mRNA_L-elsbetiae_contig12330.1923.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12330.1923.1
Unique NamemRNA_L-elsbetiae_contig12330.1923.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12330.1923.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12330contigL-elsbetiae_contig12330:2729..3906 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size424
Cds size423
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.9460158-CDS-L-elsbetiae_contig12330:2728..30861622815429.9460158-CDS-L-elsbetiae_contig12330:2728..3086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12330 2729..3086 -
1691682894.2504134-CDS-L-elsbetiae_contig12330:2728..30861691682894.2504134-CDS-L-elsbetiae_contig12330:2728..3086Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12330 2729..3086 -
1622815429.9586694-CDS-L-elsbetiae_contig12330:3841..39061622815429.9586694-CDS-L-elsbetiae_contig12330:3841..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12330 3842..3906 -
1691682894.2660096-CDS-L-elsbetiae_contig12330:3841..39061691682894.2660096-CDS-L-elsbetiae_contig12330:3841..3906Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12330 3842..3906 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12330.1923.1prot_L-elsbetiae_contig12330.1923.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12330 2729..3906 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12330.1923.1

>prot_L-elsbetiae_contig12330.1923.1 ID=prot_L-elsbetiae_contig12330.1923.1|Name=mRNA_L-elsbetiae_contig12330.1923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=141bp
RPYTDSGPGIYLRGEGLGFGLWELSTYFIHTREKSWRCGSTIGLKYARTS
LPERLLIFIYLSRYLGSACFFPADKGFATCCGEIQAATCSGRGRSAVGGH
GALPAAPPIAGTGTATPRAGPAREMNAPAPPPAPRSASSGQ
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mRNA from alignment at L-elsbetiae_contig12330:2729..3906-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12330.1923.1 ID=mRNA_L-elsbetiae_contig12330.1923.1|Name=mRNA_L-elsbetiae_contig12330.1923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1178bp|location=Sequence derived from alignment at L-elsbetiae_contig12330:2729..3906- (Laminarionema elsbetiae ELsaHSoW15)
AGGCCTTACACCGATTCAGGGCCAGGGATATATCTCCGAGGAGAAGGTCT
TGGCTTCGGCTTGTGGTGAGTTGAGGCAGAGGCAATACCACACTTGGCAG
CTTGCCTCATCACCCGGTACCCTACTGACAGATGGATGCTGCTGTGTTCA
TTTTCCGCTTGTGTACGGCGGTCTCCATACGCGCGTGACTCCTCCATAAA
CGCAAGGCGTGGCGTTGTATCACAGACACTCCAGCCCTCATTACAGGATA
GCTGTCAAGCTTGTTCGTTGCCTCAATCTTATCGAGGGGGCTTGCAACCA
TCTAGCTTGCAGTAAACAGCAGTTTTCCGTATGGTGTGCAGAACAGCTCT
CCTTGAAACCTCTAAACTGGACTGGCTTCTATTTCAAAAATGGAAAAGAA
GTATTGTAGACAACAGTGTTAAATAAATATATGTGATATTTTGGTCGAGA
TCCACGCCGCTGTACTCCCCGGTCACCCAGGCTTGTTTTTATGAGGGACC
CGCCTCTCCAATAACTCCTTCCTATATTGTCTATTGTAACTCTCCAGCAG
CAGTAAGAACTGTCAATACACAATACCCCGCCGGCGTGGGATACCTACTC
GCAACAGTATCTACTTGTAGTCTAGATATATATTCCGCTGTTGTTGTTCA
GGAGTATCAGTCAGCTGATGTGCCACAGGCGGGGCGCCAAACAGAGAAGG
GCTTTAATTTAATGAAATCATGAGATCAAATGAATTAGAATGGGCTTACA
TGTAGTATCTAGGATAATCTGCAACAACGGCGTTGACCATCATCCTCTTT
CTCTCCACCACAATATCAAGGGAGCTATCGACGTACTTCATACACACCAG
AGAGAAAAGCTGGCGCTGCGGATCAACCATCGGCCTCAAGTACGCACGAA
CCTCGCTACCCGAGAGGTTGCTTATATTTATCTATTTATCTAGATATTTA
GGTAGCGCTTGCTTTTTTCCCGCAGACAAAGGTTTTGCCACGTGTTGCGG
CGAGATTCAAGCGGCAACATGTTCGGGAAGGGGAAGAAGCGCGGTCGGGG
GGCATGGAGCGCTACCAGCGGCGCCACCGATAGCGGGGACGGGGACAGCG
ACTCCGCGGGCGGGGCCGGCTCGGGAGATGAACGCTCCTGCTCCTCCTCC
CGCCCCAAGAAGCGCTTCGTCTGGCCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12330:2729..3906-

>mRNA_L-elsbetiae_contig12330.1923.1 ID=mRNA_L-elsbetiae_contig12330.1923.1|Name=mRNA_L-elsbetiae_contig12330.1923.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=846bp|location=Sequence derived from alignment at L-elsbetiae_contig12330:2729..3906- (Laminarionema elsbetiae ELsaHSoW15)
AGGCCTTACACCGATTCAGGGCCAGGGATATATCTCCGAGGAGAAGGTCT
TGGCTTCGGCTTGTGAGGCCTTACACCGATTCAGGGCCAGGGATATATCT
CCGAGGAGAAGGTCTTGGCTTCGGCTTGTGGGAGCTATCGACGTACTTCA
TACACACCAGAGAGAAAAGCTGGCGCTGCGGATCAACCATCGGCCTCAAG
TACGCACGAACCTCGCTACCCGAGAGGTTGCTTATATTTATCTATTTATC
TAGATATTTAGGTAGCGCTTGCTTTTTTCCCGCAGACAAAGGTTTTGCCA
CGTGTTGCGGCGAGATTCAAGCGGCAACATGTTCGGGAAGGGGAAGAAGC
GCGGTCGGGGGGCATGGAGCGCTACCAGCGGCGCCACCGATAGCGGGGAC
GGGGACAGCGACTCCGCGGGCGGGGCCGGCTCGGGAGATGAACGCTCCTG
CTCCTCCTCCCGCCCCAAGAAGCGCTTCGTCTGGCCAGGGAGCTATCGAC
GTACTTCATACACACCAGAGAGAAAAGCTGGCGCTGCGGATCAACCATCG
GCCTCAAGTACGCACGAACCTCGCTACCCGAGAGGTTGCTTATATTTATC
TATTTATCTAGATATTTAGGTAGCGCTTGCTTTTTTCCCGCAGACAAAGG
TTTTGCCACGTGTTGCGGCGAGATTCAAGCGGCAACATGTTCGGGAAGGG
GAAGAAGCGCGGTCGGGGGGCATGGAGCGCTACCAGCGGCGCCACCGATA
GCGGGGACGGGGACAGCGACTCCGCGGGCGGGGCCGGCTCGGGAGATGAA
CGCTCCTGCTCCTCCTCCCGCCCCAAGAAGCGCTTCGTCTGGCCAG
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