mRNA_L-elsbetiae_contig12276.1880.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12276.1880.1
Unique NamemRNA_L-elsbetiae_contig12276.1880.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: D7FUS3_ECTSI (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS3_ECTSI)

HSP 1 Score: 252 bits (643), Expect = 4.820e-75
Identity = 129/192 (67.19%), Postives = 146/192 (76.04%), Query Frame = 1
Query:    4 QDLADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRTVEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPPKSRYSDXXXXXXXXXXXXXXALGGQAGGTGADERSSEVARFAIVEAICECTGVSTELAAYALQLSK 579
            +DLA+ADA AFVE+SDGMFA+VE PS HLVRLWI VKPWRLYEGLGSRTVEALGLDP KGVM MLTTDQYYTLS+KCP V+WLRQV P+KM+ A+  SDGSVG++F LQWMLRKRLEEEL  NWPP+SRY+D             X         GA + + E  R AI EAIC+CT VS ELAAYALQ S+
Sbjct:  109 KDLAEADAGAFVEESDGMFARVETPSTHLVRLWIGVKPWRLYEGLGSRTVEALGLDPLKGVMVMLTTDQYYTLSNKCPGVRWLRQVAPEKMHTAAKCSDGSVGDTFSLQWMLRKRLEEELKQNWPPRSRYADEEEAEGDPHRAGGXXXXXXXXXXGAGDPNMEATRLAI-EAICDCTAVSAELAAYALQFSQ 299          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: A0A6H5JHW3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHW3_9PHAE)

HSP 1 Score: 184 bits (466), Expect = 7.610e-51
Identity = 104/190 (54.74%), Postives = 124/190 (65.26%), Query Frame = 1
Query:    4 QDLADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRTVEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPPKSRYSDXXXXXXXXXXXXXXALGGQAGGTGADERSSEVARFA-IVEAICECTGVSTELAAYALQ 570
            +DLA+ DA A  E  DG+ A+V+A S + +RLW+ V+PWRLY  L SRTVEALGLDP KGVM MLTTDQ+YTLS+  PEVKWLRQVHPDK+   SMR DGS G++F L+W LRKRLEE+LS NWPP  R +                 G  A   G   ++ E   F   V  +CECTGV  ELA YALQ
Sbjct:    9 KDLANGDALAINEGLDGVAARVQARSTYQLRLWVVVQPWRLYNHLSSRTVEALGLDPMKGVMVMLTTDQHYTLSTVRPEVKWLRQVHPDKVE-GSMRCDGSAGDTFSLEWTLRKRLEEDLSRNWPPAPRCARSPDDERD--------AGTCAREEGLVCKNDERKCFKDTVRRMCECTGVVEELAVYALQ 189          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: A0A6H5J7F0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J7F0_9PHAE)

HSP 1 Score: 124 bits (312), Expect = 5.190e-31
Identity = 83/215 (38.60%), Postives = 110/215 (51.16%), Query Frame = 1
Query:   13 ADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRT-VEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPPKSRYSDXXXXXXXXXXXXXXALGGQ--------------AGGTGADERSSE----------VARFAIVEAICECTGVSTELAAYALQLSKV 582
            A ADAD F++  DG+ A+V+  SA L  LW+ + P RL EG    T VE +GLDP KGV+ MLTTD  YT SSKCP+V W RQV    M+ + M + GS+GE+FP +WML  +++ EL+  W      S                +GG               A  TGA E +++           A    V+ ICE   VS   AAY L++SKV
Sbjct:   91 AQADADEFIDGVDGITARVQLSSA-LTNLWVYIDPRRLSEGRAPGTRVETVGLDPRKGVVVMLTTDHDYTSSSKCPKVLWARQVARTAMDMSKMDTYGSIGETFPHEWMLCGKIQVELTRAWSQGMGPSRTTDEHVKGGHQSEQGMGGDVCHDGGSPVREGRVAAATGAGEGTAKNTTDGGKLHSAATRRAVKMICESMVVSAGFAAYVLRISKV 304          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: A0A6H5JD35_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD35_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 2.640e-30
Identity = 66/123 (53.66%), Postives = 85/123 (69.11%), Query Frame = 1
Query:    7 DLADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRTVEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNW 375
            DLA ADADA     +GMFAKVEA +  L+RLW+CV+  RL+EGL +R VEALGLDP+K VM M TTDQ YT   + P+V+W RQV P K     +  +G +GE FPLQ  L ++L+E+L+  W
Sbjct:   56 DLAKADADALNVDVEGMFAKVEAHTPTLIRLWVCVEHSRLFEGLATRAVEALGLDPSKDVMVMFTTDQDYT-GCRRPKVQWARQVDPVKSKADDLCPEGRIGEIFPLQGTLCQKLDEDLTGMW 177          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: D7G899_ECTSI (UBA/TS-N domain containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G899_ECTSI)

