mRNA_L-elsbetiae_contig12291.1893.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12291.1893.1
Unique NamemRNA_L-elsbetiae_contig12291.1893.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7FM56_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM56_ECTSI)

HSP 1 Score: 209 bits (531), Expect = 5.670e-59
Identity = 124/165 (75.15%), Postives = 126/165 (76.36%), Query Frame = 3
Query:    3 SVLLLVCIAQACLAFVPSWTATFRSSRLQPPPSTPAAATCSLSQPSGATCPVFGACGTCGAQIFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 497
            SVLLLV IAQACLAFVPSWTATFRSSR QPP STPAAAT SLSQPSG  CPVFGAC TCGAQ FY + GMTSL+AMSEG EEEGGGDH AREAAD  PAADEIRAVQ                        D IEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR
Sbjct:    7 SVLLLVGIAQACLAFVPSWTATFRSSRSQPPASTPAAATFSLSQPSGPICPVFGACDTCGAQFFYPVPGMTSLSAMSEGGEEEGGGDHHAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXXTDGIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLR 171          
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G8Q1_ECTSI (Uncharacterized protein n=3 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q1_ECTSI)

HSP 1 Score: 182 bits (462), Expect = 5.240e-49
Identity = 114/138 (82.61%), Postives = 117/138 (84.78%), Query Frame = 3
Query:  210 MTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXX--KEDRLSRIEQLRANNAPA 617
            MTSL+AMSEGDEEEGGGDHDAREAADRIPAADEIRAVQD+IRGVERK EDAE+ETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQ        XXXXXXX           KEDR SRIEQLRANNAPA
Sbjct:    1 MTSLSAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDDIRGVERKXEDAEKETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQXXXXXXXXXXXXXXXRELLLNELLLKKEDRFSRIEQLRANNAPA 138          
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D8LPP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPP1_ECTSI)

HSP 1 Score: 176 bits (446), Expect = 1.440e-47
Identity = 123/154 (79.87%), Postives = 128/154 (83.12%), Query Frame = 3
Query:  189 IFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXK-----------EDRLSRIEQLRANNAPA 617
            +FY +RGMT L+AMSEGDEEEGGGDH AREAADR+PAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGG+RYLGMTDPEALLKQL    EQLRR     XXXXXXXXXXXXXXXX            EDRLSR EQ RANNAPA
Sbjct:    1 MFYPVRGMTGLSAMSEGDEEEGGGDHHAREAADRLPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAAIAGGARYLGMTDPEALLKQL----EQLRRXXXXXXXXXXXXXXXXXXXXXXXXXXXELLLKTEDRLSRSEQFRANNAPA 150          
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G515_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G515_ECTSI)

HSP 1 Score: 169 bits (429), Expect = 2.400e-45
Identity = 115/150 (76.67%), Postives = 121/150 (80.67%), Query Frame = 3
Query:  210 MTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIED-------AEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAGIEASFI 638
            MTS +AMSEGDEEEGGGDHDAREAAD  PAADEIRAVQ                   AEEETAEVVKKID IEAAIAGGS+YLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXX    KEDRLSRIEQLRANNAPAG+ ++ +
Sbjct:    1 MTSSSAMSEGDEEEGGGDHDAREAADGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXAEEETAEVVKKIDYIEAAIAGGSKYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXILLKKEDRLSRIEQLRANNAPAGVVSADL 150          
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Match: D7G3Q8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3Q8_ECTSI)

