mRNA_L-elsbetiae_contig12281.1886.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12281.1886.1
Unique NamemRNA_L-elsbetiae_contig12281.1886.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: D8LIV7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIV7_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 3.250e-30
Identity = 62/85 (72.94%), Postives = 72/85 (84.71%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQIDGFLRRCDSIPAFLSTLTIELFEKQTFV 255
            YRIDLMKDPTRQ LRLRSMYAE+ESDCL+FQQ+ QS+GGGLELV  P+       +I+ +LR+CDSIPAFLS+LT ELFEKQTFV
Sbjct:  672 YRIDLMKDPTRQMLRLRSMYAEQESDCLVFQQKPQSEGGGLELVETPLAV-QHMDKINMYLRKCDSIPAFLSSLTAELFEKQTFV 755          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: A0A7S3PFY6_9STRA (Hypothetical protein n=1 Tax=Aplanochytrium stocchinoi TaxID=215587 RepID=A0A7S3PFY6_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.290e-13
Identity = 43/89 (48.31%), Postives = 61/89 (68.54%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQID----GFLRRCDSIPAFLSTLTIELFEKQTFV 255
            + ID+ +D   Q LR+RSM+AERE D LLF+ +   +GG L L+        FC +ID     +L++C+S+PAFLSTLT++LFEKQTF+
Sbjct:  357 FMIDMTQDQNPQ-LRVRSMFAEREDDHLLFKWQPDVEGG-LHLLETD-----FCSRIDENIFAYLKKCNSVPAFLSTLTLDLFEKQTFL 438          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: A0A6S7IHR3_PARCT (Mitotic spindle assembly checkpoint MAD1-like n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A6S7IHR3_PARCT)

HSP 1 Score: 70.5 bits (171), Expect = 2.200e-12
Identity = 42/83 (50.60%), Postives = 57/83 (68.67%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQIDGFLRRCDSIPAFLSTLTIELFEKQT 249
            YRID+++D   Q+ +L+SMYAER SDCLLFQ     +   LE  F+  V       ID +L +C+SIPAFLS++T+ELFE+QT
Sbjct:  250 YRIDVVQD---QQYKLKSMYAERSSDCLLFQCNANGKTMLLETDFSLQVKSL----IDQYLIQCNSIPAFLSSVTLELFERQT 325          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: L8GX36_ACACA (Oxidoreductase, short chain dehydrogenase/reductase superfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8GX36_ACACA)

HSP 1 Score: 70.9 bits (172), Expect = 2.320e-12
Identity = 39/84 (46.43%), Postives = 57/84 (67.86%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQIDGFLRRCDSIPAFLSTLTIELFEKQTF 252
            +R+D  ++ + ++ RL+SMYAE+E D L+FQ+  +S G  LEL+ A    C    ++  FL RC SIPAFL+ LT+ LF+KQTF
Sbjct:  576 WRVDYTEERSVKRYRLKSMYAEKEVDELVFQKTAKSSG--LELM-ATDFSCTLDVEVQAFLSRCHSIPAFLANLTLSLFDKQTF 656          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: M4B946_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B946_HYAAE)

HSP 1 Score: 67.0 bits (162), Expect = 5.190e-11
Identity = 41/85 (48.24%), Postives = 52/85 (61.18%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQ-IDGFLRRCDSIPAFLSTLTIELFEKQTF 252
            Y++DL K    + LRLRSMYAE + D LL +       G LEL+ +   FC+   Q +  +L  C S PAFLSTLT+ LFEKQTF
Sbjct:  666 YKVDLKKSNGMEMLRLRSMYAEHDDDDLLIRME---ASGSLELLDSD--FCSRINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTF 745          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: A0A7S1CB74_9STRA (Hypothetical protein n=1 Tax=Bicosoecida sp. CB-2014 TaxID=1486930 RepID=A0A7S1CB74_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 6.150e-11
Identity = 41/89 (46.07%), Postives = 55/89 (61.80%), Query Frame = 1
Query:    1 YRIDLMKDPTRQ--KLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQID----GFLRRCDSIPAFLSTLTIELFEKQT 249
            Y++D++     +  KL LRSMYAERE D LL Q +     GGLEL+        FC +ID     +L  C SIPAFLS+LT++LF++QT
Sbjct:   77 YKVDMVAGSAGKDDKLYLRSMYAEREDDHLLMQMKK----GGLELLETE-----FCKRIDPKMFAYLTTCHSIPAFLSSLTLDLFDRQT 156          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: A0A7S3YG22_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YG22_HETAK)

