mRNA_L-elsbetiae_contig1230.1904.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1230.1904.1
Unique NamemRNA_L-elsbetiae_contig1230.1904.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: D7G7F9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7F9_ECTSI)

HSP 1 Score: 107 bits (268), Expect = 2.530e-25
Identity = 57/112 (50.89%), Postives = 68/112 (60.71%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840
            KRWYTST ELQL SL++CR CR  PTL V V G TP +LWSPP    + P T SSKVR+  RVPVVRA  L W  S++  +Q AA+E W  S +    G      +  V WP
Sbjct:   26 KRWYTSTTELQLGSLDICRACRSTPTLHVRVTGGTPTSLWSPPTVQAL-PNTQSSKVRVVSRVPVVRALRLTWAFSMETLVQRAAIELWSRSERLEMVGPLCAASLGSVVWP 136          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5LIJ3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LIJ3_9PHAE)

HSP 1 Score: 90.9 bits (224), Expect = 6.650e-17
Identity = 52/116 (44.83%), Postives = 67/116 (57.76%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITG----VAWP 840
            KRWY STLELQL SL+LCR CR    L V V  +TPR+LWS  +  +  P T S  + I+ RVPVVRA  L W  S++  L+ AA+E W  S +    G +   C++     V WP
Sbjct:   28 KRWYASTLELQLTSLDLCRACRTTSILHVHVDDQTPRSLWSS-RTAQTRPNTRSWNLHISSRVPVVRALRLTWALSMEALLRKAAIELWTWSERLELLGSS---CVSSLGSEVVWP 139          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KLV1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLV1_9PHAE)

HSP 1 Score: 88.2 bits (217), Expect = 2.830e-16
Identity = 52/114 (45.61%), Postives = 65/114 (57.02%), Query Frame = -1
Query:  508 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITC---RVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAW 840
            KRWY STLELQL SLE C  CRR+PTL V V  +TPR+LWSP K H     T   + R  C   RVP V+A  L W   ++V LQ++AVE    S  R   G++    +  + W
Sbjct:   34 KRWYASTLELQLVSLEFCGACRRVPTLHVRVDRQTPRSLWSPCKSH----ATTKKRSREACVSNRVPAVQASGLTWALDMEVLLQTSAVELRSRSKYRRVSGNSSTASLGSMFW 143          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: D7FTK8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTK8_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.090e-15
Identity = 48/112 (42.86%), Postives = 59/112 (52.68%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840
            KRWY STLELQL SLELC  CR    L V V   TP TLWS  +  +  P   S +V  + RVP V+A C  W   +D   Q AA E    + +R+  G +F   +  V WP
Sbjct:  106 KRWYVSTLELQLVSLELCGACRSAQLLHVFVREDTPPTLWSS-RTSRTTPSQRSPEVCTSNRVPAVQALCWTWALPMDRLPQRAAAEPQPVTERRLQDGHSFAASVESVVWP 216          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KNI6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNI6_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 1.180e-14
Identity = 50/112 (44.64%), Postives = 62/112 (55.36%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840
            KRWY STLELQL SLE+C  CRR+ TL V V  +TP +LW P + H       S KV I+ RVPVV+AF L W   + V  Q +A E   GS  R +   +    +    WP
Sbjct:   26 KRWYVSTLELQLVSLEVCGACRRVQTLHVRVKPQTPPSLWFPSQNHTTT-NNRSPKVCISSRVPVVQAFGLTWALPMGVLQQRSATEVRSGSGCRRANTHSSAASLESAVWP 136          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KXX4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXX4_9PHAE)