HSP 1 Score: 108 bits (270), Expect = 8.590e-24
Identity = 92/160 (57.50%), Postives = 103/160 (64.38%), Query Frame = 3
Query:  189 IFYLMRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERKIEDAEEETAEVVKKIDDIEAA-IAGGSRYLGMTDPEALLKQLGRKEEQLRRKEGKEXXXXXXXXXXXXXXXXKEDRLSRIEQLRANNAPAGIEAS-FICGDPQQCT 662
            + Y +RG+TSL+A+SEG+EE+GGGDHD REAA   PAADEIRAVQ                      KIDD+EAA IAGGS YLGMTDPEALLK+   KE    R     XXXXXXXXXXXX    KE RL  IEQ RANNAPAG EAS ++    QQ T
Sbjct:    1 MVYPVRGITSLSALSEGNEEDGGGDHDTREAAGGSPAADEIRAVQXXXXXXXXXXXXXXXXXXXXXXKIDDVEAATIAGGSGYLGMTDPEALLKE---KE----RLGXXXXXXXXXXXXXXXQVLVKEKRLFSIEQRRANNAPAGTEASHYVRRSIQQFT 153          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12291.1893.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FM56_ECTSI5.670e-5975.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G8Q1_ECTSI5.240e-4982.61Uncharacterized protein n=3 Tax=Ectocarpus silicul... [more]
D8LPP1_ECTSI1.440e-4779.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G515_ECTSI2.400e-4576.67Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G3Q8_ECTSI8.590e-2457.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12291contigL-elsbetiae_contig12291:541..3102 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_002570.1
Exons2
Model size2519
Cds size633
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12291.1893.1prot_L-elsbetiae_contig12291.1893.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12291 741..1373 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.8435655-UTR-L-elsbetiae_contig12291:540..7401622815426.8435655-UTR-L-elsbetiae_contig12291:540..740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 541..740 +
1691682892.5450232-UTR-L-elsbetiae_contig12291:540..7401691682892.5450232-UTR-L-elsbetiae_contig12291:540..740Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 541..740 +
1622815426.8642657-UTR-L-elsbetiae_contig12291:1373..29571622815426.8642657-UTR-L-elsbetiae_contig12291:1373..2957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 1374..2957 +
1691682892.5764728-UTR-L-elsbetiae_contig12291:1373..29571691682892.5764728-UTR-L-elsbetiae_contig12291:1373..2957Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 1374..2957 +
1622815426.8739328-UTR-L-elsbetiae_contig12291:3000..31021622815426.8739328-UTR-L-elsbetiae_contig12291:3000..3102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 3001..3102 +
1691682892.5877132-UTR-L-elsbetiae_contig12291:3000..31021691682892.5877132-UTR-L-elsbetiae_contig12291:3000..3102Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12291 3001..3102 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.854623-CDS-L-elsbetiae_contig12291:740..13731622815426.854623-CDS-L-elsbetiae_contig12291:740..1373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12291 741..1373 +
1691682892.5590465-CDS-L-elsbetiae_contig12291:740..13731691682892.5590465-CDS-L-elsbetiae_contig12291:740..1373Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12291 741..1373 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12291.1893.1

