mRNA_L-elsbetiae_contig12293.1895.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12293.1895.1
Unique NamemRNA_L-elsbetiae_contig12293.1895.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: D8LH69_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH69_ECTSI)

HSP 1 Score: 337 bits (864), Expect = 3.380e-112
Identity = 223/235 (94.89%), Postives = 229/235 (97.45%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTWA AQAAASDVGNWSTGGQASQAVS+ DLPSQT LK+RK+GQNSEAELRKR+VRAEVE+ ERRALDEKPATIARRYDEGGAGRG+DRLQLLLKEQGDVNLDDVKKYDD  XXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK
Sbjct:    1 MTTAHRPTWAPAQAAASDVGNWSTGGQASQAVSAHDLPSQTTLKFRKTGQNSEAELRKRDVRAEVEDSERRALDEKPATIARRYDEGGAGRGRDRLQLLLKEQGDVNLDDVKKYDDEDXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 235          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A836C8J3_9STRA (Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C8J3_9STRA)

HSP 1 Score: 149 bits (376), Expect = 4.960e-39
Identity = 141/241 (58.51%), Postives = 166/241 (68.88%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEK----PATIARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXX--ALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW  A   ++  GNW+TGG + Q  S+ D P    LK+R+ GQNSEAEL++R+++  +E  E  A +EK    PA +      G A  G D                       XXXXXXXXXXXXXXXXXXXXXXX  AL+KELEKIR+   XXXXXXXXXXXXXXXX  QEAAM+GN+LL+ + S+SQVKRRWNDDVVFKGQARTEP+ KKRFVNDTIR+DFHR FL KY+K
Sbjct:    1 MTTAHRPTWTPAVGTSNARGNWATGGLSWQ-FSAKDEPGHKKLKFRQLGQNSEAELKRRDLKTVLEAKEENAKEEKRTGRPAAV-----HGDAKGGDDAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEALQKELEKIRRXXXXXXXXXXXXXXXXXXXXXQEAAMSGNVLLSMAQSTSQVKRRWNDDVVFKGQARTEPQVKKRFVNDTIRSDFHRSFLKKYVK 235          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A7S2FJV3_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FJV3_9STRA)

HSP 1 Score: 144 bits (364), Expect = 2.660e-37
Identity = 124/240 (51.67%), Postives = 145/240 (60.42%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGR----GQDRLQLLLKEQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXAL-EKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW A +  ASD GNWS GG+ S   S  D+P  T LK R+  Q  +   R      E+E  E +ALDEK     R   E  +      G   L L  +E     ++  +KYDD  XXXXXXXXXXXXXXXXXXXXXX L ++ELEKI+ ERE                   +AA+ GN L+  +  SSQVKR+WNDDVVFK QARTEPE KKRFVNDTIRNDFHRRFL K+ K
Sbjct:    1 MTTAHRPTWVAGKGEASDYGNWSLGGKVSGQFSVKDMPGHTKLKMRQGEQIPDFVTRD-----ELESAEDKALDEKLKAKKRSALEDSSSSTVLGGAKPLMLKAEEVDTERIN--RKYDDGDXXXXXXXXXXXXXXXXXXXXXXELLQRELEKIKAEREKVRLEKEAEEAAIAEKTASDAALLGNPLMLGATKSSQVKRKWNDDVVFKNQARTEPEAKKRFVNDTIRNDFHRRFLAKFAK 233          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A8K1CHA0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CHA0_PYTOL)

HSP 1 Score: 140 bits (352), Expect = 1.800e-35