HSP 1 Score: 82.4 bits (202), Expect = 4.530e-14
Identity = 53/140 (37.86%), Postives = 69/140 (49.29%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSP----PKPHKVEPGTGSS-----------------------KVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNEC-ITGVAWP 840
            KRWYTSTLEL+LASLE CR CRR+PT+ V V   TP +LWSP     + H     T +                        K RI+ RVPV +A  L W    ++ LQ  AVE W   L+ +   ++ +   +  VAWP
Sbjct:   26 KRWYTSTLELRLASLETCRACRRVPTIHVRVDANTPPSLWSPHAMPTRAHTRSSKTRAXXXXXXXXXXXXXXXXXXXXXXXXKARISSRVPVGQALGLTWALPTEILLQGVAVELWT-KLEFLQLRESLSPSDLVSVAWP 164          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5JL88_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JL88_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 3.550e-13
Identity = 44/94 (46.81%), Postives = 53/94 (56.38%), Query Frame = -1
Query:  568 RWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSS----KVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVG 837
            RW+TSTL +QLASLE CR  R IPT+ + V  R PR+LW   K        G      K R   RVP++RA  L W  S++  LQS AVE W G
Sbjct:    4 RWFTSTLNIQLASLEFCRASRSIPTIALHVDSRIPRSLWDGRKSQTPSSTRGLEIRCWKARPLSRVPLIRASRLNWGLSMETLLQSTAVELWTG 97          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5KVM8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVM8_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 1.010e-12
Identity = 39/66 (59.09%), Postives = 48/66 (72.73%), Query Frame = -1
Query:  643 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVV 840
            KR YTSTLEL LASL++CR  R   TL V V  +TPR+ WSPPK  ++ P  GSSK+R++ RVPVV
Sbjct:   39 KRSYTSTLELPLASLDICRAGRSTSTLHVRVQYQTPRSFWSPPK-VQLRPDEGSSKIRLSSRVPVV 103          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5JYF0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 5.830e-12
Identity = 48/115 (41.74%), Postives = 60/115 (52.17%), Query Frame = -1
Query:  505 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSP---PKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQWVGSLKRISFGDAFNECITGVAWP 840
            KRWYTST ELQ ASLE C  CR+  TLR+ V  +TPRTL +    P PH   P           RVP +RA  ++WN      L+S      +  + R+ FG AF   +  VAWP
Sbjct:    5 KRWYTSTKELQQASLEFCIACRKYQTLRLRVDVQTPRTLLAAVDAPSPHSKRP--------CRTRVPRLRARRVIWNMPTATELKSPIFA--LKDVVRLDFGPAFEGSLESVAWP 109          
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Match: A0A6H5L1V9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V9_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.550e-11
Identity = 44/89 (49.44%), Postives = 50/89 (56.18%), Query Frame = -1
Query:  574 KRWYTSTLELQLASLELCRVCRRIPTLRVIVYGRTPRTLWSPPKPHKVEPGTGSSKVRITCRVPVVRAFCLVWNRSVDVWLQSAAVEQW 840
            KRWYTSTL+LQLASLE C  CR  P L V V   TP TLWS     +  P  G+S      RVP V+A  L W R  +  L SA+ E W
Sbjct:   26 KRWYTSTLQLQLASLEFCGACRSTPMLHVYVDAETPPTLWSL---GQANPTAGTST-----RVPAVQAVGLTWARPTESPLGSASSELW 106          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1230.1904.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 24
Match NameE-valueIdentityDescription
D7G7F9_ECTSI2.530e-2550.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5LIJ3_9PHAE6.650e-1744.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KLV1_9PHAE2.830e-1645.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FTK8_ECTSI1.090e-1542.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KNI6_9PHAE1.180e-1444.64Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KXX4_9PHAE4.530e-1437.86Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JL88_9PHAE3.550e-1346.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVM8_9PHAE1.010e-1259.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYF0_9PHAE5.830e-1241.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1V9_9PHAE1.550e-1149.44Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1230contigL-elsbetiae_contig1230:7270..8109 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-07_000950.2
Exons1
Model size840
Cds size486
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1230.1904.1prot_L-elsbetiae_contig1230.1904.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1230 7532..8017 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.4175994-UTR-L-elsbetiae_contig1230:7269..75311622815428.4175994-UTR-L-elsbetiae_contig1230:7269..7531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 7270..7531 +
1691682893.3790321-UTR-L-elsbetiae_contig1230:7269..75311691682893.3790321-UTR-L-elsbetiae_contig1230:7269..7531Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 7270..7531 +
1622815428.4442978-UTR-L-elsbetiae_contig1230:8017..81091622815428.4442978-UTR-L-elsbetiae_contig1230:8017..8109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 8018..8109 +
1691682893.4050226-UTR-L-elsbetiae_contig1230:8017..81091691682893.4050226-UTR-L-elsbetiae_contig1230:8017..8109Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1230 8018..8109 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815428.4319787-CDS-L-elsbetiae_contig1230:7531..80171622815428.4319787-CDS-L-elsbetiae_contig1230:7531..8017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1230 7532..8017 +
1691682893.3943322-CDS-L-elsbetiae_contig1230:7531..80171691682893.3943322-CDS-L-elsbetiae_contig1230:7531..8017Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1230 7532..8017 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1230.1904.1

