mRNA_L-elsbetiae_contig12327.1920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12327.1920.1
Unique NamemRNA_L-elsbetiae_contig12327.1920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A1E7FTR4_9STRA (VWFA domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FTR4_9STRA)

HSP 1 Score: 104 bits (259), Expect = 6.900e-25
Identity = 73/179 (40.78%), Postives = 97/179 (54.19%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGG-GTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQNIGVEVIAFGDDANMIALGLIANAGRT--TVTAAAAGGLTNVFVNIARGASAASQELYEEICKRIAEEVSTQLMLEYL 528
            YN F+  R   Q   D VS+VQFD GARVTCQ   I +AP  L   GG  TCF  A + A  + +K  +S +  ++FMSDG A D+  AA T +++     N+ + VI FG   +   L  IA A       TA+  G L+ VFV IA G    ++ L  EI KRI+E V+ +L  EYL
Sbjct:   12 YNKFMQSRRQRQRDSDLVSVVQFDGGARVTCQLQNIVNAPAELGYSGGCSTCFLPAALLACDLTQKTPSSHTPVIIFMSDGCAGDSIAAANTFAAL----NNVELHVIGFGGGTDTSQLQQIARASANGKVHTASDIGSLSKVFVQIATGGDDVAKVLEAEIGKRISEAVTNRLSAEYL 186          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A448ZCC6_9STRA (Chloroplast protein-transporting ATPase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZCC6_9STRA)

HSP 1 Score: 105 bits (261), Expect = 6.220e-23
Identity = 75/182 (41.21%), Postives = 101/182 (55.49%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQN----IGVEVIAF--GDDANMIALGLIANAGRTTVTAAAAGGLTNVFVNIARGASAASQELYEEICKRIAEEVSTQLMLEYL 528
            YN +L+ R   Q   D+VS+VQFD+GARV C+   I  AP NL M  GGT FA A   A  V RK   S +  ++F+SDG A D+ +AA    ++  E +N    I + VI F  G D++ +     A+A     TA     LT VFV IA G + AS  L EEI KRI++ V+ ++  EYL
Sbjct: 3088 YNKYLENRRRRQHHLDSVSVVQFDNGARVICELENIADAPVNLCMSAGGTKFAPAAELAYAVARKTPPSHTPVIIFISDGCADDSEQAASFFETLNQEMKNRYGDIELHVIGFRGGTDSSQLQKISRASANGRVHTADDIDSLTKVFVQIASGDAVASA-LEEEIGKRISDAVTDRISAEYL 3268          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A7S4MJS1_9STRA (Hypothetical protein (Fragment) n=2 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4MJS1_9STRA)

HSP 1 Score: 99.0 bits (245), Expect = 3.900e-22
Identity = 72/181 (39.78%), Postives = 100/181 (55.25%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQNIG-----VEVIAFGDDANMIALGLIANA---GRTTVTAAAAGGLTNVFVNIARGASAASQELYEEICKRIAEEVSTQLML 519
            YN  + +R  +Q   D VS++QFD  A VT   + I  AP  L  +GGGTCF+ A   A++V     A+ +  +VFMSDG A DA +AA T S + N  Q +      + VIAFG  A+   L +IA +   G+  V+A  A  L+++FV IA G +     L  EI KRI+E VS +L L
Sbjct:   78 YNKCIAQRRQNQNESDLVSVIQFDGCATVTVSMTAISQAPSQLGFRGGGTCFSPAAEHARQVAMSCPATHAPLVVFMSDGCAGDASQAANTFSQLNNHIQGMSGNELELHVIAFGGGASTSQLQMIAGSSHNGKLHVSADTAQ-LSDIFVEIAGGGNV-GDVLEAEIGKRISEAVSDKLAL 256          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A0D2MDD5_9CHLO (VWFA domain-containing protein n=1 Tax=Monoraphidium neglectum TaxID=145388 RepID=A0A0D2MDD5_9CHLO)