>prot_L-elsbetiae_contig12291.1893.1 ID=prot_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=211bp
MRGMTSLNAMSEGDEEEGGGDHDAREAADRIPAADEIRAVQDEIRGVERK
IEDAEEETAEVVKKIDDIEAAIAGGSRYLGMTDPEALLKQLGRKEEQLRR
KEGKEEQLRRKEEQLRELLLKKEDRLSRIEQLRANNAPAGIEASFICGDP
QQCTGDAGRPLESRPFQFFLKLVVSCSFSSSTLFSCDRNPDTGILAQKLT
RYNPYRFPFF*
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mRNA from alignment at L-elsbetiae_contig12291:541..3102+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12291.1893.1 ID=mRNA_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2562bp|location=Sequence derived from alignment at L-elsbetiae_contig12291:541..3102+ (Laminarionema elsbetiae ELsaHSoW15)
TGTCGGTTCTTCTCCTGGTTTGTATCGCACAAGCATGCTTGGCCTTCGTC CCGAGCTGGACTGCGACGTTCAGGTCGTCACGCTTGCAGCCCCCTCCTTC CACGCCTGCGGCGGCGACGTGTTCGCTCTCGCAGCCCTCTGGTGCGACCT GCCCTGTGTTCGGGGCTTGTGGCACTTGTGGGGCGCAAATTTTTTACCTG ATGCGAGGGATGACGAGCTTGAACGCGATGAGCGAGGGCGACGAGGAGGA GGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATCGCATTCCGGCGG CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGCAAG ATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGA TATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCGGAATGACCGACC CCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAGCTACGCAGG AAGGAGGGGAAGGAGGAGCAGCTACGCAGGAAGGAGGAGCAACTCCGCGA GCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTG CCAACAACGCCCCCGCAGGTATAGAAGCGTCCTTTATATGTGGAGATCCA CAACAGTGTACAGGGGATGCAGGTCGCCCGCTTGAAAGCAGACCATTCCA ATTTTTTTTGAAATTGGTAGTCTCTTGCAGCTTCTCCAGTTCGACATTGT TTTCTTGTGACAGGAATCCTGACACAGGAATCCTGGCACAGAAACTCACA CGTTATAATCCCTATCGATTTCCGTTTTTTTAGGATAACTTTTTCAATCG GGAACCAAGCGCTTATTCCTTGCACAGGCACCTCAACACACCACAGTAGC TTCTCCCTACCAAGTCTCGTCCTCGCTCTCGAAGGTTTGGCCAGATGCGG CCGGCGACCTGCAGCTACCCGTCGCATGTTATAATCCCTATTGATTTCCG TTTTTTTGGGATAACTTTTTCAATCGGGAACCAAGCGCTTATTCCTTGCA CAAGCACCCCAACACACCACAGTAGCTGCTCCCTACCAAGTCTCGTCCTC GCTCTCGAAGGTTTGGCCAGACTGTCTTGTGACAGAAAATTGACCCCTCC CACACGTTATATCCCGATTGGGCTCCTTCAGTTCGAGGAAGAAAAGACGC CGCACACGTGTGTCATTTGCGACAGCTGAAACGAAGTGACCAGGGGAGCT CCTCGCGGCTAGTCATATCTACATATCTCAGAGCGCGCTCGCATGAAATT TTCAGGCCGCCTGCTGCCTTCGTCGATGTGTACAGCCGATGGGGCGGTGC TCGAGCATTTCGTGCGCTTGTTTTTCAACTGCTTGCTGCTGCTGTGGCAT TTATTTTCAGTGTAGACTTGCCCCGTTGTTTCCCCCCGCTTCTTTAGTTC GAGGAAGAAAAGACGCCGCACACGTGTGTCATTTGCGACAGCTGAAACGA AGTAACCAGGGGATCTCCTGCCTTGCAGCTCGCGGCTAGTCATACCTACA TATCTCAGAGCGCGCTCGCGTCAAGTTTTCAGGCCGCCTGCTGCCTTCGT CGATGTGTACAGCCGATGGAGCGGTGCTCGAGCATTTCGTGCGCTTGTTT TTCAACTGCTTGCTGCTGCTGTGGCATTATGCACATGTTCTATGATTCTT CCTGCCGAAATATCTCAAACATAAGTGTCCGCGGGTGGGTCGGTATTTAT TTCCAACCGACCTCTGAGGGTGGGTCCTACGTAATTTTTGGGCAAGTCGA ACACAGAGCAGCCACACAACATATCCACATGTTCTATGATTCTTCCTGCC GAATATCTCACCCATACAATATAAGTGTCCGCGGGTGGGTCGCTATCTGG GATCGATCGGTATGCTCATCTGTCTGTGTCTGCCTGCCTTTCGCGCAGTC TGCTTCTATTTTTCTTCTGTTCGGTACGCCCGCTGTTGCGCTATTGATTT CCGTTAACTTTTTCAATCGGGAACCAAGCGCTTATTCCTTGCACAGGCAC CCCATCACCCAACAGTAGGTGCTCCCTGCCAAGTGTCGTCCTTAAACTAG AAGTTTTGACACAACGCTTCCGATTCCTGGATGACGGACCTGAAAAAATG ACTCCAACAACCTGCTGTGGCAGGAGAGCAACAACAAACACGTTTTTCCG CAGGCAGGCACCTTCCGACAAGCGAACGGCTGAGCTACCCACACACGCCA TGGTACACATACAGCAAACGTTTCCTAGCGAACACGTTTCCTAGCGAACA TATCACTGCCGGCATCGGGCCAAGTGCCTAGAGTCGTAGTGTTTCTCTGC GCAGAAAAAACGCGAGCTCCTGCTTTGTGGCTCGAAGCTAGTCACATCTA CATATCTCTTCTTGTCAGCCCACAAGAAATATTCCCGGGCGGGCGGTCAC TTCTTGTCAGCCCACAAGAAATATTCCCGGGCGGGGTAGCATTCGTGTCT TTAATTTCTTGTGCGCAAAACGAATCTTAGCCGGAACTATGGGATTCTTT GTTTTCCTGAGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12291:541..3102+

