mRNA_L-elsbetiae_contig12332.1924.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12332.1924.1
Unique NamemRNA_L-elsbetiae_contig12332.1924.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A6H5KCK6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCK6_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 7.160e-32
Identity = 87/153 (56.86%), Postives = 99/153 (64.71%), Query Frame = 1 
Query:    1 MSAPLSSLRTNLPSTSL--------VGNCLRKSASRTRRRCVSAAAGAASTNSR-RRTGTGVDSGRATTKGGITIRTQP-PLLPHSRLFSSAVSATSPTL-FGDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALEDAAG 426
            MS PL S+R NL S++L         G C+R  ASR  RRC        S++SR  R  T   S R      + +   P P+L  SR  SSA SA +PTL FGDTIIVTKRCAERLNELR+ KAQP LKLRLSVEGGGCSGFQYKF+LEDAAG
Sbjct:    1 MSLPLLSVRANLSSSALGSSLRHPASGRCVRNLASR--RRC--------SSDSRCNRPPTSCWSRRGRAPSAVMVSRSPSPILLQSRQLSSAASAAAPTLLFGDTIIVTKRCAERLNELRQAKAQPDLKLRLSVEGGGCSGFQYKFSLEDAAG 143
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A835ZPC5_9STRA (Fe-S_biosyn domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZPC5_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 3.500e-12
Identity = 35/64 (54.69%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  238 SSAVSATSPTLFGDTIIVTKRCAERLNELRETKAQPA-LKLRLSVEGGGCSGFQYKFALEDAAG 426
            S++ S+  P    D +IVTK CAER+N+LR+ +   A L+LRLSVEGGGCSGFQY F ++D  G
Sbjct:   96 STSNSSIGPQSLDDAVIVTKSCAERINQLRKRRGGDAPLRLRLSVEGGGCSGFQYTFTMDDGTG 159
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A7S3X4W8_9SPIT (Hypothetical protein n=2 Tax=Choreotrichia TaxID=141411 RepID=A0A7S3X4W8_9SPIT)

HSP 1 Score: 61.2 bits (147), Expect = 1.800e-8
Identity = 38/89 (42.70%), Postives = 50/89 (56.18%), Query Frame = 1 
Query:  220 PHSRLFSSAVSATSPTLFG---------DTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALEDAAGAAGGEGAAEDE 459
            PH+R+      A  P  +            I++T+RCAER+ +L E +A  A  LR+SVE GGCSGFQYKF LE A     GE A +D+
Sbjct:   48 PHARMLRRLAQAAPPRGWARVLSDAASKQAILITQRCAERIAQLSE-RATAARALRVSVEPGGCSGFQYKFTLESA-----GEHAEDDK 130
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A800DIX3_9PROT (Iron-sulfur cluster assembly accessory protein (Fragment) n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A800DIX3_9PROT)

HSP 1 Score: 57.8 bits (138), Expect = 2.750e-8
Identity = 25/48 (52.08%), Postives = 34/48 (70.83%), Query Frame = 1 
Query:  274 GDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALED 417
            G  I +T  CA+R+ ELRE +    L LR+++ GGGCSGFQY F+L+D
Sbjct:   10 GHKITITDSCAKRIKELREMEGNADLMLRVAISGGGCSGFQYGFSLDD 57
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A0P5X7Q1_9CRUS (Iron-sulfur cluster assembly 1, mitochondrial n=1 Tax=Daphnia magna TaxID=35525 RepID=A0A0P5X7Q1_9CRUS)

HSP 1 Score: 59.7 bits (143), Expect = 2.940e-8
Identity = 31/66 (46.97%), Postives = 43/66 (65.15%), Query Frame = 1 
Query:  217 LPHSRLFSSAVSATSPTLFGDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALE 414
            L H + FSSA +A       +++ +T++C +RL EL E    P   LR+SVEGGGCSGFQY F+L+
Sbjct:   12 LSHIKSFSSAKNAVQMIQQTESVKMTEKCVKRLKELHEKS--PEKTLRISVEGGGCSGFQYLFSLD 75
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: W7UC88_9STRA (Iron-sulfur cluster assembly 2 mitochondrial-like protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UC88_9STRA)