HSP 1 Score: 96.7 bits (239), Expect = 4.920e-20
Identity = 70/180 (38.89%), Postives = 96/180 (53.33%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGE--AFDAHEAAGTLSSIVNERQNIGVEVIAFGDDANMIALGLIANAGRTTVTAAAAGGLT--NVFVNIARGASAASQELYEEICKRIAEEVSTQLMLEYL 528
            Y   L RR +DQ + D VS+V F     V    +PID+AP +L   GGGTCFA A+ + QR+L    A  +  L+FMSDGE  +  A +A   L S +    N+ V  IAFG    ++   + A AG      AAAGGL    VFV IA   SA    L  E  +++ E +S ++M++YL
Sbjct:  625 YGQLLARRRSDQNQGDVVSVVTFCSSPHVAAAVTPIDAAPSSLPYSGGGTCFAPALAECQRLLEAAPARYTPVLIFMSDGEDCSSGATQAVQQLCSRLR-MCNLQVHTIAFGSGIKLLE-DMAAAAGSAGQYHAAAGGLQLQQVFVQIAAECSAVDG-LVREFAQKLTEMISVKIMVDYL 801          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A7S2E4I8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2E4I8_9STRA)

HSP 1 Score: 89.4 bits (220), Expect = 1.630e-17
Identity = 66/177 (37.29%), Postives = 91/177 (51.41%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQN-------IGVEVIAFGDDANMIALGLIANAGRTTV--TAAAAGGLTNVFVNIARGASAASQELYEEICKRIAEEVS 504
            YNG++ R   +Q   D VS+VQFD  A VT +   I + P  L   GGGT F  A  +A  +     ++ +  +VFMSDGEA DA+EAA   S + N  Q        + + VIAFG  A+   L  IA++ R      +A    L+N+FV IA      +  L  EI KRI++ VS
Sbjct:  432 YNGYITRLRQNQRYSDLVSVVQFDSAAMVTVEKKSISNVPSALGFSGGGTSFLPAAARACALAMSTPSTHTPSIVFMSDGEAGDANEAATRFSQLNNSFQGHIANANELDLNVIAFGSGASHEQLKKIASSSRNGKFQMSADTAELSNIFVQIADKGQVVNL-LEAEIGKRISDAVS 607          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A815I2P8_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A815I2P8_9BILA)

HSP 1 Score: 79.3 bits (194), Expect = 5.850e-14
Identity = 62/184 (33.70%), Postives = 94/184 (51.09%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQNIG-----VEVIAFGDD--ANMIALGLIANAGRTTVTAAAAG-GLTNVFVNIARGASAASQELYEEICKRIAEEVSTQLMLEYL 528
            Y  FL+ R +DQG  D  S+VQF   AR   Q   +  AP+NL+MKGGGT +   +  A  VL KD  + S  ++FMSDGE  D  +    L+ I  + QN G        +AFG +  +    L  +A AG   +  A  G  L+ VF  IA   +  +  L     + +++++S ++M++YL
Sbjct: 4244 YVNFLNTRESDQGGDDIFSVVQFASTARPIYQGCKLAQAPRNLTMKGGGTTYIAGLKIADDVLTKDTTNSSIVMIFMSDGED-DNSQPLPKLTEIRKKYQNSGRRNFVCHTVAFGANVGSGRQLLQEMATAGNGQLFDARDGIQLSQVFTQIAADCNV-TNTLVNRFAEILSKDISLKIMVDYL 4425          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A820IIF9_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sp. Silwood2 TaxID=2762512 RepID=A0A820IIF9_9BILA)

HSP 1 Score: 75.5 bits (184), Expect = 1.100e-13
Identity = 42/114 (36.84%), Postives = 59/114 (51.75%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNER----QNIGVEVIAFG 330
            YN FL RR  DQG  D +++VQFD  A   C    + SAP+ LS+ GGGT +A  + +A + +  D    S  ++FMSDG A D  E+   + S +  +     N     I FG
Sbjct:   71 YNNFLTRRHDDQGGDDLITVVQFDSSAHTICSRQKVASAPRTLSIHGGGTNYAKGLKEATKEIENDKTKASIVMIFMSDG-ADDGSESPENIISQLKSKYTKDHNFIFHTIGFG 183          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A818VLT5_9BILA (Hypothetical protein n=1 Tax=Adineta steineri TaxID=433720 RepID=A0A818VLT5_9BILA)