Identity = 128/242 (52.89%), Postives = 158/242 (65.29%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSS---QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA    ++ G W +GGQ SQ  S+ DLP  T LK R+ GQ +  E+  R++RAE+E  E++  +EK  +     D+        +L LL   + D     +K    KYDDA   XXXXXXXXXXXXXXXXXXX  L +ELEKI+KE  XXXXXXXXXX        +E  + GN L TQ+ S+S   ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKNE-GGWQSGGQVSQQFSARDLPGHTKLKIRQVGQGTANEIELRDLRAELEGREQQYEEEKGKSNNTAQDKLRRLEENKKLLLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXAELMRELEKIKKEXXXXXXXXXXXXREAAEKMAREEILQGNPL-TQAASASGTAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYVQ 240          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A2D4BX11_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BX11_PYTIN)

HSP 1 Score: 136 bits (342), Expect = 5.240e-34
Identity = 135/248 (54.44%), Postives = 163/248 (65.73%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATI------ARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXA-LEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNSSS--QVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA    S+ G W TGGQ SQ  S+ DLP  T LK R+ GQ +  E+  R++RAE+E  E++  +EK           RR +E        ++ LL   + D     +K    KYDDA   XXXXXXXXXXXXXXXXXXX A L +ELEKI+KE  XXXXXXXXXXXXXXXX  +E  + GN L     +S+  ++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KY++
Sbjct:    1 MTTAHRPTWHAAVGQKSE-GGWQTGGQVSQQFSARDLPGHTKLKLRQVGQGTANEVEARDLRAELEGREQQYEEEKSKNSDSVQARLRRLEE------NKKILLLGDAEADARESQLKSVASKYDDADDVXXXXXXXXXXXXXXXXXXXEAELMRELEKIKKEXXXXXXXXXXXXXXXXXXXXREEILQGNPLTAAQTASANAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLNKYVQ 241          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: K3WMS3_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WMS3_GLOUD)

HSP 1 Score: 135 bits (341), Expect = 6.950e-34
Identity = 120/240 (50.00%), Postives = 150/240 (62.50%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA   A++ G W  GG  S+  S+ DLP+   LKYR+ GQ +  E+   ++RAE+E  E +  +EK        D+        +L LL   + D     +K    KYDDA          XXXXXXXXXXXXX L +ELEKI++   XXXXXXXXXXXX      +   + GN LL QS+  S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL+KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGALSEQFSARDLPAHKKLKYRQVGQGTANEVELLDLRAELEGKEEKYEEEKGKKKDTALDKLRRLEENKKLLLLGDSEADARESQLKSIASKYDDADEIGDSDDSSXXXXXXXXXXXXXXLMRELEKIKRXXXXXXXXXXXXXXXASEQESRVEILQGNPLLQQSSGGSAKMKRRWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLSKYIQ 239          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: D0NV69_PHYIT (Uncharacterized protein n=23 Tax=Peronosporaceae TaxID=4777 RepID=D0NV69_PHYIT)

HSP 1 Score: 132 bits (332), Expect = 1.400e-32
Identity = 109/239 (45.61%), Postives = 138/239 (57.74%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLKEQGDVNLDDVK----KYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYI 702
            MTTAHRPTW AA    S+ G W  GG+ S  VS+ DLP+   LK R+ GQ +  E+   ++R E+E  E +   EK        D+        ++ LL   + D     +K    KY+DA        XXXXXXXXXXXXXXX L +ELEKI++ERE                + +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI
Sbjct:    1 MTTAHRPTWHAA-VGQSNEGGWHAGGKLSDQVSARDLPAHKRLKMRQVGQGTANEVELLDLREELERKEEKYEVEKGRKKDTAQDKLRRLEENKKILLLGDAEADAKESQLKEVASKYNDADDGAGSEAXXXXXXXXXXXXXXXELMRELEKIKQEREEERLRKEEEARKTVELQSREEILQGNPLTQQQAAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYI 238          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A485KPE0_9STRA (Aste57867_10048 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KPE0_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.890e-32
Identity = 116/243 (47.74%), Postives = 147/243 (60.49%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLK--EQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXA-LEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQS-----NSSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPTW AA    ++ G W+ GGQ S   S+ DLP QT LK R+ GQ +  EL  ++++ E+ E ER+  +EK   +     +    R ++   LLLK  E  D   D V KYDDA        XXXXXXXXXXXXXXX  L +ELEKI+KE  XXX X           +++E  + GN L +       + S+ +KR+WNDDVVFK Q+R EPETKKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTWHAAVGQKNE-GGWNAGGQVSMQFSARDLPGQTKLKTRQIGQGTVDELGMKDLKGELSERERKYEEEKGKEVDTAQQK--MLRLKENKMLLLKGDEWEDRAKDVVAKYDDADDDTRQDSXXXXXXXXXXXXXXXXXLMRELEKIKKEXXXXXLXKEMVDREVEENQRKEEILLGNPLTSAQARNIPSGSATIKRKWNDDVVFKNQSRNEPETKKRFINDTIRNDFHRRFLKTYIQ 240          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A3F2RN91_9STRA (Uncharacterized protein n=4 Tax=Peronosporaceae TaxID=4777 RepID=A0A3F2RN91_9STRA)

HSP 1 Score: 130 bits (327), Expect = 7.360e-32
Identity = 125/253 (49.41%), Postives = 151/253 (59.68%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQD----RLQLLLKEQ-----GDVNLDD--------VKKYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSNS-SSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTAHRPTW AA   A++ G W  GGQ S  VS+ DLP    LK R+ GQ +  E+   ++R E+E  E     EK             GR +D    +L+ L K +     GDV  D           KYDDA        XXXXXXXXXXXXXX  L +ELEKI++E  XXXXXXXXXXXX    + +E  + GN L  Q  + S+++KRRWNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL KYI+
Sbjct:    1 MTTAHRPTWHAAVGQANE-GGWQAGGQLSDQVSARDLPGHKHLKMRQVGQGTANEVELLDLRTELERKEETYEVEK-------------GRKKDTALEKLRRLEKNKKILLLGDVETDARESQLKNVASKYDDADDGGDSDGXXXXXXXXXXXXXXAELMRELEKIKQEXXXXXXXXXXXXXXVAEQQSREEVLQGNPLTQQQTAGSAKMKRRWNDDVVFKNQSRNEPEVKKRFINDTIRNDFHRRFLNKYIQ 239          
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Match: A0A067BVG0_SAPPC (Uncharacterized protein n=3 Tax=Saprolegniaceae TaxID=4764 RepID=A0A067BVG0_SAPPC)

HSP 1 Score: 129 bits (324), Expect = 1.850e-31
Identity = 111/239 (46.44%), Postives = 144/239 (60.25%), Query Frame = 1
Query:    1 MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQNSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLLK--EQGDVNLDDVKKYDDAXXXXXXXXXXXXXXXXXXXXXXXALEKELEKIRKEREXXXXXXXXXXXXXXXXRKQEAAMTGNILLTQSN--SSSQVKRRWNDDVVFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK 705