HSP 1 Score: 60.5 bits (145), Expect = 3.810e-8
Identity = 33/78 (42.31%), Postives = 45/78 (57.69%), Query Frame = 1 
Query:  229 RLFSSAVSATSPTLFGDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALEDAAGAAGGEGAAEDED 462
            +L S+AVS +      + ++VT  C +R+  L+    +  LKLRLSVEGGGCSGF Y F +ED        G  ED+D
Sbjct:   58 QLSSNAVSNSPQMSLDEDVVVTNACIKRIKALQVKTGKENLKLRLSVEGGGCSGFTYTFTMED--------GPVEDDD 127
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: UPI001184B27B (iron-sulfur cluster insertion protein ErpA n=1 Tax=Rhodoligotrophos appendicifer TaxID=987056 RepID=UPI001184B27B)

HSP 1 Score: 58.5 bits (140), Expect = 4.120e-8
Identity = 28/48 (58.33%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:  274 GDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALED 417
            G+TI +T+R AER+NE+   ++ P   LR+SV GGGCSGFQY+FAL+D
Sbjct:    2 GETIQITERAAERINEIVAGESTPKA-LRVSVSGGGCSGFQYEFALDD 48
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A1Y1HZW6_KLENI (ISCA-like protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1HZW6_KLENI)

HSP 1 Score: 59.7 bits (143), Expect = 5.210e-8
Identity = 35/70 (50.00%), Postives = 46/70 (65.71%), Query Frame = 1 
Query:  211 PLLPHSRLFSSAVSATSPTLFGDTIIVTKRCAERLNELRETK--AQPALKLRLSVEGGGCSGFQYKFALE 414
            P L   R F+ AV   S T   DT+ +T+ CA+RL EL++ +  +   L LRLSVEGGGCSGFQY F+L+
Sbjct:   39 PSLHLRRWFAEAVRVESFT-DDDTVHITESCAQRLKELQQEEGVSPDQLMLRLSVEGGGCSGFQYSFSLD 107
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A2D6JSF1_9PROT (Iron-sulfur cluster insertion protein ErpA n=1 Tax=Rhodospirillaceae bacterium TaxID=1898112 RepID=A0A2D6JSF1_9PROT)

HSP 1 Score: 58.2 bits (139), Expect = 7.070e-8
Identity = 26/52 (50.00%), Postives = 34/52 (65.38%), Query Frame = 1 
Query:  274 GDTIIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALEDAAGA 429
            G  I +T  CA R+ ELRE +    L LR+++ GGGCSGFQY F+L+D   A
Sbjct:   10 GHEITITDSCARRIKELREMEGNADLMLRVAISGGGCSGFQYGFSLDDTLAA 61
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BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Match: A0A6J2X1F6_SITOR (iron-sulfur cluster assembly 2 homolog, mitochondrial n=1 Tax=Sitophilus oryzae TaxID=7048 RepID=A0A6J2X1F6_SITOR)

HSP 1 Score: 58.5 bits (140), Expect = 8.840e-8
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 1 
Query:  283 IIVTKRCAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALE 414
            +I+T+RCA+RLN +  TK  P   LR+SVEGGGCSGFQYKF L+
Sbjct:   38 LILTERCAQRLNNI--TKESPKTFLRVSVEGGGCSGFQYKFDLD 79
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12332.1924.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCK6_9PHAE7.160e-3256.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZPC5_9STRA3.500e-1254.69Fe-S_biosyn domain-containing protein n=1 Tax=Trib... [more]
A0A7S3X4W8_9SPIT1.800e-842.70Hypothetical protein n=2 Tax=Choreotrichia TaxID=1... [more]
A0A800DIX3_9PROT2.750e-852.08Iron-sulfur cluster assembly accessory protein (Fr... [more]
A0A0P5X7Q1_9CRUS2.940e-846.97Iron-sulfur cluster assembly 1, mitochondrial n=1 ... [more]
W7UC88_9STRA3.810e-842.31Iron-sulfur cluster assembly 2 mitochondrial-like ... [more]
UPI001184B27B4.120e-858.33iron-sulfur cluster insertion protein ErpA n=1 Tax... [more]
A0A1Y1HZW6_KLENI5.210e-850.00ISCA-like protein n=1 Tax=Klebsormidium nitens Tax... [more]
A0A2D6JSF1_9PROT7.070e-850.00Iron-sulfur cluster insertion protein ErpA n=1 Tax... [more]
A0A6J2X1F6_SITOR8.840e-863.64iron-sulfur cluster assembly 2 homolog, mitochondr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12332contigL-elsbetiae_contig12332:70..1742 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionFeS cluster biogenesis
Ec32 orthologEc-14_002770.1
Exons2
Model size519
Cds size519
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815430.0060253-CDS-L-elsbetiae_contig12332:69..2791622815430.0060253-CDS-L-elsbetiae_contig12332:69..279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12332 70..279 -
1691682894.2744672-CDS-L-elsbetiae_contig12332:69..2791691682894.2744672-CDS-L-elsbetiae_contig12332:69..279Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12332 70..279 -
1622815430.0156791-CDS-L-elsbetiae_contig12332:1433..17421622815430.0156791-CDS-L-elsbetiae_contig12332:1433..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12332 1434..1742 -
1691682894.2854197-CDS-L-elsbetiae_contig12332:1433..17421691682894.2854197-CDS-L-elsbetiae_contig12332:1433..1742Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12332 1434..1742 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12332.1924.1prot_L-elsbetiae_contig12332.1924.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12332 70..1742 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12332.1924.1