HSP 1 Score: 124 bits (310), Expect = 3.070e-29
Identity = 65/124 (52.42%), Postives = 83/124 (66.94%), Query Frame = 1
Query:    7 DLADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRTVEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWP 378
            DLA ADADA     +GMFAKVEA ++ L+RLW+CV+  RL+EGL +  VEALGLDP K VM M TTDQ Y    + P+V+W RQV P K     +  +G +GE FPLQ  L ++L+E+L   WP
Sbjct:   49 DLAKADADALNVDVEGMFAKVEAHTSTLIRLWVCVEHSRLFEGLATSAVEALGLDPAKDVMVMFTTDQDYPGCVR-PKVQWARQVDPVKSKADDLCPEGRIGEIFPLQGTLCQKLDEDLKGMWP 171          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: D8LFE1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFE1_ECTSI)

HSP 1 Score: 120 bits (302), Expect = 4.240e-29
Identity = 68/132 (51.52%), Postives = 78/132 (59.09%), Query Frame = 1
Query:  193 MLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPPKSRYS---DXXXXXXXXXXXXXXALGGQAGGTGADERSSEVARFAIVEAICECTGVSTELAAYALQLSK 579
            MLTTDQ+YTLS+  PEVKW+RQVHPDKM   SMR DGSVG++F L+WMLRKRLEE+LS NWPP  R +   D                    G    D           V  +CECTGV  ELA YALQ+SK
Sbjct:    1 MLTTDQHYTLSTVRPEVKWVRQVHPDKMEE-SMRCDGSVGDTFSLEWMLRKRLEEDLSRNWPPAPRCARSPDDKRDPGTSAREEGLVCKNDEGKCSKDT----------VRRMCECTGVVEELAVYALQVSK 121          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: D7FUS6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUS6_ECTSI)

HSP 1 Score: 117 bits (293), Expect = 2.290e-28
Identity = 80/216 (37.04%), Postives = 108/216 (50.00%), Query Frame = 1
Query:   13 ADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRT-VEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPPKSRYSDXXXXXXXXXXXXXXALGGQA----------GG---------------TGADERSSEVARFAIVEAICECTGVSTELAAYALQLSKV 582
            A+ DAD F++  DG+ A V+  S  L  +W+ V P RL EG    T V+ +GLDP+KGV+ MLTT   Y  S K P+VKW RQV P  M++  M + GS G++FP +WML  +++ +L+  W    R S                +GG            GG               TG  +  S   R A V+ ICE T VS  LAAY L++SKV
Sbjct:   92 AEVDADEFIDGVDGISASVQL-SPTLTNVWVYVDPRRLSEGRAPGTCVKTVGLDPSKGVVVMLTTPHDYMSSGKIPQVKWARQVAPTAMDKQKMDTYGSTGKTFPHEWMLCGKIQAQLTRAWSQGKRVSRTSDEHVKGGDRPEQEMGGDVCRDGGSQVREGGVTAATTAGEGRANEETGGGKLDSAAIRRA-VKMICESTVVSAGLAAYVLRISKV 305          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: D7G896_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G896_ECTSI)