>mRNA_L-elsbetiae_contig12291.1893.1 ID=mRNA_L-elsbetiae_contig12291.1893.1|Name=mRNA_L-elsbetiae_contig12291.1893.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1266bp|location=Sequence derived from alignment at L-elsbetiae_contig12291:541..3102+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGAGGGATGACGAGCTTGAACGCGATGAGCGAGGGCGACGAGGAGGA
GGGGGGCGGCGATCATGATGCGCGAGAAGCTGCCGATCGCATTCCGGCGG
CGGACGAGATCCGTGCGGTCCAGGATGAGATCCGTGGTGTAGAGCGCAAG
ATCGAGGATGCAGAGGAGGAGACGGCAGAGGTTGTCAAGAAGATTGATGA
TATTGAGGCTGCTATTGCTGGGGGCTCCAGGTACCTCGGAATGACCGACC
CCGAAGCCCTCTTGAAGCAACTAGGCAGGAAGGAGGAGCAGCTACGCAGG
AAGGAGGGGAAGGAGGAGCAGCTACGCAGGAAGGAGGAGCAACTCCGCGA
GCTCCTTTTGAAGAAGGAGGACCGGCTCTCCAGGATTGAGCAGCTCCGTG
CCAACAACGCCCCCGCAGGTATAGAAGCGTCCTTTATATGTGGAGATCCA
CAACAGTGTACAGGGGATGCAGGTCGCCCGCTTGAAAGCAGACCATTCCA
ATTTTTTTTGAAATTGGTAGTCTCTTGCAGCTTCTCCAGTTCGACATTGT
TTTCTTGTGACAGGAATCCTGACACAGGAATCCTGGCACAGAAACTCACA
CGTTATAATCCCTATCGATTTCCGTTTTTTTAGATGCGAGGGATGACGAG
CTTGAACGCGATGAGCGAGGGCGACGAGGAGGAGGGGGGCGGCGATCATG
ATGCGCGAGAAGCTGCCGATCGCATTCCGGCGGCGGACGAGATCCGTGCG
GTCCAGGATGAGATCCGTGGTGTAGAGCGCAAGATCGAGGATGCAGAGGA
GGAGACGGCAGAGGTTGTCAAGAAGATTGATGATATTGAGGCTGCTATTG
CTGGGGGCTCCAGGTACCTCGGAATGACCGACCCCGAAGCCCTCTTGAAG
CAACTAGGCAGGAAGGAGGAGCAGCTACGCAGGAAGGAGGGGAAGGAGGA
GCAGCTACGCAGGAAGGAGGAGCAACTCCGCGAGCTCCTTTTGAAGAAGG
AGGACCGGCTCTCCAGGATTGAGCAGCTCCGTGCCAACAACGCCCCCGCA
GGTATAGAAGCGTCCTTTATATGTGGAGATCCACAACAGTGTACAGGGGA
TGCAGGTCGCCCGCTTGAAAGCAGACCATTCCAATTTTTTTTGAAATTGG
TAGTCTCTTGCAGCTTCTCCAGTTCGACATTGTTTTCTTGTGACAGGAAT
CCTGACACAGGAATCCTGGCACAGAAACTCACACGTTATAATCCCTATCG
ATTTCCGTTTTTTTAG
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