>prot_L-elsbetiae_contig12332.1924.1 ID=prot_L-elsbetiae_contig12332.1924.1|Name=mRNA_L-elsbetiae_contig12332.1924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=173bp
MSAPLSSLRTNLPSTSLVGNCLRKSASRTRRRCVSAAAGAASTNSRRRTG
TGVDSGRATTKGGITIRTQPPLLPHSRLFSSAVSATSPTLFGDTIIVTKR
CAERLNELRETKAQPALKLRLSVEGGGCSGFQYKFALEDAAGAAGGEGAA
EDEDGGDNDEDSVDEDEDDIDQ*
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mRNA from alignment at L-elsbetiae_contig12332:70..1742-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12332.1924.1 ID=mRNA_L-elsbetiae_contig12332.1924.1|Name=mRNA_L-elsbetiae_contig12332.1924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1673bp|location=Sequence derived from alignment at L-elsbetiae_contig12332:70..1742- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCACCGCTCAGTTCTTTGCGAACGAACCTGCCGTCAACCTCGTT
GGTCGGTAACTGCTTGAGAAAATCTGCTTCGAGAACACGACGCCGCTGTG
TCAGCGCCGCCGCGGGCGCTGCTAGCACAAACAGCAGGAGACGAACTGGG
ACTGGGGTGGACTCGGGGCGAGCTACTACGAAGGGGGGGATAACGATAAG
GACGCAGCCGCCATTGCTGCCGCATTCGCGATTGTTTTCCTCGGCGGTAT
CGGCAACATCGCCGACACTTTTTGGCGACACCATCATCGTCACGAAGCGT
TGCGCCGAGGTATCGTACTTAGACAGAAGAGAAATGGTGTTTTTGGCGGT
GTTTCTCTCGTGGAACAGCAGTTCAAGTTTCGCCCCCTCCTGTGTGAACG
GCTGGCACGTCTGGGTTGCGTACAGCGACGTTGATAGGCTGCACTGAAAT
GTGTATTAGAAGACTTTAGCGTCGACGAACGACACTCTCTAGACTAAATC
AACATGGACTTGTCTGTAAATACATGACACACAAAACATGTAATGGATAC
AGAGGCATTTATGTAGACTGGTATGTAGGAGTTAAGAGTAAGTGCAGGCA
GTCAGTACCGTTGTCGTCTCTAAGACCCCCCCCCCCTTTGAGTTTCCCCA
TCACCTTCTCGGCTCGGAATCATGTTTATAATTCCTCTGAGTTATCCGGG
GGGTAGGTATGTATTAAATAGAAATTACAACAACAAATTCGTATGTATCT
AAGATCTCCCCGGGGGAACGATTACTCCAGTAGATCTATGTAATAGTATG
TACACTGACCTACTCCGTTATACTTCTAGCCACTTGCGCCGAAGTGACAG
ACGCCAGAATAGATGGGGCGAACACCTACACACGTACAAACAGTGCTGCT
GTACGTAGCTGGTTGGCTGCTCAAAAAGCGAAAGAAGTAGAGATGGCCAG
TGCCTCACTCATCACAGAGCAGTTAGTTCGGGTTCGGTCTGTTCGCAGGG
CAGATAAATTAAAAATCGGTACCTCATGGGACGCGCAGTAGTACCAAGCT
GACGTGTGTCGTGGCTGCAGCGGCAGTCCCTTTCTGGTCGTCTTTGCGAT
GAAAAAATGCGTCTCTCATCCATGGCACACAGGCGGTATCCCCCCCCCCC
CCCCCCCTCCTCCTCCCAAAACAAAGATCCTCAAGGACAATCGATCCCTT
GAGCTGATGAAAAAAACTCCTGTCCTGTGCCTGTTGCTATGACAGTAGTG
CTATGAACAGCAGCGCGAAGATGCAGTCGTCTGGAGCTACATAATACACG
AACACCCGCCTAATGCACGCTCGACGGCACGCTACTGTTTTTTTTTCGCC
TTGGTGTCCCGCATCCGGCACCCGCCCGGGTGATAAAGAGTTTGTGGATC
CCTCGGCATGATTAATGCCCAACGCCTACATGTGTATAATTTACCCAATT
GTTGACCAACCAGCGGCTAAACGAGCTGAGAGAGACCAAGGCGCAGCCGG
CGCTGAAGCTCCGGCTGTCCGTCGAGGGGGGAGGCTGCTCCGGCTTTCAG
TATAAGTTTGCCCTGGAAGACGCGGCGGGAGCGGCGGGGGGTGAGGGCGC
AGCGGAAGACGAAGACGGCGGCGACAACGACGAAGACAGCGTCGACGAGG
ATGAGGACGACATCGATCAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12332:70..1742-