HSP 1 Score: 65.5 bits (158), Expect = 9.970e-11
Identity = 42/88 (47.73%), Postives = 53/88 (60.23%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQIDG----FLRRCDSIPAFLSTLTIELFEKQTF 252
            Y++D+     R KLRLRSM+AE ESD LLFQ       GGLEL         F  +ID     +L +C+S+PAFLS +T+ LFE QTF
Sbjct:  189 YKLDMGGAHARPKLRLRSMFAENESDDLLFQWGK----GGLELCETD-----FATKIDRKVFVYLHQCNSVPAFLSNVTLNLFEAQTF 267          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: T0Q5N2_SAPDV (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=T0Q5N2_SAPDV)

HSP 1 Score: 65.9 bits (159), Expect = 1.320e-10
Identity = 41/88 (46.59%), Postives = 54/88 (61.36%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFC-PQIDGFLRRCDSIPAFLSTLTIELFEKQTFVPR 261
            Y+IDL K+    +L LRSMYAE E+D + F+  D      LE       FCA   P+  G+L  C+S PAF+ST+T+ LFEKQTF P+
Sbjct:  638 YKIDLKKN----ELSLRSMYAENEADEIKFRLVDDENMALLE-----TDFCASLDPKYLGYLSHCNSPPAFVSTVTLNLFEKQTFQPK 716          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: W2RBQ8_PHYPN (Uncharacterized protein n=46 Tax=Phytophthora TaxID=4783 RepID=W2RBQ8_PHYPN)

HSP 1 Score: 65.9 bits (159), Expect = 1.320e-10
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQID----GFLRRCDSIPAFLSTLTIELFEKQTF 252
            Y++DL K    + LRLRS+YAE + D LL +       G LEL+ +      FC QI+     +L  C S PAFLSTLT+ LFEKQTF
Sbjct:  660 YKVDLRKSNGMELLRLRSVYAEHDDDELLVRMESN---GSLELLDSE-----FCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTF 739          
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Match: W2RDT9_PHYPN (Uncharacterized protein n=93 Tax=Phytophthora parasitica TaxID=4792 RepID=W2RDT9_PHYPN)