HSP 1 Score: 117 bits (294), Expect = 4.120e-27
Identity = 83/217 (38.25%), Postives = 108/217 (49.77%), Query Frame = 1
Query:   13 ADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRT-VEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNWPP---KSRYSDXXXXXXXXXXXXXXALGGQAGG------------------------TGADERSSEVARFAIVEAICECTGVSTELAAYALQLSK 579
            A ADAD F++  DG+ A+V+  S  L  LW+ + P RL EG    T VE +GLDP+KGV+ MLTTD  YT SSKCP+V W RQV    MN+  M + GS+GE+FP +WML  +++ EL+  W      SR +D                  + GG                        T   E  S   R A V+ ICE   VS   AAY L++SK
Sbjct:   89 AHADADEFIDGVDGITARVQLSSV-LTNLWVYIDPRRLSEGRALGTSVETVGLDPSKGVVVMLTTDYGYTSSSKCPKVLWARQVARAAMNKPKMDTYGSIGETFPHEWMLCGKIQAELTRAWSQGMGPSRTADEHVKGGHQSEQGMDGDVCRDGGSPVREGRVAAATAAGEXXXXAKKKTDGGELDSAATRRA-VKMICEAMVVSAGFAAYVLRISK 303          
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Match: A0A6H5JA28_9PHAE (PARP catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA28_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 4.470e-25
Identity = 77/215 (35.81%), Postives = 108/215 (50.23%), Query Frame = 1
Query:   13 ADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRT-VEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSDGSVGESFPLQWMLRKRLEEELSHNW-------------------PPKSRYSDXXXXXXXXXXXXXXALGGQAGG------TGADERSSEVARFAIVEAICECTGVSTELAAYALQLSK 579
            A+ DAD F++  DG+ A+V    A L  +W+ V P RL EG  S T V+ +GLDP+KGV+ MLTT   Y  S + P+VKW RQV P  M++  M + GS+G++FP +WML  +++ +L+  W                   P +   +D                   AG       TG  +  S   R A V+ ICE T VS  LAAY L++SK
Sbjct:   92 AEVDADEFIDGVDGISARVHLSPA-LTNIWVYVGPRRLSEGRASGTCVKTVGLDPSKGVLVMLTTPHDYISSGEFPQVKWARQVAPAAMDKQKMDTYGSIGKTFPHEWMLCGKIKAQLTRAWSQGKGTSRTSGEHAKGGDRPEREMGADVCRDGGSPAREGGVTAAMTAGEGRANEETGGGKLDSAAIRRA-VKMICESTVVSAGLAAYVLRISK 304          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12276.1880.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7FUS3_ECTSI4.820e-7567.19PARP catalytic domain-containing protein n=1 Tax=E... [more]
A0A6H5JHW3_9PHAE7.610e-5154.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J7F0_9PHAE5.190e-3138.60Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JD35_9PHAE2.640e-3053.66PARP catalytic domain-containing protein n=1 Tax=E... [more]
D7G899_ECTSI3.070e-2952.42UBA/TS-N domain containing protein n=1 Tax=Ectocar... [more]
D8LFE1_ECTSI4.240e-2951.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUS6_ECTSI2.290e-2837.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G896_ECTSI4.120e-2738.25Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JA28_9PHAE4.470e-2535.81PARP catalytic domain-containing protein n=1 Tax=E... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12276contigL-elsbetiae_contig12276:3340..5612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score252.7
Seed ortholog evalue1.4e-64
Seed eggNOG ortholog2880.D7FUS3
Preferred namePARP8
KEGG koko:K15258
Hectar predicted targeting categoryother localisation
GOsGO:0005575,GO:0005622,GO:0005623,GO:0007275,GO:0007399,GO:0008150,GO:0009987,GO:0010720,GO:0010769,GO:0010770,GO:0010975,GO:0010976,GO:0022008,GO:0022603,GO:0022604,GO:0030154,GO:0031344,GO:0031346,GO:0032501,GO:0032502,GO:0044464,GO:0045595,GO:0045597,GO:0045664,GO:0045666,GO:0048518,GO:0048522,GO:0048699,GO:0048731,GO:0048814,GO:0048856,GO:0048869,GO:0050767,GO:0050769,GO:0050773,GO:0050775,GO:0050789,GO:0050793,GO:0050794,GO:0051094,GO:0051128,GO:0051130,GO:0051239,GO:0051240,GO:0051960,GO:0051962,GO:0060284,GO:0065007,GO:0120035,GO:1900006,GO:2000026
EggNOG free text desc.NAD ADP-ribosyltransferase activity
EggNOG OGs28HD2@1,2QPRC@2759
EC2.4.2.30
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons3
Model size597
Cds size597
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12276.1880.1prot_L-elsbetiae_contig12276.1880.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12276 3340..5612 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.4260302-CDS-L-elsbetiae_contig12276:3339..36311622815425.4260302-CDS-L-elsbetiae_contig12276:3339..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 3340..3631 -
1691682891.7030282-CDS-L-elsbetiae_contig12276:3339..36311691682891.7030282-CDS-L-elsbetiae_contig12276:3339..3631Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 3340..3631 -
1622815425.4408307-CDS-L-elsbetiae_contig12276:4548..46641622815425.4408307-CDS-L-elsbetiae_contig12276:4548..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 4549..4664 -
1691682891.7161589-CDS-L-elsbetiae_contig12276:4548..46641691682891.7161589-CDS-L-elsbetiae_contig12276:4548..4664Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 4549..4664 -
1622815425.4530294-CDS-L-elsbetiae_contig12276:5423..56121622815425.4530294-CDS-L-elsbetiae_contig12276:5423..5612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 5424..5612 -
1691682891.7262015-CDS-L-elsbetiae_contig12276:5423..56121691682891.7262015-CDS-L-elsbetiae_contig12276:5423..5612Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12276 5424..5612 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12276.1880.1

