mRNA_L-elsbetiae_contig12292.1894.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12292.1894.1
Unique NamemRNA_L-elsbetiae_contig12292.1894.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12292.1894.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12292contigL-elsbetiae_contig12292:2462..3555 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size691
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12292.1894.1prot_L-elsbetiae_contig12292.1894.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12292 2587..3349 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.9050515-UTR-L-elsbetiae_contig12292:2461..25861622815426.9050515-UTR-L-elsbetiae_contig12292:2461..2586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12292 2462..2586 +
1691682892.599395-UTR-L-elsbetiae_contig12292:2461..25861691682892.599395-UTR-L-elsbetiae_contig12292:2461..2586Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12292 2462..2586 +
1622815426.9543736-UTR-L-elsbetiae_contig12292:3349..35551622815426.9543736-UTR-L-elsbetiae_contig12292:3349..3555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12292 3350..3555 +
1691682892.6326485-UTR-L-elsbetiae_contig12292:3349..35551691682892.6326485-UTR-L-elsbetiae_contig12292:3349..3555Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12292 3350..3555 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.9188795-CDS-L-elsbetiae_contig12292:2586..26911622815426.9188795-CDS-L-elsbetiae_contig12292:2586..2691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 2587..2691 +
1691682892.6083002-CDS-L-elsbetiae_contig12292:2586..26911691682892.6083002-CDS-L-elsbetiae_contig12292:2586..2691Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 2587..2691 +
1622815426.9351616-CDS-L-elsbetiae_contig12292:2881..30251622815426.9351616-CDS-L-elsbetiae_contig12292:2881..3025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 2882..3025 +
1691682892.6162517-CDS-L-elsbetiae_contig12292:2881..30251691682892.6162517-CDS-L-elsbetiae_contig12292:2881..3025Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 2882..3025 +
1622815426.9450505-CDS-L-elsbetiae_contig12292:3238..33491622815426.9450505-CDS-L-elsbetiae_contig12292:3238..3349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 3239..3349 +
1691682892.6243718-CDS-L-elsbetiae_contig12292:3238..33491691682892.6243718-CDS-L-elsbetiae_contig12292:3238..3349Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12292 3239..3349 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12292.1894.1

>prot_L-elsbetiae_contig12292.1894.1 ID=prot_L-elsbetiae_contig12292.1894.1|Name=mRNA_L-elsbetiae_contig12292.1894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=120bp
MIKTRSIWTRMELAAYGAPVGEGSMYCSERAVENKDGAGGESAPNATPPA
VGGTVLWRRRSTTTSRAALPVLALISSNSMAAQGRAAGHFSGAMFENELT
TGFVNAVSVLGIDVLRRHW*
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mRNA from alignment at L-elsbetiae_contig12292:2462..3555+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12292.1894.1 ID=mRNA_L-elsbetiae_contig12292.1894.1|Name=mRNA_L-elsbetiae_contig12292.1894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1094bp|location=Sequence derived from alignment at L-elsbetiae_contig12292:2462..3555+ (Laminarionema elsbetiae ELsaHSoW15)
ACTGCCGCGGCATCAGCTGAAGCGGACAGATGACCTTCAACATGGTGGAG
TCACAGGGCACATCCGGACGCCAACGGGAATGACGCACGCCGTGGGCACC
GGATAAGCGAAAAGCAAACGAGGCCATGATCAAAACAAGGAGCATTTGGA
CCCGAATGGAACTCGCAGCCTACGGGGCTCCAGTCGGCGAAGGCTCCATG
TACTGCTCGGAGCGTGCCGTCGAAAACAAGGTTTTAGGGCAGCAGCGACA
GAGGGGTGTACGTCGGCGTAGGAAGCGAAGTATGCACGATATAAATGTTT
AATGTTCGATTGGCGTAGACACGCTTCCATGTGCTCTTCTCGGGGTTGAG
TGTTTAGTTGCTTGGCATATGTACACATCGTGCTCACCTTTCCCTTCTCT
GTCTCTTTTGGCGCGCGCAGGACGGTGCGGGTGGAGAGAGTGCCCCAAAT
GCGACACCACCGGCGGTGGGTGGAACAGTCCTCTGGCGCCGGAGGTCTAC
AACAACCTCGAGGGCAGCCCTGCCGGTTCTTGCGCTGATATCATCGAACT
CCATGGCGGCTCAGGTGAGACATCCAGAAGCTTCTCGTTGAAAAAGGCGA
GGGCTCTTGCTGCAGGTGGTGCTCACGACAGAAACGTGCCATCAACCGTG
CTGGGCTTTTTTTCATGTTCCTATAGGTGTTCCTTTATTCGGGATATGTT
GCCGCTCTTCTTACGTCTGGTTTCATGCTCTCGCGGCTCCCTCTTTCTTG
TCTTTCCTCCCGCGCTACGTTCTTCAGGGACGCGCTGCAGGCCACTTTAG
CGGAGCCATGTTCGAAAACGAACTCACGACGGGCTTCGTCAACGCAGTGA
GCGTTCTTGGAATTGATGTTCTACGAAGGCACTGGTAAATAAATAGCATG
ATTTCGTCTCGTTGCCGCATGATGTGGATTTGCAGGCGAAAGCAGTAGAG
TTTGGCGCATCAGTCCTTGTCATATTGGAGGATACGCTGCTGTTGTGCGG
CGTTTGCCCCGTTTAGGCTTTCTCGAACTCTATCTGCTGACTTTGGGGTG
TTTGTTCCCATGACCATATTTCAGTACTGTTGTCATCATTGCAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12292:2462..3555+

>mRNA_L-elsbetiae_contig12292.1894.1 ID=mRNA_L-elsbetiae_contig12292.1894.1|Name=mRNA_L-elsbetiae_contig12292.1894.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=720bp|location=Sequence derived from alignment at L-elsbetiae_contig12292:2462..3555+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATCAAAACAAGGAGCATTTGGACCCGAATGGAACTCGCAGCCTACGG
GGCTCCAGTCGGCGAAGGCTCCATGTACTGCTCGGAGCGTGCCGTCGAAA
ACAAGATGATCAAAACAAGGAGCATTTGGACCCGAATGGAACTCGCAGCC
TACGGGGCTCCAGTCGGCGAAGGCTCCATGTACTGCTCGGAGCGTGCCGT
CGAAAACAAGGACGGTGCGGGTGGAGAGAGTGCCCCAAATGCGACACCAC
CGGCGGTGGGTGGAACAGTCCTCTGGCGCCGGAGGTCTACAACAACCTCG
AGGGCAGCCCTGCCGGTTCTTGCGCTGATATCATCGAACTCCATGGCGGC
TCAGGACGGTGCGGGTGGAGAGAGTGCCCCAAATGCGACACCACCGGCGG
TGGGTGGAACAGTCCTCTGGCGCCGGAGGTCTACAACAACCTCGAGGGCA
GCCCTGCCGGTTCTTGCGCTGATATCATCGAACTCCATGGCGGCTCAGGG
ACGCGCTGCAGGCCACTTTAGCGGAGCCATGTTCGAAAACGAACTCACGA
CGGGCTTCGTCAACGCAGTGAGCGTTCTTGGAATTGATGTTCTACGAAGG
CACTGGTAAGGACGCGCTGCAGGCCACTTTAGCGGAGCCATGTTCGAAAA
CGAACTCACGACGGGCTTCGTCAACGCAGTGAGCGTTCTTGGAATTGATG
TTCTACGAAGGCACTGGTAA
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