>prot_L-elsbetiae_contig1230.1904.1 ID=prot_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=162bp
MGWLKLPRNSCCREPGHTTPMMAWSNRSPNDSCRREAGHTIPAMGWSKAF
PKDTARREDGHTTSLTWWLKVFPNDNACTNDGHATPVMHSLNASPNDILL
RDPTHCSTAALCSQTSTERFHTKQNARTTGTRHVMRTFELPVPGSTLCGL
GGDHKVRGVRP*
back to top

mRNA from alignment at L-elsbetiae_contig1230:7270..8109+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1230.1904.1 ID=mRNA_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=840bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:7270..8109+ (Laminarionema elsbetiae ELsaHSoW15)
GTTGAACTCACACCCAAACTCTAGCTGTTGAAGTAGGGCGGGCCACATTA TCCCGGCGATCGACTGGTTGAACCTACCAAGCATGCAAAATGATAGACGC TGGAGCGAGGCCGGCCACGCAACTCTGGTTATAGGCTGGTTGAAGCATAG GCCGAACGATAGCTGCCGCAGGGAGGCGGGCCACACGATTCCGGCGATGG GTTGATCGAAGCGGTCGCCAAACGATAGCTGCTGCAGAGAGGCTGGCCAC ACAACTCCGGCGATGGGCTGGTTGAAGCTGCCAAGGAATAGCTGTTGCAG GGAGCCGGGCCACACGACTCCGATGATGGCCTGGTCGAACAGGTCGCCAA ATGATAGCTGCCGCAGAGAGGCGGGCCACACGATTCCGGCGATGGGCTGG TCGAAGGCATTTCCGAAAGACACCGCTAGGAGAGAGGACGGCCACACCAC ATCGTTGACTTGGTGGTTGAAAGTCTTCCCGAATGACAACGCTTGTACGA ACGACGGCCACGCCACTCCAGTGATGCACTCGTTGAATGCGTCACCGAAC GATATCCTCTTGAGAGACCCTACCCACTGCTCGACGGCGGCACTCTGCAG CCAAACGTCCACCGAACGATTCCACACCAAGCAGAACGCCCGCACGACCG GCACGCGGCACGTGATGCGAACCTTCGAGCTGCCCGTACCTGGCTCCACC TTGTGTGGTTTGGGAGGAGACCACAAGGTGCGAGGTGTTCGACCGTAGAC AATCACACGCAGGGTCGGGATCCTCCTGCAAACCCTGCAGAGCTCCAGCG ATGCCAGCTGCAGCTCCAGCGTGGACGTGTACCACCGCTT
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1230:7270..8109+

>mRNA_L-elsbetiae_contig1230.1904.1 ID=mRNA_L-elsbetiae_contig1230.1904.1|Name=mRNA_L-elsbetiae_contig1230.1904.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=972bp|location=Sequence derived from alignment at L-elsbetiae_contig1230:7270..8109+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGGCTGGTTGAAGCTGCCAAGGAATAGCTGTTGCAGGGAGCCGGGCCA
CACGACTCCGATGATGGCCTGGTCGAACAGGTCGCCAAATGATAGCTGCC
GCAGAGAGGCGGGCCACACGATTCCGGCGATGGGCTGGTCGAAGGCATTT
CCGAAAGACACCGCTAGGAGAGAGGACGGCCACACCACATCGTTGACTTG
GTGGTTGAAAGTCTTCCCGAATGACAACGCTTGTACGAACGACGGCCACG
CCACTCCAGTGATGCACTCGTTGAATGCGTCACCGAACGATATCCTCTTG
AGAGACCCTACCCACTGCTCGACGGCGGCACTCTGCAGCCAAACGTCCAC
CGAACGATTCCACACCAAGCAGAACGCCCGCACGACCGGCACGCGGCACG
TGATGCGAACCTTCGAGCTGCCCGTACCTGGCTCCACCTTGTGTGGTTTG
GGAGGAGACCACAAGGTGCGAGGTGTTCGACCGTAGATGGGCTGGTTGAA
GCTGCCAAGGAATAGCTGTTGCAGGGAGCCGGGCCACACGACTCCGATGA
TGGCCTGGTCGAACAGGTCGCCAAATGATAGCTGCCGCAGAGAGGCGGGC
CACACGATTCCGGCGATGGGCTGGTCGAAGGCATTTCCGAAAGACACCGC
TAGGAGAGAGGACGGCCACACCACATCGTTGACTTGGTGGTTGAAAGTCT
TCCCGAATGACAACGCTTGTACGAACGACGGCCACGCCACTCCAGTGATG
CACTCGTTGAATGCGTCACCGAACGATATCCTCTTGAGAGACCCTACCCA
CTGCTCGACGGCGGCACTCTGCAGCCAAACGTCCACCGAACGATTCCACA
CCAAGCAGAACGCCCGCACGACCGGCACGCGGCACGTGATGCGAACCTTC
GAGCTGCCCGTACCTGGCTCCACCTTGTGTGGTTTGGGAGGAGACCACAA
GGTGCGAGGTGTTCGACCGTAG
back to top