mRNA_L-elsbetiae_contig12288.1890.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12288.1890.1
Unique NamemRNA_L-elsbetiae_contig12288.1890.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12288.1890.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12288contigL-elsbetiae_contig12288:666..1374 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size709
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12288.1890.1prot_L-elsbetiae_contig12288.1890.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12288 706..1179 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.4443333-UTR-L-elsbetiae_contig12288:665..7051622815426.4443333-UTR-L-elsbetiae_contig12288:665..705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12288 666..705 +
1691682892.2976224-UTR-L-elsbetiae_contig12288:665..7051691682892.2976224-UTR-L-elsbetiae_contig12288:665..705Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12288 666..705 +
1622815426.504132-UTR-L-elsbetiae_contig12288:1179..13741622815426.504132-UTR-L-elsbetiae_contig12288:1179..1374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12288 1180..1374 +
1691682892.3165877-UTR-L-elsbetiae_contig12288:1179..13741691682892.3165877-UTR-L-elsbetiae_contig12288:1179..1374Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12288 1180..1374 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.4549322-CDS-L-elsbetiae_contig12288:705..11791622815426.4549322-CDS-L-elsbetiae_contig12288:705..1179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12288 706..1179 +
1691682892.3074346-CDS-L-elsbetiae_contig12288:705..11791691682892.3074346-CDS-L-elsbetiae_contig12288:705..1179Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12288 706..1179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12288.1890.1

>prot_L-elsbetiae_contig12288.1890.1 ID=prot_L-elsbetiae_contig12288.1890.1|Name=mRNA_L-elsbetiae_contig12288.1890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MLDFRPSYNKVSLLSLISGFLSAGVIRRSYAVCTGPHRFQVYLKLVPAAL
GHVRSFSSLPAAQQPRDPTCICTPPARCIPFVTGGAHTLVGAAETQRRTH
LPKHTPNVTSSPGALSVPLWLRHLRRYPDSLFSSTGMLSLCYMECPTTTA
VPSPVSF*
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mRNA from alignment at L-elsbetiae_contig12288:666..1374+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12288.1890.1 ID=mRNA_L-elsbetiae_contig12288.1890.1|Name=mRNA_L-elsbetiae_contig12288.1890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=709bp|location=Sequence derived from alignment at L-elsbetiae_contig12288:666..1374+ (Laminarionema elsbetiae ELsaHSoW15)
GGCCCCTCATTAAACCCTACACATTACAAAAGAAAGTGTTATGCTCGACT
TTCGACCCAGCTATAATAAAGTCAGCCTGCTGAGCCTGATTTCAGGTTTC
TTATCAGCCGGGGTGATACGCCGGTCATATGCTGTCTGTACCGGTCCTCA
TCGATTTCAGGTCTACCTCAAACTCGTCCCGGCTGCTCTTGGTCACGTGC
GTTCGTTTTCCTCGCTGCCTGCGGCACAGCAGCCTCGCGACCCGACATGC
ATATGTACCCCTCCTGCACGATGTATACCATTCGTCACGGGGGGGGCTCA
CACATTGGTCGGTGCAGCGGAAACTCAGCGCCGTACACATCTACCTAAAC
ACACCCCAAACGTGACCTCTAGCCCCGGAGCTTTGTCCGTGCCCCTCTGG
CTTAGACATCTACGAAGATATCCTGACTCGCTCTTCTCTTCTACGGGGAT
GCTCTCATTGTGTTACATGGAGTGCCCAACTACTACTGCTGTACCCTCCC
CGGTGTCATTCTGACAACTACTGGCAGCTCCAAACTACGGCCCGCATTTT
GTGCTAAGCTCGGAACGCCTACGCCGGAAATTAAGTTTATGTAGGAAAAT
GACCCTAACCCTAACCCCAACCACCGACCCCCCTTTTCCGGTTTCCATAT
TTTATCTCATATGTTATCTCATACGTTAATGAGATAAAGTATGGAAACCC
TGCGTAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12288:666..1374+

>mRNA_L-elsbetiae_contig12288.1890.1 ID=mRNA_L-elsbetiae_contig12288.1890.1|Name=mRNA_L-elsbetiae_contig12288.1890.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig12288:666..1374+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCGACTTTCGACCCAGCTATAATAAAGTCAGCCTGCTGAGCCTGAT
TTCAGGTTTCTTATCAGCCGGGGTGATACGCCGGTCATATGCTGTCTGTA
CCGGTCCTCATCGATTTCAGGTCTACCTCAAACTCGTCCCGGCTGCTCTT
GGTCACGTGCGTTCGTTTTCCTCGCTGCCTGCGGCACAGCAGCCTCGCGA
CCCGACATGCATATGTACCCCTCCTGCACGATGTATACCATTCGTCACGG
GGGGGGCTCACACATTGGTCGGTGCAGCGGAAACTCAGCGCCGTACACAT
CTACCTAAACACACCCCAAACGTGACCTCTAGCCCCGGAGCTTTGTCCGT
GCCCCTCTGGCTTAGACATCTACGAAGATATCCTGACTCGCTCTTCTCTT
CTACGGGGATGCTCTCATTGTGTTACATGGAGTGCCCAACTACTACTGCT
GTACCCTCCCCGGTGTCATTCTGAATGCTCGACTTTCGACCCAGCTATAA
TAAAGTCAGCCTGCTGAGCCTGATTTCAGGTTTCTTATCAGCCGGGGTGA
TACGCCGGTCATATGCTGTCTGTACCGGTCCTCATCGATTTCAGGTCTAC
CTCAAACTCGTCCCGGCTGCTCTTGGTCACGTGCGTTCGTTTTCCTCGCT
GCCTGCGGCACAGCAGCCTCGCGACCCGACATGCATATGTACCCCTCCTG
CACGATGTATACCATTCGTCACGGGGGGGGCTCACACATTGGTCGGTGCA
GCGGAAACTCAGCGCCGTACACATCTACCTAAACACACCCCAAACGTGAC
CTCTAGCCCCGGAGCTTTGTCCGTGCCCCTCTGGCTTAGACATCTACGAA
GATATCCTGACTCGCTCTTCTCTTCTACGGGGATGCTCTCATTGTGTTAC
ATGGAGTGCCCAACTACTACTGCTGTACCCTCCCCGGTGTCATTCTGA
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