mRNA_L-elsbetiae_contig1232.1915.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1232.1915.1
Unique NamemRNA_L-elsbetiae_contig1232.1915.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1232.1915.1 vs. uniprot
Match: A0A6H5KI54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KI54_9PHAE)

HSP 1 Score: 147 bits (370), Expect = 2.690e-38
Identity = 94/173 (54.34%), Postives = 107/173 (61.85%), Query Frame = 1 
Query:  103 MVLVWRLLVLAL---LAASTV--VEAFALVASSPGARVTSPAPTRLRCYAGAAAATRSAARPVFPCR-GRVAGRSAWARSA----RADDDDDNNDKIDVLTGSGLRGVDTSNLTGNDKRDADWFQRTAEREASGGLQWFEDPAVYIGLCLFVPVVILVWGVLNCYIPGFCAAT 591
            +VLVWRL +L L   L+ ST   VEAF     +PGA     A    R   GA     SA  P FPCR    A R++WA  A       +DDD+ D+ID+LTGSGLRGVDTS LTGN+KRDADWF RT  RE    L WFEDP  Y+GLCL VPVV LVWG  NCY+PG C AT
Sbjct:    2 VVLVWRLQLLPLFLLLSFSTRDGVEAFTFTRPNPGAARARAAALPPRV--GAPRTLASAGPPFFPCRVAAAAERNSWATRATKRGNTSNDDDDIDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGAFNCYVPGICPAT 168
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BLAST of mRNA_L-elsbetiae_contig1232.1915.1 vs. uniprot
Match: D7G1A0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G1A0_ECTSI)

HSP 1 Score: 144 bits (362), Expect = 6.970e-38
Identity = 74/114 (64.91%), Postives = 83/114 (72.81%), Query Frame = 1 
Query:  259 SAARPVFPCR-GRVAGRSAWARSA--RADDDDDNNDKIDVLTGSGLRGVDTSNLTGNDKRDADWFQRTAEREASGGLQWFEDPAVYIGLCLFVPVVILVWGVLNCYIPGFCAAT 591
            SA  P FPCR    A RS+WA SA  R  + DD+ D+ID+LTGSGLRGVDTS LTGN+KRDADWF RT  RE    L WFEDP  Y+GLCL VPVV LVWG LNCY+PG C +T
Sbjct:    3 SAGPPFFPCRVAAAAERSSWATSATKRGKEGDDDGDRIDMLTGSGLRGVDTSKLTGNEKRDADWFLRTNSRE----LVWFEDPVFYLGLCLIVPVVGLVWGALNCYVPGICPST 112
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1232.1915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KI54_9PHAE2.690e-3854.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G1A0_ECTSI6.970e-3864.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1232contigL-elsbetiae_contig1232:8196..10479 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-12_005270.1
Exons2
Model size1480
Cds size495
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1232.1915.1prot_L-elsbetiae_contig1232.1915.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1232 9102..9596 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.187778-UTR-L-elsbetiae_contig1232:8195..82361622815429.187778-UTR-L-elsbetiae_contig1232:8195..8236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 8196..8236 +
1691682893.7893848-UTR-L-elsbetiae_contig1232:8195..82361691682893.7893848-UTR-L-elsbetiae_contig1232:8195..8236Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 8196..8236 +
1622815429.1992686-UTR-L-elsbetiae_contig1232:9040..91011622815429.1992686-UTR-L-elsbetiae_contig1232:9040..9101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 9041..9101 +
