mRNA_L-elsbetiae_contig1230.1905.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1230.1905.1
Unique NamemRNA_L-elsbetiae_contig1230.1905.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1230.1905.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1230contigL-elsbetiae_contig1230:11678..12048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size371
Cds size336
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1230.1905.1prot_L-elsbetiae_contig1230.1905.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1230 11712..12047 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.4807022-UTR-L-elsbetiae_contig1230:11677..117111622815428.4807022-UTR-L-elsbetiae_contig1230:11677..11711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 11678..11711 +
1691682893.4129977-UTR-L-elsbetiae_contig1230:11677..117111691682893.4129977-UTR-L-elsbetiae_contig1230:11677..11711Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 11678..11711 +
1622815428.5303438-UTR-L-elsbetiae_contig1230:12047..120481622815428.5303438-UTR-L-elsbetiae_contig1230:12047..12048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 12048..12048 +
1691682893.4301066-UTR-L-elsbetiae_contig1230:12047..120481691682893.4301066-UTR-L-elsbetiae_contig1230:12047..12048Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 12048..12048 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.5200381-CDS-L-elsbetiae_contig1230:11711..120471622815428.5200381-CDS-L-elsbetiae_contig1230:11711..12047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1230 11712..12047 +
1691682893.4217603-CDS-L-elsbetiae_contig1230:11711..120471691682893.4217603-CDS-L-elsbetiae_contig1230:11711..12047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1230 11712..12047 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1230.1905.1

>prot_L-elsbetiae_contig1230.1905.1 ID=prot_L-elsbetiae_contig1230.1905.1|Name=mRNA_L-elsbetiae_contig1230.1905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=112bp
MVALSCYCPTSCAFRCGNGRVSRSFGTPPIIAPFLYDVLSLRINETLYVI
GPLGQMPRVVTHWQRTYGIPFSSLTLTSKSVLMSFLAFACVEAGVVRRQQ
VHFTQRQPKRQ*
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mRNA from alignment at L-elsbetiae_contig1230:11678..12048+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1230.1905.1 ID=mRNA_L-elsbetiae_contig1230.1905.1|Name=mRNA_L-elsbetiae_contig1230.1905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=371bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:11678..12048+ (Laminarionema elsbetiae ELsaHSoW15)
CCTATACCTCGTCGCGCCGCGGGCGTTGAACCTCATGGTAGCACTCAGTT
GCTACTGTCCTACCTCGTGTGCCTTTCGCTGTGGGAATGGCCGCGTCTCC
AGGTCTTTCGGGACTCCCCCAATCATAGCCCCGTTTCTTTACGACGTACT
ATCCCTTCGGATCAATGAAACCCTGTATGTCATTGGTCCCCTCGGACAAA
TGCCACGCGTAGTAACGCACTGGCAGCGCACGTACGGAATACCCTTCAGC
TCACTCACGCTTACATCTAAAAGCGTCTTGATGTCGTTTTTAGCTTTCGC
ATGCGTGGAAGCAGGGGTTGTGCGCAGACAGCAAGTGCACTTTACGCAGC
GGCAGCCAAAAAGGCAATAAT
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1230:11678..12048+

>mRNA_L-elsbetiae_contig1230.1905.1 ID=mRNA_L-elsbetiae_contig1230.1905.1|Name=mRNA_L-elsbetiae_contig1230.1905.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=672bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:11678..12048+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGTAGCACTCAGTTGCTACTGTCCTACCTCGTGTGCCTTTCGCTGTGG
GAATGGCCGCGTCTCCAGGTCTTTCGGGACTCCCCCAATCATAGCCCCGT
TTCTTTACGACGTACTATCCCTTCGGATCAATGAAACCCTGTATGTCATT
GGTCCCCTCGGACAAATGCCACGCGTAGTAACGCACTGGCAGCGCACGTA
CGGAATACCCTTCAGCTCACTCACGCTTACATCTAAAAGCGTCTTGATGT
CGTTTTTAGCTTTCGCATGCGTGGAAGCAGGGGTTGTGCGCAGACAGCAA
GTGCACTTTACGCAGCGGCAGCCAAAAAGGCAATAAATGGTAGCACTCAG
TTGCTACTGTCCTACCTCGTGTGCCTTTCGCTGTGGGAATGGCCGCGTCT
CCAGGTCTTTCGGGACTCCCCCAATCATAGCCCCGTTTCTTTACGACGTA
CTATCCCTTCGGATCAATGAAACCCTGTATGTCATTGGTCCCCTCGGACA
AATGCCACGCGTAGTAACGCACTGGCAGCGCACGTACGGAATACCCTTCA
GCTCACTCACGCTTACATCTAAAAGCGTCTTGATGTCGTTTTTAGCTTTC
GCATGCGTGGAAGCAGGGGTTGTGCGCAGACAGCAAGTGCACTTTACGCA
GCGGCAGCCAAAAAGGCAATAA
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