            MTTA RPT+ AA    ++ G W++GGQ S   S+ DLP  T LK R+ GQ +  EL +R++  E+ + ER+  ++K   +   + +    R +D   LLLK  E  D   D   KYDDA      XXXXXXXXXXXXXXX   L +ELEKI++ERE         XX     R ++  + GN L +      S+ +KR+WNDDVVFK Q+R EPE KKRF+NDTIRNDFHRRFL  YI+
Sbjct:    1 MTTAARPTFNAAMGKKNE-GGWNSGGQISMQFSARDLPGHTKLKTRQLGQGTSDELAERDLIGELTDRERKYEEDKLKEVD--FAQQKIMRLKDNKTLLLKGDEWEDRAKDVQTKYDDADDDVGDXXXXXXXXXXXXXXXEAELMRELEKIKREREEERLRKEQAXXDEEEKRAKDEVLMGNPLTSAMAPAGSATIKRKWNDDVVFKNQSRNEPELKKRFINDTIRNDFHRRFLKAYIQ 236          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12293.1895.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH69_ECTSI3.380e-11294.89Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836C8J3_9STRA4.960e-3958.51Pre-mRNA-splicing factor Cwf15/Cwc15 n=1 Tax=Tribo... [more]
A0A7S2FJV3_9STRA2.660e-3751.67Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A8K1CHA0_PYTOL1.800e-3552.89Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BX11_PYTIN5.240e-3454.44Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
K3WMS3_GLOUD6.950e-3450.00Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
D0NV69_PHYIT1.400e-3245.61Uncharacterized protein n=23 Tax=Peronosporaceae T... [more]
A0A485KPE0_9STRA3.890e-3247.74Aste57867_10048 protein n=1 Tax=Aphanomyces stella... [more]
A0A3F2RN91_9STRA7.360e-3249.41Uncharacterized protein n=4 Tax=Peronosporaceae Ta... [more]
A0A067BVG0_SAPPC1.850e-3146.44Uncharacterized protein n=3 Tax=Saprolegniaceae Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12293contigL-elsbetiae_contig12293:1507..5500 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.0
Seed ortholog evalue5.7e-92
Seed eggNOG ortholog2880.D8LH69
Preferred nameCWC15
KEGG koko:K09191,ko:K12863
KEGG Pathwayko03040,map03040
KEGG ModuleM00353,M00355
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0000974,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005737,GO:0005739,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071007,GO:0071013,GO:0071014,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1902494,GO:1990904
EggNOG free text desc.mRNA splicing, via spliceosome
EggNOG OGsKOG3228@1,KOG3228@2759
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03000,ko03021,ko03041
Ec32 ortholog descriptionPre-mRNA-splicing factor Cwf15/Cwc15
Ec32 orthologEc-24_000770.1
Exons6
Model size1224
Cds size708
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.9889693-CDS-L-elsbetiae_contig12293:1506..15821622815426.9889693-CDS-L-elsbetiae_contig12293:1506..1582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 1507..1582 +
1691682892.6418822-CDS-L-elsbetiae_contig12293:1506..15821691682892.6418822-CDS-L-elsbetiae_contig12293:1506..1582Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 1507..1582 +
1622815427.0022218-CDS-L-elsbetiae_contig12293:3047..32241622815427.0022218-CDS-L-elsbetiae_contig12293:3047..3224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 3048..3224 +
1691682892.6529207-CDS-L-elsbetiae_contig12293:3047..32241691682892.6529207-CDS-L-elsbetiae_contig12293:3047..3224Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 3048..3224 +