1691682893.8018184-UTR-L-elsbetiae_contig1232:9040..91011691682893.8018184-UTR-L-elsbetiae_contig1232:9040..9101Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 9041..9101 +
1622815429.2237535-UTR-L-elsbetiae_contig1232:9596..104791622815429.2237535-UTR-L-elsbetiae_contig1232:9596..10479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 9597..10479 +
1691682893.8193588-UTR-L-elsbetiae_contig1232:9596..104791691682893.8193588-UTR-L-elsbetiae_contig1232:9596..10479Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1232 9597..10479 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815429.213109-CDS-L-elsbetiae_contig1232:9101..95961622815429.213109-CDS-L-elsbetiae_contig1232:9101..9596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1232 9102..9596 +
1691682893.8112338-CDS-L-elsbetiae_contig1232:9101..95961691682893.8112338-CDS-L-elsbetiae_contig1232:9101..9596Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1232 9102..9596 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1232.1915.1

>prot_L-elsbetiae_contig1232.1915.1 ID=prot_L-elsbetiae_contig1232.1915.1|Name=mRNA_L-elsbetiae_contig1232.1915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=165bp
MVLVWRLLVLALLAASTVVEAFALVASSPGARVTSPAPTRLRCYAGAAAA
TRSAARPVFPCRGRVAGRSAWARSARADDDDDNNDKIDVLTGSGLRGVDT
SNLTGNDKRDADWFQRTAEREASGGLQWFEDPAVYIGLCLFVPVVILVWG
VLNCYIPGFCAATF*
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mRNA from alignment at L-elsbetiae_contig1232:8196..10479+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1232.1915.1 ID=mRNA_L-elsbetiae_contig1232.1915.1|Name=mRNA_L-elsbetiae_contig1232.1915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2284bp|location=Sequence derived from alignment at L-elsbetiae_contig1232:8196..10479+ (Laminarionema elsbetiae ELsaHSoW15)
CCCCCAGCCCCGCGGTCAAGCAGCAGCAAGCAAGTGTGACGGTAGGTCCA
AGGGTCAAAACGTCAAAACACGGGCGGTTAATAACCTATTGGCACCACGG
TGTTTCCCAGAGCCTAAGGGTTATTGCGTGCATTAGCGGGGCAGCGGGGG
TGGATCATGTTCCCCGGGTCCTACGTAGTTACGTGTAGAGGAGCACACCT
CTAGCTTCGGCCAACCCCTGTGCATTCCGTTGGTACTCGGTTACGGCAGT
TGCACTGCAGAAGCCCTGTCTGTCGGAATAGTTCTCTGTCTTTGGGTTGT
ATGTACGCAGGAATCCCACCTTCCCGGGGGGAGGTGCACAAACTGACCGG
CCGTATCCACCATACGGCCCGACGAGCTATGCTACACGCCGCCTTTCCGT
TTGGCCAACCCCGAGCCCTTTTCTGCGTGATGATCCCCCCCCCGACCGTC
ACTCAATTGTGCGAATCCTGTGTCCCGATTGGTGGGCTACGGTGGGGGGG
GTAGCATCCTTACCTATGTAGATACACCCGTGGGATGTTTCTACGGTAGT
ACTAAACGCTGCTAACCCTTACCTAAGCCTAACCATATGTTTCACTACTT
GTGTAGACCCGACTAGCATAGATATGTGTATCTAAACGCTGCTCCTACAG
ACTGCAGGTCCGTTCGGGCGGAGGTTCCCGGCGCCTCGCCCGGTTTGTGT
CTGATTGTCTGGGATCTGGAAGTTGAAACTGTAGCTTGTTTTATCTGGTC
TGTTTGTCTACTGGGCGGGAAACTAACATTTCCGCACGCCTTCGCTCAAA
ATATTGCTGTGCGCATATGTATGGAATTTACCTCTCTTTACACAGATAGG
GAGTATCTAGATAGGAGCTCCACTCGAGATCTCCACTCGGCCGCGCACCC
CATACAATGGTGCTCGTGTGGAGACTGCTTGTGCTGGCGCTCCTAGCGGC