HSP 1 Score: 65.9 bits (159), Expect = 1.330e-10
Identity = 41/88 (46.59%), Postives = 52/88 (59.09%), Query Frame = 1
Query:    1 YRIDLMKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCPQID----GFLRRCDSIPAFLSTLTIELFEKQTF 252
            Y++DL K    + LRLRS+YAE + D LL +       G LEL+ +      FC QI+     +L  C S PAFLSTLT+ LFEKQTF
Sbjct:  706 YKVDLRKSNGMELLRLRSVYAEHDDDELLVRMESN---GSLELLDSE-----FCSQINQRVFAYLTTCRSFPAFLSTLTLHLFEKQTF 785          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12281.1886.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIV7_ECTSI3.250e-3072.94Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S3PFY6_9STRA3.290e-1348.31Hypothetical protein n=1 Tax=Aplanochytrium stocch... [more]
A0A6S7IHR3_PARCT2.200e-1250.60Mitotic spindle assembly checkpoint MAD1-like n=1 ... [more]
L8GX36_ACACA2.320e-1246.43Oxidoreductase, short chain dehydrogenase/reductas... [more]
M4B946_HYAAE5.190e-1148.24Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A7S1CB74_9STRA6.150e-1146.07Hypothetical protein n=1 Tax=Bicosoecida sp. CB-20... [more]
A0A7S3YG22_HETAK9.970e-1147.73Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
T0Q5N2_SAPDV1.320e-1046.59Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
W2RBQ8_PHYPN1.320e-1046.59Uncharacterized protein n=46 Tax=Phytophthora TaxI... [more]
W2RDT9_PHYPN1.330e-1046.59Uncharacterized protein n=93 Tax=Phytophthora para... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12281contigL-elsbetiae_contig12281:254..1119 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue7.5e-23
Seed eggNOG ortholog2880.D8LIV7
Preferred nameMAD1L1
KEGG rclassRC00296
KEGG koko:K06638,ko:K06679,ko:K18203,ko:K18438
KEGG ReactionR00191,R01234
KEGG Pathwayko00230,ko04110,ko04111,ko04113,ko04114,ko04914,ko05032,ko05166,ko05203,map00230,map04110,map04111,map04113,map04114,map04914,map05032,map05166,map05203
Hectar predicted targeting categoryother localisation
GOsGO:0000070,GO:0000075,GO:0000228,GO:0000278,GO:0000280,GO:0000775,GO:0000776,GO:0000777,GO:0000778,GO:0000779,GO:0000780,GO:0000793,GO:0000794,GO:0000819,GO:0000922,GO:0002376,GO:0002520,GO:0002682,GO:0002683,GO:0002694,GO:0002695,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005654,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005816,GO:0005819,GO:0005829,GO:0005856,GO:0006810,GO:0006913,GO:0006996,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007093,GO:0007094,GO:0007162,GO:0007275,GO:0007346,GO:0008104,GO:0008150,GO:0008285,GO:0008608,GO:0009607,GO:0009719,GO:0009987,GO:0010564,GO:0010639,GO:0010948,GO:0010965,GO:0012505,GO:0015630,GO:0016043,GO:0022402,GO:0022407,GO:0022408,GO:0030071,GO:0030155,GO:0031570,GO:0031577,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032501,GO:0032502,GO:0032879,GO:0032944,GO:0032945,GO:0032991,GO:0033036,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033047,GO:0033048,GO:0033365,GO:0034501,GO:0034502,GO:0034613,GO:0042127,GO:0042129,GO:0042130,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043515,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044732,GO:0044774,GO:0044877,GO:0045786,GO:0045787,GO:0045839,GO:0045841,GO:0045930,GO:0045931,GO:0046907,GO:0048285,GO:0048513,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048534,GO:0048538,GO:0048731,GO:0048732,GO:0048856,GO:0050000,GO:0050670,GO:0050672,GO:0050789,GO:0050794,GO:0050863,GO:0050865,GO:0050866,GO:0050868,GO:0050896,GO:0051128,GO:0051129,GO:0051169,GO:0051179,GO:0051234,GO:0051249,GO:0051250,GO:0051276,GO:0051303,GO:0051310,GO:0051315,GO:0051640,GO:0051641,GO:0051649,GO:0051656,GO:0051716,GO:0051726,GO:0051783,GO:0051784,GO:0051983,GO:0051985,GO:0060341,GO:0065007,GO:0070013,GO:0070663,GO:0070664,GO:0070727,GO:0071173,GO:0071174,GO:0071216,GO:0071459,GO:0071495,GO:0071840,GO:0072396,GO:0072414,GO:0072417,GO:0072476,GO:0072479,GO:0072485,GO:0072686,GO:0090068,GO:0090231,GO:0090232,GO:0090235,GO:0090266,GO:0090267,GO:0090268,GO:0098687,GO:0098813,GO:0099606,GO:0140014,GO:1901925,GO:1901976,GO:1901978,GO:1901987,GO:1901988,GO:1901990,GO:1901991,GO:1902099,GO:1902100,GO:1903037,GO:1903038,GO:1903047,GO:1903504,GO:1905818,GO:1905819,GO:2000816,GO:2001251
EggNOG free text desc.spindle assembly checkpoint
EggNOG OGsKOG4593@1,KOG4593@2759
EC2.1.1.233,3.1.4.17,3.1.4.35
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009,ko03036
Exons2
Model size264
Cds size249
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12281.1886.1prot_L-elsbetiae_contig12281.1886.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12281 269..1119 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.1041112-UTR-L-elsbetiae_contig12281:253..2681622815426.1041112-UTR-L-elsbetiae_contig12281:253..268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12281 254..268 +
1691682892.1451738-UTR-L-elsbetiae_contig12281:253..2681691682892.1451738-UTR-L-elsbetiae_contig12281:253..268Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12281 254..268 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815426.1165893-CDS-L-elsbetiae_contig12281:268..3821622815426.1165893-CDS-L-elsbetiae_contig12281:268..382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12281 269..382 +
1691682892.1652286-CDS-L-elsbetiae_contig12281:268..3821691682892.1652286-CDS-L-elsbetiae_contig12281:268..382Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12281 269..382 +
1622815426.131804-CDS-L-elsbetiae_contig12281:984..11191622815426.131804-CDS-L-elsbetiae_contig12281:984..1119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12281 985..1119 +
1691682892.1779037-CDS-L-elsbetiae_contig12281:984..11191691682892.1779037-CDS-L-elsbetiae_contig12281:984..1119Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12281 985..1119 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12281.1886.1