>prot_L-elsbetiae_contig12276.1880.1 ID=prot_L-elsbetiae_contig12276.1880.1|Name=mRNA_L-elsbetiae_contig12276.1880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=199bp
MQDLADADADAFVEKSDGMFAKVEAPSAHLVRLWICVKPWRLYEGLGSRT
VEALGLDPTKGVMAMLTTDQYYTLSSKCPEVKWLRQVHPDKMNRASMRSD
GSVGESFPLQWMLRKRLEEELSHNWPPKSRYSDDEDDDDASGGGGGGALG
GQAGGTGADERSSEVARFAIVEAICECTGVSTELAAYALQLSKVYMYI*
back to top

mRNA from alignment at L-elsbetiae_contig12276:3340..5612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12276.1880.1 ID=mRNA_L-elsbetiae_contig12276.1880.1|Name=mRNA_L-elsbetiae_contig12276.1880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2273bp|location=Sequence derived from alignment at L-elsbetiae_contig12276:3340..5612- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGACCTCGCGGACGCCGACGCCGACGCGTTCGTGGAGAAGTCCGA CGGCATGTTCGCCAAGGTGGAGGCGCCCTCCGCACACCTGGTGCGCCTCT GGATCTGCGTGAAGCCGTGGAGGTTGTACGAGGGGCTCGGCTCGAGGACG GTCGAGGCGCTCGGCCTGGATCCCACCAAGGGAGTCATGGTGCGCCGCTG CTGCTGTTGCTGTTGTTGTTGTTGTTGTTGTTGTCGTTTGTTGCTGTTGT TTGGTGTTGTTGTTGTTGTTGTTGTTTGTTGGTGGTGTGTGCTTGTTTGT TGTTGTTGGTGGTGGTGTTTGTTGTTGTTGTATGTATGTATGTATGTATA CAAGTTCCCCTTTTCAGACGTTGCTCATGACCGGAACAATTCAGGGGGTG AAGCAAGAGAATAGTTGTTGACTGCTGTTCGAGTTGCGCAACACTACGAG TTGCCGTGTCACACTAAAGAGCCAGAACTGGCGTGTGTCGCCACGTGCGT CGCCACGTGCGTCGCCACGTGCGTCGCCAGCGTGAAAAGTCTCCTGAAAA GCCTGGTTCCAGTGCCCTTAAGCGGCTTGGTCAACAGCCCACAGACCCTA CCAACACCTAGAGAAAACAGTTTGAAAAAGTCATATCGCAGAGAACCCCC CCGAATTTGCTGTGGTGTTGTCATTTTTTTCCTATATGTAGTAGGAACTC TGCGCTGCCTGTCCAAAGAACAGATGGCTGTTTTTTCAGTCTAGATGGTT CGTCAAACACGTGCCCCCCCCCCCCCCCACCCCCGGACCCCTCACCCCAC TGCCCAAACCACCCCACCCACCCACCGCCGCATCAACGAGCCNNNNNNNN NNTGTGTTTTTTTTTTGTCTAGCTGGGTCGCCCAACACGTGCCCCCCCCC CCCCCTCCCCGCCACCCGGGGCCCCCCCCCCCCCCCCCCCCCCCCCAGGC GATGCTAACGACCGATCAGTACTACACCCTGTCCAGCAAGTGCCCGGAGG TGAAGTGGTTGCGCCAGGTGCACCCTGACAAGATGAACCGGGCCTCCATG CGCAGCGACGGGAGGTATGTTTGTGATTCACGCCCCTCCCCCCCACCGTG TGTGTGTGTGTGAGTGTGTGTGTGGGGCACAGCAGACGCCTACACCATGA AAAATGTTAGGTTATGCCTGTTTACCTCCTCGTTTTTTTTTTTTTGGTCT CTTCCGGCAGAGAGAGAAAGAGGGGAACGTTTTGCTCTCGTTTGTTGTTG TGCGATGGGCAGCACTCCAGATTGTCGCTCTCTGGGAGTTGCGACCTCGA GGAGCGTTGCCATGCTCGACATTTTGGCGGGTCTCTGCCTGTGCGTTTCC CGTCCTACGTGAGACAAGCACACAACGACAATTGCCACGCCATTTTTTTG TAGGTAAATAAAAAAAAATCTTCAATTACACAAGGTAGAAATGCCGTTTT GGCAAAACCGCGCACCCGTCAGCCGCGACATGCGTGCAGCTATGTGCAAC AACGGCAACACCACGCAAACGAAACGTTGCACAACAGCAACAACAACAAC AGCAGCAGCAGCAACAACAGCGGCAAACGATAGCGGCAACAAAACAAGAA TCACACGTTCTTCAACAGCAACATGGGGGCAAAAACAAAAAAGTACCGTA GGTGACACAAGATACCACCCCCCCTGGACAGATTTTCAAAGCTCGATCCC TCCCCAGCAAGAAAAGTGCCAGCGCCGAGAGGGATGGCGTTGGAAAGATC TAGTCGAGGGCTGTCCGAAAATGTGCTGTTTGGTGTGCTGGCACCCTCTT CGTTACGAGTAATGGAGCTCTAAAATTCGGTCCAGGAGGTGTGCTATCTT GTGTCATCTACGGTAATACTCTCACCACCGCAGCAGCACCACCACCGGCG ACGACTCACGCACGCACGCACGCACGCACGCACGCCGACCCTCCTCCTCC TCCTCCGCAACGAAACAAACCAACCAATCAGCGTCGGCGAGAGCTTCCCC CTCCAGTGGATGCTCCGCAAGAGGCTCGAGGAAGAGTTGTCCCACAACTG GCCACCCAAGTCCCGTTACTCCGACGACGAAGACGATGACGACGCCAGCG GCGGCGGCGGCGGCGGCGCACTAGGTGGCCAGGCCGGCGGCACGGGGGCA GACGAGCGCAGCAGCGAGGTGGCCCGCTTCGCGATCGTCGAGGCCATCTG CGAGTGCACCGGCGTGTCGACGGAGCTCGCCGCGTACGCCCTGCAACTTT CCAAGGTATATATGTACATATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12276:3340..5612-

