mRNA_L-elsbetiae_contig12291.1893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI) HSP 1 Score: 209 bits (531), Expect = 5.670e-59 Identity = 124/165 (75.15%), Postives = 126/165 (76.36%), Query Frame = 3 Query: 3 SVLLLVCIAQACLAFVPSWTATFRSSRLQPPPSTPAAATCSLSQPSGATCPVFGACGTCGAQIFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 497 SVLLLV IAQACLAFVPSWTATFRSSR QPP STPAAAT SLSQPSG CPVFGAC TCGAQ FY + GMTSL+AMSEG EEEGGGDH AREAAD PAADEIRAVQ D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR Sbjct: 7 SVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI) HSP 1 Score: 182 bits (462), Expect = 5.240e-49 Identity = 114/138 (82.61%), Postives = 117/138 (84.78%), Query Frame = 3 Query: 210 MTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXX--KEDRLSRIEQLRANNAPA 617 MTSL+AMSEGDEEEGGGDHDAREAADRIPAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ XXXXXXX KEDR SRIEQLRANNAPA Sbjct: 1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI) HSP 1 Score: 176 bits (446), Expect = 1.440e-47 Identity = 123/154 (79.87%), Postives = 128/154 (83.12%), Query Frame = 3 Query: 189 IFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXK-----------EDRLSRIEQLRANNAPA 617 +FY +RGMT L+AMSEGDEEEGGGDH AREAADR+PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL EQLRR XXXXXXXXXXXXXXXX EDRLSR EQ RANNAPA Sbjct: 1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI) HSP 1 Score: 169 bits (429), Expect = 2.400e-45 Identity = 115/150 (76.67%), Postives = 121/150 (80.67%), Query Frame = 3 Query: 210 MTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAGIEASFI 638 MTS +AMSEGDEEEGGGDHDAREAAD PAADEIRAVQ AEEETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXX KEDRLSRIEQLRANNAPAG+ ++ + Sbjct: 1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGVVSADL 150
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI) HSP 1 Score: 108 bits (270), Expect = 8.590e-24 Identity = 92/160 (57.50%), Postives = 103/160 (64.38%), Query Frame = 3 Query: 189 IFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAGIEAS-FICGDPQQCT 662 + Y +RG+TSL+A+SEG+EE+GGGDHD REAA PAADEIRAVQ KIDD+EAA IAGGS YLGMTDPEALLK+ KE R XXXXXXXXXXXX KE RL IEQ RANNAPAG EAS ++ QQ T Sbjct: 1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKE---KE----RLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGTEASHYVRRSIQQFT 153 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12291.1893.1 >prot_L-elsbetiae_contig12291.1893.1 ID=prot_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp MRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKback to top mRNA from alignment at L-elsbetiae_contig12291:541..3102+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12291.1893.1 ID=mRNA_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig12291:541..3102+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12291:541..3102+ >mRNA_L-elsbetiae_contig12291.1893.1 ID=mRNA_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig12291:541..3102+ (Laminarionema elsbetiae ELsaHSoW15)back to top |