1622815427.016352-CDS-L-elsbetiae_contig12293:3568..37951622815427.016352-CDS-L-elsbetiae_contig12293:3568..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 3569..3795 +
1691682892.6626375-CDS-L-elsbetiae_contig12293:3568..37951691682892.6626375-CDS-L-elsbetiae_contig12293:3568..3795Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 3569..3795 +
1622815427.029776-CDS-L-elsbetiae_contig12293:4258..42971622815427.029776-CDS-L-elsbetiae_contig12293:4258..4297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4259..4297 +
1691682892.6726983-CDS-L-elsbetiae_contig12293:4258..42971691682892.6726983-CDS-L-elsbetiae_contig12293:4258..4297Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4259..4297 +
1622815427.0420718-CDS-L-elsbetiae_contig12293:4527..45921622815427.0420718-CDS-L-elsbetiae_contig12293:4527..4592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4528..4592 +
1691682892.684294-CDS-L-elsbetiae_contig12293:4527..45921691682892.684294-CDS-L-elsbetiae_contig12293:4527..4592Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4528..4592 +
1622815427.0559173-CDS-L-elsbetiae_contig12293:4860..49841622815427.0559173-CDS-L-elsbetiae_contig12293:4860..4984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4861..4984 +
1691682892.700645-CDS-L-elsbetiae_contig12293:4860..49841691682892.700645-CDS-L-elsbetiae_contig12293:4860..4984Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12293 4861..4984 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815427.0713708-UTR-L-elsbetiae_contig12293:4984..55001622815427.0713708-UTR-L-elsbetiae_contig12293:4984..5500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12293 4985..5500 +
1691682892.7183015-UTR-L-elsbetiae_contig12293:4984..55001691682892.7183015-UTR-L-elsbetiae_contig12293:4984..5500Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12293 4985..5500 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12293.1895.1prot_L-elsbetiae_contig12293.1895.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12293 1507..4984 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12293.1895.1

>prot_L-elsbetiae_contig12293.1895.1 ID=prot_L-elsbetiae_contig12293.1895.1|Name=mRNA_L-elsbetiae_contig12293.1895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=236bp
MTTAHRPTWAAAQAAASDVGNWSTGGQASQAVSSWDLPSQTVLKYRKSGQ
NSEAELRKRNVRAEVEEGERRALDEKPATIARRYDEGGAGRGQDRLQLLL
KEQGDVNLDDVKKYDDADDADSGDDLDSSDSDDDSDDDEEALEKELEKIR
KEREEARKKKEREEAEDEEKRKQEAAMTGNILLTQSNSSSQVKRRWNDDV
VFKGQARTEPETKKRFVNDTIRNDFHRRFLTKYIK*
