mRNA_L-elsbetiae_contig1230.1904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI) HSP 1 Score: 107 bits (268), Expect = 2.530e-25 Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840 KRWYTST ELQL SL++CR CR PTL V V G TP +LWSPP + P T SSKVR+ RVPVVRA L W S++ +Q AA+E W S + G + V WP Sbjct: 26 KRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQAL-PNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWP 136
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE) HSP 1 Score: 90.9 bits (224), Expect = 6.650e-17 Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITG----VAWP 840 KRWY STLELQL SL+LCR CR L V V +TPR+LWS + + P T S + I+ RVPVVRA L W S++ L+ AA+E W S + G + C++ V WP Sbjct: 28 KRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSS-RTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSS---CVSSLGSEVVWP 139
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE) HSP 1 Score: 88.2 bits (217), Expect = 2.830e-16 Identity = 52/114 (45.61%), Postives = 65/114 (57.02%), Query Frame = -1 Query: 508 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITC---RVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAW 840 KRWY STLELQL SLE C CRR+PTL V V +TPR+LWSP K H T + R C RVP V+A L W ++V LQ++AVE S R G++ + + W Sbjct: 34 KRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSH----ATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFW 143
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI) HSP 1 Score: 84.3 bits (207), Expect = 1.090e-15 Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840 KRWY STLELQL SLELC CR L V V TP TLWS + + P S +V + RVP V+A C W +D Q AA E + +R+ G +F + V WP Sbjct: 106 KRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSS-RTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWP 216
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE) HSP 1 Score: 84.3 bits (207), Expect = 1.180e-14 Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840 KRWY STLELQL SLE+C CRR+ TL V V +TP +LW P + H S KV I+ RVPVV+AF L W + V Q +A E GS R + + + WP Sbjct: 26 KRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTT-NNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWP 136
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE) HSP 1 Score: 82.4 bits (202), Expect = 4.530e-14 Identity = 53/140 (37.86%), Postives = 69/140 (49.29%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSP----PKPHKVEPGTGSS-----------------------KVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNEC-ITGVAWP 840 KRWYTSTLEL+LASLE CR CRR+PT+ V V TP +LWSP + H T + K RI+ RVPV +A L W ++ LQ AVE W L+ + ++ + + VAWP Sbjct: 26 KRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWT-KLEFLQLRESLSPSDLVSVAWP 164
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE) HSP 1 Score: 79.3 bits (194), Expect = 3.550e-13 Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = -1 Query: 568 RWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSS----KVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVG 837 RW+TSTL +QLASLE CR R IPT+ + V R PR+LW K G K R RVP++RA L W S++ LQS AVE W G Sbjct: 4 RWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTG 97
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 1.010e-12 Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -1 Query: 643 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVV 840 KR YTSTLEL LASL++CR R TL V V +TPR+ WSPPK ++ P GSSK+R++ RVPVV Sbjct: 39 KRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPK-VQLRPDEGSSKIRLSSRVPVV 103
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE) HSP 1 Score: 75.9 bits (185), Expect = 5.830e-12 Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = -1 Query: 505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSP---PKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840 KRWYTST ELQ ASLE C CR+ TLR+ V +TPRTL + P PH P RVP +RA ++WN L+S + + R+ FG AF + VAWP Sbjct: 5 KRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRP--------CRTRVPRLRARRVIWNMPTATELKSPIFA--LKDVVRLDFGPAFEGSLESVAWP 109
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE) HSP 1 Score: 74.7 bits (182), Expect = 1.550e-11 Identity = 44/89 (49.44%), Postives = 50/89 (56.18%), Query Frame = -1 Query: 574 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQW 840 KRWYTSTL+LQLASLE C CR P L V V TP TLWS + P G+S RVP V+A L W R + L SA+ E W Sbjct: 26 KRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSL---GQANPTAGTST-----RVPAVQAVGLTWARPTESPLGSASSELW 106 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 24
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1230.1904.1 >prot_L-elsbetiae_contig1230.1904.1 ID=prot_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp MGWLKLPRNSCCREPGHTTPMMAWSNRSPNDSCRREAGHTIPAMGWSKAFback to top mRNA from alignment at L-elsbetiae_contig1230:7270..8109+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1230.1904.1 ID=mRNA_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:7270..8109+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1230:7270..8109+ >mRNA_L-elsbetiae_contig1230.1904.1 ID=mRNA_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:7270..8109+ (Laminarionema elsbetiae ELsaHSoW15)back to top |