATCATTCAACCATGGTCACAAGATCCAGCATCAGCCTCTGGGTGGAG
AAATGGAAAATGCAGGGGTTGAACGACTACTTGTTCCTGTTATTATTTTC
TATGTGAATCTATTCTCTGGTCCGCCTCGCTCTCTTCCCGCGCTTCGCTG
TTCTATGTGTGTGTCCTGCGCCTTGCCTTCGTTCCCCTGTCTCTGTCCGC
ACCTCTTACTCACTCCCTGCAGTGAACAACCCCCGTGTCTTTTTCCTGCA
TCTCACCAAGGTTGGTTTTCCTCTCACACTTCGAGAAAGGATCGCGAGAC
CACCGCACAGGGGGCGCAGAAAGATTCAGATCTCCCGGTAAGTTGCGCTC
CATTCAATTCGATAGATATGTACTCCGTTGAGAGACAGTTCCCACACGAC
TACCCCCACCTGAACGAACTCCGCACAGCGGTTCAAAACAATGCGAGTTC
CATCGCAACGCGAATAAACTCTCCGACGCAACCCAACGCACATGCCTGCT
GCGGAAGAGGGGAAAAGGTGGAAGAAAGGAAAAACAGAAAAAGACGCCAT
TCTGCGAAAACCACAACGGCCCCTCTCTTTGCTAATCTCCTGTTCTTCGC
TACTCCCGACATGCGGCCCGACACGTGGGGGAGACAGACAGCCCCGACAC
GTGCAGAGGTATCTCACCTGTGCACCCATCCCTGCATACTCTTCATCATA
CTTCTCGCGCGCGGCGGAGGCAAGCCGCAACCAGTCTCCCTACCGGACGC
ACGTTTTGCGCCTCACGCTGTGCTGCACCGGAATGACACAATGATGAAGC
AAGCGGCTCGAAACGAAAAGTTCGGTGGATTTAAAAAAATGAAATCATTC
AACCATGGTCACAAGATCCAGCATCAGCCTCTGGGTGGAGAAATGGAAAA
TGCAGGGGTTGAACGACTACTTGTTCCTGTTATTATTTTCTATGTGAATC
TATTCTCTGGTCCGCCTCGCTCTCTTCCCGCGCTTCGCTGTTCTATGTGT
GTGTCCTGCGCCTTGCCTTCGTTCCCCTGTCTCTGTCCGCACCTCTTACT
CACTCCCTGCAGTGAACAACCCCCGTGTCTTTTTCCTGCATCTCACCAAG
GTTGGTTTTCCTCTCACACTTCGAGAAAGGATCGCGAGACCACCGCACAG
GGGGCGCAGAAAGATTCAGATCTCCCGGTAAGTTGCGCTCCATTCAATTC
GATAGATATGTACTCCGTTGAGAGACAGTTCCCACACGACTACCCCCACC
TGAACGAACTCCGCACAGCGGTTCAAAACAATGCGAGTTCCATCGCAACG
CGAATAAACTCTCCGACGCAACCCAACGCACATGCCTGCTGCGGAAGAGG
GGAAAAGGTGGAAGAAAGGAAAAACAGAAAAAGACGCCATTCTGCGAAAA
CCACAACGGCCCCTCTCTTTGCTAATCTCCTGTTCTTCGCTACTCCCGAC
ATGCGGCCCGACACGTGGGGGAGACAGACAGCCCCGACACGTGCAGAGGT
ATCTCACCTGTGCACCCATCCCTGCATACTCTTCATCATACTTCTCGCGC
GCGGCGGAGGCAAGCCGCAACCAGTCTCCCTACCGGACGCACGTTTTGCG
CCTCACGCTGTGCTGCACCGGAATGACACA
back to top