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mRNA from alignment at L-elsbetiae_contig12293:1507..5500+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12293.1895.1 ID=mRNA_L-elsbetiae_contig12293.1895.1|Name=mRNA_L-elsbetiae_contig12293.1895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3994bp|location=Sequence derived from alignment at L-elsbetiae_contig12293:1507..5500+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAACCGCCCATCGGCCTACATGGGCTGCGGCCCAAGCTGCTGCTTC AGATGTCGGCAATTGGTCCACCGGAGGTATGAAGATTTTTTCCAGGAACC AACCTAAATTTTTGTTGTTTCTCTGAGCCCTTGAGGGAGCGTATGCACGT ATGGGTGCCGTGTGTGCTTACTCTCCCATCTATTATGGCGCCAGTCTTCA CCTATCGATAAATTTTGGACATTTGCATGATTCGGTTTAACAAGATTGAG GGGGTGGTTGAGAGTTGTATTGGCGTTTTGTTCACCCTGCTGCAGACATG TTAAATGTCGGTCTGAGGAGTTGCCGCAGTTCGAGATGGGGTACCGTAGG GGACACAAGATACCACACCCCCTGGACATATTTTCAAAGCTCTATTCCTC CCCAGCAAGAAGAGCGCCAGTGCCAAAAGGGGGTGCGTTGGAAAGATCTA GGCAAGAGCTGTCCGAAAATGCGTCGTTTGGTGCTGGCACCCTCTTCGTT ACGGAGCAATGGAGCTCTAAAATTCGGCCCAGGGGGTGTGGTATCTCATG TCACCTACGGTAGGCAGCTTCCCTTTGCTTTGTCGATTATGTGTTTCTCC TGATATCATCACTGCCGATGCTTAATTTTTAATTCGAAATTTAGAAATTC GGTGGTGTATGTATATACTGATATACGATATACTGTGTAAAAATAATTCA CAACGTTGACATACGGCGCAAATTATCAGGGTAGGCGGTAGGCTGCCCCT GGCACCTCATGAAATATATTGACACTACGTACCGTATATGTCTTAACCCT TTCAGTACTGGAAGCCCGTTTTGCGACGATTTAGCGACACCTAACTTTGG TCACTGTTTTATTTATGACTTTGGGGTGCACGGGCGTTCTTGGTATCCCG TGCAAAGGCCTGGGAGTACCCTGCCGAATTGTATAGACACTTTACCTACC GTATCTGGCCTCCTCACAGCTCCACAGCAGTGCTGTGAACACAACGGAGT TGTCGTCGATATCTCAAAATCACGAAAAAATCGACGTGTCTGCGATTCCA AACTCTGTACTTTCTGCGGCGCCCCCAGCGATTTGAGCCTTCGAGCTGAC AGCACGCACACACAGCTTCGCTGTAACTCTCGAGAACCACCGCATGCTGA GCCTAGAGCGGGTTGCTTCGCTCGCCACGCTGCATGATGCGTTGTGAGGG CTGCTGCGCGTGCACAGCCCAGGGTCTATCTCATGTCGCTGAGACAAAGA ACTCTGTATTGTCTGGTACGCCAAAAAAGTTCGACTTGAATTTAGTACTG GAAGTGTCGCCAAACGTTTAACAGAGTTTGACTGCTATTTAGTGTATAGG AAGTGTCGCCAAATTGGTGTGGGGCCCTGCAGCTGGTCTTTGGAGGTGTC TTGCGCAGGGACTGTCCTTCTCGACCAATCAGCGGGCATCTAAAACAGTT CGATGGTTTTGGTCCGATAACTTAGGTTCTGAGGGACCTTCGGTACTAAA AGGGTTAACGTCCCTCGCCCAATGGGCTGCTTGATTTTCAGGGCAAGCAA GCCAGGCAGTGTCTTCGTGGGATTTGCCGAGCCAAACTGTCTTGAAGTAC AGGAAGAGCGGCCAAAACAGCGAGGCGGAACTGCGGAAGCGGAATGTTCG TGCGGAGGTCGAAGAGGGCGAGCGTCGTGCATTGGATGAGAAGCCGGCAA CAATTGCTCGGCGCTATGGTGAGAAACCTGACTCTCTGGACGACCAACCC TGGCAATTCGTTTGTTTCGTATCGCTGTAGTTGTGGAATTTCGAAAACTA AAATTGCAAGCAGGACCTGTCGTAAGCTGTTTTATGTACAAGTCAACTCT GTATGATCTACTTACGTACTGCTGGTGACGAGAGTATTTCTTCGATTGTC CGATCATTTAGTACGGGTTGAAGGGTATTTAAAACCTTCCCCCCTCAGAG CTATATAGTTTGTCGTCCGAAGCACGTCGCGCCTGCGATAGCAATCGTGT GGGATCGGCAACATTGCCGCTAAAAAATGGTGAACGTTCGATGTGTTGGG AAAAAATTGAAGACGAAGGCGGAGCCGGTCGAGGGCAGGATCGCTTACAG CTGCTCCTGAAAGAGCAGGGTGACGTGAATCTGGACGACGTGAAGAAATA CGATGATGCAGACGACGCTGACAGTGGCGATGATTTGGATAGCAGCGACT CGGATGATGACTCGGATGATGATGAAGAGGCCCTGGAGAAGGAGCTCGAG AAGATCAGGAAGGAACGCGAAGAAGCCAGGAAAAAGAAGGTTCGCCATGT AGACCGAGGTTAAAATAGGAACACTATCAAATTCCTGAAGCCCCAATATC ACTTGAACGATCGGCAAGCGTTCCAGCCCCACTCGAAGTTGTTTTTCGAT TTTGTCGAATACCGGGTACCATTTCAAGTTATGGGCCCCAGATAGATTGT GGGCCGTCATGTACGGATAGCAAGCGCCGTATTCTGTTCCGTGGGACCAC AGCAGGGGCAAGGTGTTAAAGTTGGAAGCTCTGTGTTTTTCTCGCAAGTT TGCTCGTCGAGATCTTCATGGTGTGTCAGAACTGCCCCTTTGCGTTCACC GAGATTTCCTCCGACACGGAGCCGCACAGATCGCTTGCGCCCATAGGTAT ATACGCAGGATCAGTATTCGAAGTACTTCGTGTGTATATTTTTACCACTG TAGGAATCCAGTTCTGACCGTGCTATACCCTCAACGGTTAATTATTTGGC AGGAACGTGAAGAAGCCGAAGACGAAGAAAAGAGGAAGCAGGTGAGAAGT ATTCCTACCCAGCGTCCATTTCGGTGTGAGTAACTCATGCATCGAAAGCC CCAGGTCGCTCAATTGAAGACGTACCTCGTTAGAGCCACGGGTGCATATC