>mRNA_L-elsbetiae_contig12276.1880.1 ID=mRNA_L-elsbetiae_contig12276.1880.1|Name=mRNA_L-elsbetiae_contig12276.1880.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1194bp|location=Sequence derived from alignment at L-elsbetiae_contig12276:3340..5612- (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGGACCTCGCGGACGCCGACGCCGACGCGTTCGTGGAGAAGTCCGA
CGGCATGTTCGCCAAGGTGGAGGCGCCCTCCGCACACCTGGTGCGCCTCT
GGATCTGCGTGAAGCCGTGGAGGTTGTACGAGGGGCTCGGCTCGAGGACG
GTCGAGGCGCTCGGCCTGGATCCCACCAAGGGAGTCATGATGCAGGACCT
CGCGGACGCCGACGCCGACGCGTTCGTGGAGAAGTCCGACGGCATGTTCG
CCAAGGTGGAGGCGCCCTCCGCACACCTGGTGCGCCTCTGGATCTGCGTG
AAGCCGTGGAGGTTGTACGAGGGGCTCGGCTCGAGGACGGTCGAGGCGCT
CGGCCTGGATCCCACCAAGGGAGTCATGGCGATGCTAACGACCGATCAGT
ACTACACCCTGTCCAGCAAGTGCCCGGAGGTGAAGTGGTTGCGCCAGGTG
CACCCTGACAAGATGAACCGGGCCTCCATGCGCAGCGACGGGAGGCGATG
CTAACGACCGATCAGTACTACACCCTGTCCAGCAAGTGCCCGGAGGTGAA
GTGGTTGCGCCAGGTGCACCCTGACAAGATGAACCGGGCCTCCATGCGCA
GCGACGGGAGCGTCGGCGAGAGCTTCCCCCTCCAGTGGATGCTCCGCAAG
AGGCTCGAGGAAGAGTTGTCCCACAACTGGCCACCCAAGTCCCGTTACTC
CGACGACGAAGACGATGACGACGCCAGCGGCGGCGGCGGCGGCGGCGCAC
TAGGTGGCCAGGCCGGCGGCACGGGGGCAGACGAGCGCAGCAGCGAGGTG
GCCCGCTTCGCGATCGTCGAGGCCATCTGCGAGTGCACCGGCGTGTCGAC
GGAGCTCGCCGCGTACGCCCTGCAACTTTCCAAGGTATATATGTACATAT
AGCGTCGGCGAGAGCTTCCCCCTCCAGTGGATGCTCCGCAAGAGGCTCGA
GGAAGAGTTGTCCCACAACTGGCCACCCAAGTCCCGTTACTCCGACGACG
AAGACGATGACGACGCCAGCGGCGGCGGCGGCGGCGGCGCACTAGGTGGC
CAGGCCGGCGGCACGGGGGCAGACGAGCGCAGCAGCGAGGTGGCCCGCTT
CGCGATCGTCGAGGCCATCTGCGAGTGCACCGGCGTGTCGACGGAGCTCG
CCGCGTACGCCCTGCAACTTTCCAAGGTATATATGTACATATAG
back to top