>prot_L-elsbetiae_contig12281.1886.1 ID=prot_L-elsbetiae_contig12281.1886.1|Name=mRNA_L-elsbetiae_contig12281.1886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=83bp
MKDPTRQKLRLRSMYAERESDCLLFQQRDQSQGGGLELVFAPVVFCAFCP
QIDGFLRRCDSIPAFLSTLTIELFEKQTFVPR*
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mRNA from alignment at L-elsbetiae_contig12281:254..1119+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12281.1886.1 ID=mRNA_L-elsbetiae_contig12281.1886.1|Name=mRNA_L-elsbetiae_contig12281.1886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=866bp|location=Sequence derived from alignment at L-elsbetiae_contig12281:254..1119+ (Laminarionema elsbetiae ELsaHSoW15)
TACCGGATCGACCTCATGAAGGATCCCACCCGACAGAAGCTTCGGTTACG GTCCATGTACGCCGAGCGCGAGTCGGACTGCCTTTTGTTCCAGCAGAGGG ACCAGAGCCAGGGAGGTGGGCTGGAGTTGGTGACGACACCTTTCGCTGAA GAGCACACGGACAAGGTGCTGCTGCTGAACAAACATTCTATGTGTCTGGG AGGTTTTCTCCTGCGATGTTTTGTTTTACAGTTGTGATTGGTTGGACAGA ATTTTCTTTGGTCATCGTTTGGCGGACCAACGCCGAGTACACATCGACAA CTGCAGCACGTGGGACACAGAAATGGCGCGAAGATTTCGCTGCCGAGAGT GGCTTTGGTTTTGGTTTTCATCGGTGCGGCGAACACTCATGGACGGGAGA AATTACGGGGAGATGGGTCCTCACGTTTTTTGAGCGCACTCGTGCTGAGT TTGATACACATAAAGTATGTATTTACGTGTTTTAAGGTGTTTAACCGTCT GCAGTGAAGAGTCTTCAAAAGTTACGGAGAAACCGCGGGCTGTACGTCTT GAGAAAGCTTTCAGCTTTGCAAGTATCGATTATACGGGCTAATGTGAAGA AACAACAACAACATACTGTTGTAGGTGAAGCCGCCTCTGTCGCAGTAATT TGACTCTGGAAGGCCGGATGATTTTGTTGTCTTTCAAAATATGTTTTGAG ATTCACCCCTCGCCCCCAAACACCCCTCAAGGTCTTTGCGCCCGTTGTTT TTTGTGCGTTCTGTCCGCAGATTGACGGGTTCCTCCGCAGGTGCGACTCC ATCCCGGCCTTCCTGAGCACCCTCACCATCGAGCTCTTCGAGAAGCAGAC CTTCGTGCCTCGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12281:254..1119+

>mRNA_L-elsbetiae_contig12281.1886.1 ID=mRNA_L-elsbetiae_contig12281.1886.1|Name=mRNA_L-elsbetiae_contig12281.1886.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=498bp|location=Sequence derived from alignment at L-elsbetiae_contig12281:254..1119+ (Laminarionema elsbetiae ELsaHSoW15)
ATGAAGGATCCCACCCGACAGAAGCTTCGGTTACGGTCCATGTACGCCGA
GCGCGAGTCGGACTGCCTTTTGTTCCAGCAGAGGGACCAGAGCCAGGGAG
GTGGGCTGGAGTTGATGAAGGATCCCACCCGACAGAAGCTTCGGTTACGG
TCCATGTACGCCGAGCGCGAGTCGGACTGCCTTTTGTTCCAGCAGAGGGA
CCAGAGCCAGGGAGGTGGGCTGGAGTTGGTCTTTGCGCCCGTTGTTTTTT
GTGCGTTCTGTCCGCAGATTGACGGGTTCCTCCGCAGGTGCGACTCCATC
CCGGCCTTCCTGAGCACCCTCACCATCGAGCTCTTCGAGAAGCAGACCTT
CGTGCCTCGGTGAGTCTTTGCGCCCGTTGTTTTTTGTGCGTTCTGTCCGC
AGATTGACGGGTTCCTCCGCAGGTGCGACTCCATCCCGGCCTTCCTGAGC
ACCCTCACCATCGAGCTCTTCGAGAAGCAGACCTTCGTGCCTCGGTGA
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