HSP 1 Score: 73.9 bits (180), Expect = 4.370e-12
Identity = 46/115 (40.00%), Postives = 61/115 (53.04%), Query Frame = 1
Query:    1 YNGFLDRRMTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQAQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQNIG-----VEVIAFG 330
            Y  FL+ R +DQG  D  S+VQF   AR   Q   +  AP+NL+MKGGGT +   +  A  VL KD  + S  ++FMSDGE  D  +    L+ I  + QN G        +AFG
Sbjct: 8539 YVNFLNTRESDQGGDDIFSVVQFASTARPIYQGCKLAQAPRNLTMKGGGTTYIAGLKIADDVLTKDTTNSSIVMIFMSDGED-DNSQPLPKLTEIRKKYQNSGRRNFVCHTVAFG 8652          
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Match: A0A820NC86_9BILA (Hypothetical protein (Fragment) n=1 Tax=Rotaria sordida TaxID=392033 RepID=A0A820NC86_9BILA)

HSP 1 Score: 51.2 bits (121), Expect = 2.790e-5
Identity = 28/62 (45.16%), Postives = 38/62 (61.29%), Query Frame = 1
Query:    1 YNGFLDRRM--TDQGRHDTVSIVQFDHGARVTCQASPIDSA-PKNLSMKGGGTCFAGAMVQA 177
            YN  L++R+    Q   D +SIVQFDH ARV C ASP+ +  P+   M GG T F+ A+ +A
Sbjct:   50 YNMCLEKRLEIAQQLSKDFISIVQFDHDARVICSASPLSNGIPRLAHMTGGATSFSPALQKA 111          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12327.1920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A1E7FTR4_9STRA6.900e-2540.78VWFA domain-containing protein n=1 Tax=Fragilariop... [more]
A0A448ZCC6_9STRA6.220e-2341.21Chloroplast protein-transporting ATPase n=1 Tax=Ps... [more]
A0A7S4MJS1_9STRA3.900e-2239.78Hypothetical protein (Fragment) n=2 Tax=Odontella ... [more]
A0A0D2MDD5_9CHLO4.920e-2038.89VWFA domain-containing protein n=1 Tax=Monoraphidi... [more]
A0A7S2E4I8_9STRA1.630e-1737.29Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A815I2P8_9BILA5.850e-1433.70Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A820IIF9_9BILA1.100e-1336.84Hypothetical protein (Fragment) n=1 Tax=Rotaria sp... [more]
A0A818VLT5_9BILA4.370e-1240.00Hypothetical protein n=1 Tax=Adineta steineri TaxI... [more]
A0A820NC86_9BILA2.790e-545.16Hypothetical protein (Fragment) n=1 Tax=Rotaria so... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12327contigL-elsbetiae_contig12327:1570..2100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size507
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.6910954-UTR-L-elsbetiae_contig12327:1569..15931622815429.6910954-UTR-L-elsbetiae_contig12327:1569..1593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12327 1570..1593 +
1691682894.078427-UTR-L-elsbetiae_contig12327:1569..15931691682894.078427-UTR-L-elsbetiae_contig12327:1569..1593Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12327 1570..1593 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.7021909-CDS-L-elsbetiae_contig12327:1593..21001622815429.7021909-CDS-L-elsbetiae_contig12327:1593..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12327 1594..2100 +
1691682894.087364-CDS-L-elsbetiae_contig12327:1593..21001691682894.087364-CDS-L-elsbetiae_contig12327:1593..2100Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12327 1594..2100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12327.1920.1prot_L-elsbetiae_contig12327.1920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12327 1594..2100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12327.1920.1

