mRNA_L-elsbetiae_contig12282.1888.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12282.1888.1
Unique NamemRNA_L-elsbetiae_contig12282.1888.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12282.1888.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12282contigL-elsbetiae_contig12282:2128..4985 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size452
Cds size315
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12282.1888.1prot_L-elsbetiae_contig12282.1888.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12282 4260..4985 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.3032367-UTR-L-elsbetiae_contig12282:2127..22621622815426.3032367-UTR-L-elsbetiae_contig12282:2127..2262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12282 2128..2262 -
1691682892.2365217-UTR-L-elsbetiae_contig12282:2127..22621691682892.2365217-UTR-L-elsbetiae_contig12282:2127..2262Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12282 2128..2262 -
1622815426.3183565-UTR-L-elsbetiae_contig12282:4258..42591622815426.3183565-UTR-L-elsbetiae_contig12282:4258..4259Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12282 4259..4259 -
1691682892.2445824-UTR-L-elsbetiae_contig12282:4258..42591691682892.2445824-UTR-L-elsbetiae_contig12282:4258..4259Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12282 4259..4259 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.332887-CDS-L-elsbetiae_contig12282:4259..43621622815426.332887-CDS-L-elsbetiae_contig12282:4259..4362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12282 4260..4362 -
1691682892.2527235-CDS-L-elsbetiae_contig12282:4259..43621691682892.2527235-CDS-L-elsbetiae_contig12282:4259..4362Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12282 4260..4362 -
1622815426.3496752-CDS-L-elsbetiae_contig12282:4773..49851622815426.3496752-CDS-L-elsbetiae_contig12282:4773..4985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12282 4774..4985 -
1691682892.2658362-CDS-L-elsbetiae_contig12282:4773..49851691682892.2658362-CDS-L-elsbetiae_contig12282:4773..4985Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12282 4774..4985 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12282.1888.1

>prot_L-elsbetiae_contig12282.1888.1 ID=prot_L-elsbetiae_contig12282.1888.1|Name=mRNA_L-elsbetiae_contig12282.1888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=105bp
GAVTDECRQQCNSRGRPSRCREASSEVVDVFVAGLGAVQHSREWERVGEE
AAWKGGCSRTLIGNDTITQFRMVIWAGKTKCGWIHGVVLEDVRSLEGRLE
GRTK*
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mRNA from alignment at L-elsbetiae_contig12282:2128..4985-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12282.1888.1 ID=mRNA_L-elsbetiae_contig12282.1888.1|Name=mRNA_L-elsbetiae_contig12282.1888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2858bp|location=Sequence derived from alignment at L-elsbetiae_contig12282:2128..4985- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCCGTGACCGATGAATGCCGACAGCAGTGCAACAGCCGTGGTCGGCC
AAGTCGATGTCGCGAGGCTTCCAGCGAGGTGGTAGACGTTTTCGTTGCCG
GCCTTGGGGCAGTACAGCATAGCCGAGAGTGGGAGAGAGTGGGCGAGGAA
GCGGCTTGGAAGGGAGGCTGCAGCCGCACATTGATAGGAAACGACACCAT
CACGCAGTTCAGGTAAGCGAATATCTAGCCAACCGCAGTTTCTGTCCGTG
AAAAAGCTCCGACCCCGGCTCTTACGGTTTGTGCGTTAGCAGCGACTATG
AAAACTTAACACTGGGATGCCGCCCGCCCCCTAGACGCTACTTCTGTTGG
ATGAGTGCGGAGAGGCTGCAGTCGGGTGTTGTCCGTGTGGGATCCAGCCC
TGCTTTTTTAACGAAGAAAAACTCTGGAACCGTTTTCCTTGCCTGCCCCA
CTCTCCCCCTTAAACCTCGGGCATGGCGATTCTTCTTTTTTGTCCCAACA