GAGTGCATACCCGCTGGGTATTTCGTCACAACATGTTAACGCACGTGACA AAGCGGGCCCCCCTATATATGTTGTGTTCGGTACTCTTAACTTGTTTGGG GTCTTGTGCTCTGTGTTTCAGGAAGCGGCCATGACAGGGAATATTCTGCT AACTCAAAGTAACAGCAGCTCCCAAGTGAAACGAAGGTGAGCAGTTCACT TCCGATTGAAGTACATACTGCGTGCGCCGAGAGTAAACGACCTGACCTGT TGACCCTGTAAACATGTTTGCCAGCCTTCATGAGGTATTATAATGTAGCT TGTTTACTTATGCGTCCCTCTCCGGGGAAAAGCTTGGAAAGGAGTCTAGG TTTGCCACCACCCTTACATGGTCGTACTCGGCTTTGCTTGTGTTGGTCGC GACAAACGTGTTCGTGAGCGACGTTTCATTTCCTTGGTTGTTTTGCGCTG CCAGATGGAATGATGACGTTGTCTTTAAAGGACAAGCGAGGACGGAACCC GAGACGAAAAAGAGATTTGTGAACGACACCATCCGCAACGACTTCCATCG GAGGTTCTTGACCAAGTACATCAAGTAAAGAGCGGGAAAATGAGAGCGAT TGCGGGGAGGGGCGGCGCGCTCGGATGAATGTACATGGGGAGCAGGACGA TTGGAGGAGAAAAATAATTTATATGGTACACACGATATGCGACAAGATTG AGAAAACGTACATAGCCCGGGTGAGGGATAACAACACGCGATGAAGCTTG TGTGGAATACGCTACCTAGGTTAGCGATGAAAGCGCGATTCAGTTCGGGT AGTTCTGATGTTGCTTGGTTATCTCAGGAAGTGCGCTGTTTGTTTTTGAC GAGAGCGACGAAGAGCATTTCGCAAAGGATTTCATTTTTGCAGGCTGAAG TTCCCAAGCTCTGCGTTAATTGTGTCGCGTCTGTCGCCCTCAACAATTGG ACTTTGGGCCATCCAAGTAAATGCTATAGGGTCGTCCAAGTACCGCCGTA GAGCAGTGGTTGGCGTTTAGGCGGTTGCCTACCGGCACTATTGTCTGTAT GCTCTGATTTCCTCGCTTATGCTTGGTCGTCACTTTCCATTCCA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12293:1507..5500+

>mRNA_L-elsbetiae_contig12293.1895.1 ID=mRNA_L-elsbetiae_contig12293.1895.1|Name=mRNA_L-elsbetiae_contig12293.1895.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1416bp|location=Sequence derived from alignment at L-elsbetiae_contig12293:1507..5500+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACAACCGCCCATCGGCCTACATGGGCTGCGGCCCAAGCTGCTGCTTC
AGATGTCGGCAATTGGTCCACCGGAGATGACAACCGCCCATCGGCCTACA
TGGGCTGCGGCCCAAGCTGCTGCTTCAGATGTCGGCAATTGGTCCACCGG
AGGGCAAGCAAGCCAGGCAGTGTCTTCGTGGGATTTGCCGAGCCAAACTG
TCTTGAAGTACAGGAAGAGCGGCCAAAACAGCGAGGCGGAACTGCGGAAG
CGGAATGTTCGTGCGGAGGTCGAAGAGGGCGAGCGTCGTGCATTGGATGA
GAAGCCGGCAACAATTGCTCGGCGCTATGGGCAAGCAAGCCAGGCAGTGT
CTTCGTGGGATTTGCCGAGCCAAACTGTCTTGAAGTACAGGAAGAGCGGC
CAAAACAGCGAGGCGGAACTGCGGAAGCGGAATGTTCGTGCGGAGGTCGA
AGAGGGCGAGCGTCGTGCATTGGATGAGAAGCCGGCAACAATTGCTCGGC
GCTATGACGAAGGCGGAGCCGGTCGAGGGCAGGATCGCTTACAGCTGCTC
CTGAAAGAGCAGGGTGACGTGAATCTGGACGACGTGAAGAAATACGATGA
TGCAGACGACGCTGACAGTGGCGATGATTTGGATAGCAGCGACTCGGATG
ATGACTCGGATGATGATGAAGAGGCCCTGGAGAAGGAGCTCGAGAAGATC
AGGAAGGAACGCGAAGAAGCCAGGAAAAAGAAGACGAAGGCGGAGCCGGT
CGAGGGCAGGATCGCTTACAGCTGCTCCTGAAAGAGCAGGGTGACGTGAA
TCTGGACGACGTGAAGAAATACGATGATGCAGACGACGCTGACAGTGGCG
ATGATTTGGATAGCAGCGACTCGGATGATGACTCGGATGATGATGAAGAG
GCCCTGGAGAAGGAGCTCGAGAAGATCAGGAAGGAACGCGAAGAAGCCAG
GAAAAAGAAGGAACGTGAAGAAGCCGAAGACGAAGAAAAGAGGAAGCAGG
AACGTGAAGAAGCCGAAGACGAAGAAAAGAGGAAGCAGGAAGCGGCCATG
ACAGGGAATATTCTGCTAACTCAAAGTAACAGCAGCTCCCAAGTGAAACG
AAGGAAGCGGCCATGACAGGGAATATTCTGCTAACTCAAAGTAACAGCAG
CTCCCAAGTGAAACGAAGATGGAATGATGACGTTGTCTTTAAAGGACAAG
CGAGGACGGAACCCGAGACGAAAAAGAGATTTGTGAACGACACCATCCGC
AACGACTTCCATCGGAGGTTCTTGACCAAGTACATCAAGTAAATGGAATG
ATGACGTTGTCTTTAAAGGACAAGCGAGGACGGAACCCGAGACGAAAAAG
AGATTTGTGAACGACACCATCCGCAACGACTTCCATCGGAGGTTCTTGAC
CAAGTACATCAAGTAA
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