>prot_L-elsbetiae_contig12327.1920.1 ID=prot_L-elsbetiae_contig12327.1920.1|Name=mRNA_L-elsbetiae_contig12327.1920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=169bp
MTDQGRHDTVSIVQFDHGARVTCQASPIDSAPKNLSMKGGGTCFAGAMVQ
AQRVLRKDHASRSAQLVFMSDGEAFDAHEAAGTLSSIVNERQNIGVEVIA
FGDDANMIALGLIANAGRTTVTAAAAGGLTNVFVNIARGASAASQELYEE
ICKRIAEEVSTQLMLEYL*
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mRNA from alignment at L-elsbetiae_contig12327:1570..2100+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12327.1920.1 ID=mRNA_L-elsbetiae_contig12327.1920.1|Name=mRNA_L-elsbetiae_contig12327.1920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=531bp|location=Sequence derived from alignment at L-elsbetiae_contig12327:1570..2100+ (Laminarionema elsbetiae ELsaHSoW15)
TACAACGGCTTCCTGGACAGGCGCATGACAGACCAAGGCCGCCACGACAC CGTGTCCATCGTGCAATTCGACCATGGCGCTCGGGTTACCTGCCAAGCAT CTCCAATAGACAGCGCGCCGAAAAATCTTTCAATGAAAGGAGGAGGCACT TGTTTCGCGGGTGCGATGGTGCAAGCTCAACGAGTACTGAGGAAGGATCA CGCTTCAAGATCAGCCCAGCTCGTGTTTATGTCCGACGGCGAGGCTTTCG ATGCCCACGAGGCGGCAGGTACACTGTCTAGCATTGTCAACGAACGGCAG AACATCGGAGTCGAGGTCATCGCGTTCGGTGACGATGCTAATATGATAGC TCTGGGTTTGATCGCCAATGCTGGAAGGACCACCGTGACTGCCGCTGCCG CCGGAGGTCTGACTAATGTTTTCGTTAACATCGCCCGTGGTGCCTCAGCG GCCAGCCAGGAGCTATACGAGGAAATTTGTAAACGCATCGCTGAGGAGGT CAGCACCCAGCTCATGCTAGAATATTTGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12327:1570..2100+

>mRNA_L-elsbetiae_contig12327.1920.1 ID=mRNA_L-elsbetiae_contig12327.1920.1|Name=mRNA_L-elsbetiae_contig12327.1920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1014bp|location=Sequence derived from alignment at L-elsbetiae_contig12327:1570..2100+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAGACCAAGGCCGCCACGACACCGTGTCCATCGTGCAATTCGACCA
TGGCGCTCGGGTTACCTGCCAAGCATCTCCAATAGACAGCGCGCCGAAAA
ATCTTTCAATGAAAGGAGGAGGCACTTGTTTCGCGGGTGCGATGGTGCAA
GCTCAACGAGTACTGAGGAAGGATCACGCTTCAAGATCAGCCCAGCTCGT
GTTTATGTCCGACGGCGAGGCTTTCGATGCCCACGAGGCGGCAGGTACAC
TGTCTAGCATTGTCAACGAACGGCAGAACATCGGAGTCGAGGTCATCGCG
TTCGGTGACGATGCTAATATGATAGCTCTGGGTTTGATCGCCAATGCTGG
AAGGACCACCGTGACTGCCGCTGCCGCCGGAGGTCTGACTAATGTTTTCG
TTAACATCGCCCGTGGTGCCTCAGCGGCCAGCCAGGAGCTATACGAGGAA
ATTTGTAAACGCATCGCTGAGGAGGTCAGCACCCAGCTCATGCTAGAATA
TTTGTAGATGACAGACCAAGGCCGCCACGACACCGTGTCCATCGTGCAAT
TCGACCATGGCGCTCGGGTTACCTGCCAAGCATCTCCAATAGACAGCGCG
CCGAAAAATCTTTCAATGAAAGGAGGAGGCACTTGTTTCGCGGGTGCGAT
GGTGCAAGCTCAACGAGTACTGAGGAAGGATCACGCTTCAAGATCAGCCC
AGCTCGTGTTTATGTCCGACGGCGAGGCTTTCGATGCCCACGAGGCGGCA
GGTACACTGTCTAGCATTGTCAACGAACGGCAGAACATCGGAGTCGAGGT
CATCGCGTTCGGTGACGATGCTAATATGATAGCTCTGGGTTTGATCGCCA
ATGCTGGAAGGACCACCGTGACTGCCGCTGCCGCCGGAGGTCTGACTAAT
GTTTTCGTTAACATCGCCCGTGGTGCCTCAGCGGCCAGCCAGGAGCTATA
CGAGGAAATTTGTAAACGCATCGCTGAGGAGGTCAGCACCCAGCTCATGC
TAGAATATTTGTAG
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