GATTTGCCAACAAGTGAGCTGTCCTGCCTTCAAGACCATTTTTTTCACAA
AACATGGTCATGTTTGGCGTTTTCATCAGCTGCAGGCACTTTCTCCCTTC
GGTATGGAATATATTGATGACAGGATGGTGATTTGGGCAGGCAAGACCAA
ATGCGGCTGGATTCACGGCGTTGTTCTGGAGGATGTTCGGAGCCTGGAGG
GCAGACTCGAGGGACGTACAAAATAAGGTATGGCATATGCCAGAGGAGCT
TGAACGGACGCCTTGCTGTTTTTCTGTCGACTTTGATAGTCGATGGCATT
TTTTCTTTTTTGTGGCATATCTTGTTGAGATGGTAGCGTTGGGTGGGAGT
GGGTGCGAAGTCACGGCGGACTCGGTATTTTTTGTTGCTGGTGTTCGCTC
AAGAGGTCACACAAAGTCGGCAGAGCAGTGTACTTCAGACTGGCGCTGGC
GCCTCCATCCACCCTTAACCTACACGACAGTCCATTCGCCGCCTGTGTTG
AATTGGAAGCATACATATGGTGATAAGTGATACTTTCGCACGGCTTACTT
GTAGTTGTTGTTGTTGCTGCTGTTGCCACTTCTGCTGTGAAGGCACAAAC
GTTTTGGTTGCCATTTCGCTCGATAACAGCAAGATGAGAGTAGGGAGCGG
GGCAAGAAAAGTATTGTGGTGCTATCCTATACCCGCACAACTTGCAAATG
CCATACCTCTAGCTCTGGAATCAAGTGTAGATCCTAACGAATCATTCTGT
AGAATCTGCGTCAAAATGTCAACGTTCATACATTTACCGCCCGTTCTCTA
CTCGCGCACAAAGCCAACATCAGCATCCACCGACCGGCACACAAACAACA
AAACAAAGGAGTCAGAGGGCGTTTTTTGTCTTCGTTGTCTGTCGCGTTCA
TTGGGGAAAGCGTCAAAGTCAGCTGAGACGGCCTCAAATGAGCACTAACG
AACAAGAGCGAATGGCATGTTTGCGCAAACCAAAAGTTGAAGCCAGGTAT
GCCAGTGCCAGAGTAAAGAAAAAATGAAGTCTTTCCGTCGTGCGAAAAGC
AAAAAAAACACAATTTGGGAGATTTGGAAGTTATTCCGAAACAAAGCACC
GTTGCCAGCCGGTCCCACAGCCCGCAACCCATGCGTTGGTAAAGTAGATC
TGGAGTTGCGATGCTCGGCAGGCCAGGAATCGACATGTCTATGTAGTGCA
TAGGCAGCATCAGACGCGTACCGGTGTGCGCGTAACAGAGGCCGCAGTTG
GTGCACACACATGATGATGCTGTTGGAGGCCGTTGTGTTCAGCGAACACC
CTTCTTTTTTTCAAGGCCATCCACAAAGCTTTTTCGCACAAGGATCGAAC
CCATGACCAAAAGCACACCGTACTCTCGAAGCCCTCTCAGCGTCTGTCTC
TATCAGGTGGGCGACTAATGCGTCGGGGGGGGGGAGGAGTGTGCTGCGCT
CTCGGTTTGATGTGAAAGTGCAGGTTGTTTCCTCGACAGGAAAAAAACTG
TATGTATCATGAGCCGATGAACAAAACCCAACCTTCCGTAACACGAACAG
CAGAGGGAGCCCGACCCGGTTGTGACATGCAGCTACTCTCTGTGTTTTCA
GTTGCCGGGGATAGGTTTCTGCTGTCCTCGGAAGCAACGCGGACGACGTG
TACGCCTCTGCTTTCTTTCATAGCTTTGTCAATTTTGAGCTCGGAACAGC
ATTTATTCCTCCGAACTGGTGGTTAATAACCGCGAAAACTGAAACATTCG
TTTGCCCAAACACGTTAATTGCTTTGCATGCGTAGACTATAAGGTCGATT
TGCGGAGAAGCAGCTTTGGCGCTTTATGGGTTATTTCTCCACTGCAACAG
GGATCCACCGCGCCGTTGTTCAACTTTATCTGCTACCTGACATGCAGCAG
CACTTCAACCCGGCCTAATCAACAACGATTGCGCGAATCAAGACCCATGC
ATCGCGTGAAGCGCTCAAGTGAACTATTGTCTTCTCTCCAGAGGAAAAAC
GGCAGTGTCAGTTAGTATCAGATGCCTCTCGCCCCTAAATTGTGCGACTC
GGCGAGCGTACCAACCTATAGCTCAACTCGTGTAGTTGAGGAGCATGTTT
GAGCTTGTTGCGTCTCCGTTCCTCTTTGACACATGCATTTCCTGGCGAAG
CCTCGACACTCGGCGAGTCTTGCACTCGACCCACGGTGCTAACTTGGCTT
CCGTCCCCTCGTCCAAAACCTAGGGAGTCGTGCAACGGAGGACAGTGGGC
GGCGGCGGCGGTGGCGGCGGTGCCCTCACGTCCCTCCGCCCTTCTCTCAA
CCTCCTCGCTCCGCCTTGGCCAGCCGCTGACAAACTAGGCCTTCACGCTC
CAGCTCGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12282:2128..4985-

>mRNA_L-elsbetiae_contig12282.1888.1 ID=mRNA_L-elsbetiae_contig12282.1888.1|Name=mRNA_L-elsbetiae_contig12282.1888.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=630bp|location=Sequence derived from alignment at L-elsbetiae_contig12282:2128..4985- (Laminarionema elsbetiae ELsaHSoW15)
GGTGCCGTGACCGATGAATGCCGACAGCAGTGCAACAGCCGTGGTCGGCC
AAGTCGATGTCGCGAGGCTTCCAGCGAGGTGGTAGACGTTTTCGTTGCCG
GCCTTGGGGCAGTACAGCATAGCCGAGAGTGGGAGAGAGTGGGCGAGGAA
GCGGCTTGGAAGGGAGGCTGCAGCCGCACATTGATAGGAAACGACACCAT
CACGCAGTTCAGGGTGCCGTGACCGATGAATGCCGACAGCAGTGCAACAG
CCGTGGTCGGCCAAGTCGATGTCGCGAGGCTTCCAGCGAGGTGGTAGACG
TTTTCGTTGCCGGCCTTGGGGCAGTACAGCATAGCCGAGAGTGGGAGAGA
GTGGGCGAGGAAGCGGCTTGGAAGGGAGGCTGCAGCCGCACATTGATAGG
AAACGACACCATCACGCAGTTCAGGATGGTGATTTGGGCAGGCAAGACCA
AATGCGGCTGGATTCACGGCGTTGTTCTGGAGGATGTTCGGAGCCTGGAG
GGCAGACTCGAGGGACGTACAAAATAAGATGGTGATTTGGGCAGGCAAGA
CCAAATGCGGCTGGATTCACGGCGTTGTTCTGGAGGATGTTCGGAGCCTG
GAGGGCAGACTCGAGGGACGTACAAAATAA
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