TTCCACCGTCGTCGAAGCATTCGCACTCGTGGCGTCAAGCCCCGGCGCGC
GTGTGACCTCGCCCGCGCCCACCCGCTTGCGGTGCTACGCGGGGGCGGCG
GCGGCGACGCGGTCGGCGGCCAGGCCGGTGTTCCCGTGCAGGGGACGGGT
GGCGGGACGAAGTGCGTGGGCGAGGAGCGCAAGGGCGGACGACGACGACG
ACAACAACGACAAGATTGACGTCCTCACCGGGAGCGGCTTGCGCGGGGTC
GACACGAGCAATCTGACCGGAAACGACAAGAGGGACGCCGATTGGTTCCA
GCGCACGGCGGAGCGCGAGGCGAGTGGCGGCCTGCAGTGGTTCGAAGACC
CCGCGGTCTACATCGGCCTGTGCTTGTTCGTCCCGGTGGTGATCCTTGTC
TGGGGCGTGCTGAACTGCTACATACCGGGTTTCTGCGCCGCCACTTTTTA
AGATGGCAGACATAGATACCGCGTTGTTGGGGGCGGAGGGGGGGGGGGTT
GAGTAACTGACGAGGCGAGTTTTGATTCGTTCGGGTTGATTTGTTAAGTG
CCAAAGTAACTTTTATCAGAATTGAAGCTGTGCAGGGATTTGAGGAGCAT
TGAGGAGCCGTCCCTGACTGTGTAGAACCGGGTAGACAACAAGCTCTCGG
CGCTATGTATAGACTCTCAGGCTTTCTTTATGGGTTCCGGGAGAGGGGTT
GGGGGAAGAAGAGGAAACGAGGAAGAGAACGACACGAGTGAGGTTGTTTA
CGACTATTTCGGCGTGCTGTTTTTTTTCTCTGCTGCATTGCTTGTCGAAA
TTGCAGATGACGTCTGTACCGTCTGTACTATAGGTAAGAGCGGCGATGGG
CAACAGCAGTTACGAAATACACTCAAGTTTGCGTTTAGCAGCGGTAGTTG
AACGGTCAAGTTATGTGCCGAGGTAGCGCTAGCAGTCCGATGCTCACACC
GGCGGATGCTCGGAATTGCTCCGTGTGTATATATTCAAGTGATTAAATCG
CAGCGCGTGCGATGATTTTTGGTTGTTGTTTGTGCCGCAACGACGAGTTC
GCTGGTGGGATCGGCCGACGGTACAAATTCCGTTGATGTGCGAGGGTTGA
GACGCAGAGAACGGGTACGGGTATGTGATGGACGGTGTAGAGAGGGGAGG
GGAGGCGTGTGGTCCACCCCATCATCTAGAGTCGAAGTCGCGGTATGTAG
ATCTACGCCAACAACCCAGCCAGCAGAGCGGGAGGTGACATGTATCCGAG
TTCTGCTCCATCGGATACCCCTGTCCGGGCTATTGAGGCTGACGTCGTTG
CGTGTGTCGGTGAAAGTTGAAGGTGTGTGGCGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1232:8196..10479+

>mRNA_L-elsbetiae_contig1232.1915.1 ID=mRNA_L-elsbetiae_contig1232.1915.1|Name=mRNA_L-elsbetiae_contig1232.1915.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=990bp|location=Sequence derived from alignment at L-elsbetiae_contig1232:8196..10479+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTGCTCGTGTGGAGACTGCTTGTGCTGGCGCTCCTAGCGGCTTCCAC
CGTCGTCGAAGCATTCGCACTCGTGGCGTCAAGCCCCGGCGCGCGTGTGA
CCTCGCCCGCGCCCACCCGCTTGCGGTGCTACGCGGGGGCGGCGGCGGCG
ACGCGGTCGGCGGCCAGGCCGGTGTTCCCGTGCAGGGGACGGGTGGCGGG
ACGAAGTGCGTGGGCGAGGAGCGCAAGGGCGGACGACGACGACGACAACA
ACGACAAGATTGACGTCCTCACCGGGAGCGGCTTGCGCGGGGTCGACACG
AGCAATCTGACCGGAAACGACAAGAGGGACGCCGATTGGTTCCAGCGCAC
GGCGGAGCGCGAGGCGAGTGGCGGCCTGCAGTGGTTCGAAGACCCCGCGG
TCTACATCGGCCTGTGCTTGTTCGTCCCGGTGGTGATCCTTGTCTGGGGC
GTGCTGAACTGCTACATACCGGGTTTCTGCGCCGCCACTTTTTAAATGGT
GCTCGTGTGGAGACTGCTTGTGCTGGCGCTCCTAGCGGCTTCCACCGTCG
TCGAAGCATTCGCACTCGTGGCGTCAAGCCCCGGCGCGCGTGTGACCTCG
CCCGCGCCCACCCGCTTGCGGTGCTACGCGGGGGCGGCGGCGGCGACGCG
GTCGGCGGCCAGGCCGGTGTTCCCGTGCAGGGGACGGGTGGCGGGACGAA
GTGCGTGGGCGAGGAGCGCAAGGGCGGACGACGACGACGACAACAACGAC
AAGATTGACGTCCTCACCGGGAGCGGCTTGCGCGGGGTCGACACGAGCAA
TCTGACCGGAAACGACAAGAGGGACGCCGATTGGTTCCAGCGCACGGCGG
AGCGCGAGGCGAGTGGCGGCCTGCAGTGGTTCGAAGACCCCGCGGTCTAC
ATCGGCCTGTGCTTGTTCGTCCCGGTGGTGATCCTTGTCTGGGGCGTGCT
GAACTGCTACATACCGGGTTTCTGCGCCGCCACTTTTTAA
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