>mRNA_L-elsbetiae_contig12332.1924.1 ID=mRNA_L-elsbetiae_contig12332.1924.1|Name=mRNA_L-elsbetiae_contig12332.1924.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1038bp|location=Sequence derived from alignment at L-elsbetiae_contig12332:70..1742- (Laminarionema elsbetiae ELsaHSoW15)
ATGTCGGCACCGCTCAGTTCTTTGCGAACGAACCTGCCGTCAACCTCGTT
GGTCGGTAACTGCTTGAGAAAATCTGCTTCGAGAACACGACGCCGCTGTG
TCAGCGCCGCCGCGGGCGCTGCTAGCACAAACAGCAGGAGACGAACTGGG
ACTGGGGTGGACTCGGGGCGAGCTACTACGAAGGGGGGGATAACGATAAG
GACGCAGCCGCCATTGCTGCCGCATTCGCGATTGTTTTCCTCGGCGGTAT
CGGCAACATCGCCGACACTTTTTGGCGACACCATCATCGTCACGAAGCGT
TGCGCCGAGATGTCGGCACCGCTCAGTTCTTTGCGAACGAACCTGCCGTC
AACCTCGTTGGTCGGTAACTGCTTGAGAAAATCTGCTTCGAGAACACGAC
GCCGCTGTGTCAGCGCCGCCGCGGGCGCTGCTAGCACAAACAGCAGGAGA
CGAACTGGGACTGGGGTGGACTCGGGGCGAGCTACTACGAAGGGGGGGAT
AACGATAAGGACGCAGCCGCCATTGCTGCCGCATTCGCGATTGTTTTCCT
CGGCGGTATCGGCAACATCGCCGACACTTTTTGGCGACACCATCATCGTC
ACGAAGCGTTGCGCCGAGCGGCTAAACGAGCTGAGAGAGACCAAGGCGCA
GCCGGCGCTGAAGCTCCGGCTGTCCGTCGAGGGGGGAGGCTGCTCCGGCT
TTCAGTATAAGTTTGCCCTGGAAGACGCGGCGGGAGCGGCGGGGGGTGAG
GGCGCAGCGGAAGACGAAGACGGCGGCGACAACGACGAAGACAGCGTCGA
CGAGGATGAGGACGACATCGATCAGTGACGGCTAAACGAGCTGAGAGAGA
CCAAGGCGCAGCCGGCGCTGAAGCTCCGGCTGTCCGTCGAGGGGGGAGGC
TGCTCCGGCTTTCAGTATAAGTTTGCCCTGGAAGACGCGGCGGGAGCGGC
GGGGGGTGAGGGCGCAGCGGAAGACGAAGACGGCGGCGACAACGACGAAG
ACAGCGTCGACGAGGATGAGGACGACATCGATCAGTGA
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