mRNA_L-elsbetiae_contig1227.1878.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1227.1878.1
Unique NamemRNA_L-elsbetiae_contig1227.1878.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: D8LIT8_ECTSI (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LIT8_ECTSI)

HSP 1 Score: 388 bits (996), Expect = 1.060e-125
Identity = 272/411 (66.18%), Postives = 289/411 (70.32%), Query Frame = 1
Query:   16 MRAERKQRRKLARETRVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTS------SAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTL--------------AAAAAADAGSGDEGT---PPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            MR ERK+RRKLAR+ R LNVGRAKSVRRAG+STE VGLEALHPPQGPPGSGAPALSGLPD+SKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERAL QAGL SAAEVDAVAVTVGPGLEICLRVG EKAKALAA++GKPFVA+HHLEAHALLARK+F    A+  SA                            + DVSAAAA  S APS+ +FA AFTAAV+DVS       XXX                 G VSA XXXXXXXXXXXX X        DV           +S  AP                AA +   A   D+ T   PPLEFPFLALLVSGGHCQLLLCEGVG+YTVLGGTVDDALGEAYDK
Sbjct:    1 MREERKRRRKLARDARKLNVGRAKSVRRAGTSTEKVGLEALHPPQGPPGSGAPALSGLPDVSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALEQAGLGSAAEVDAVAVTVGPGLEICLRVGAEKAKALAAEYGKPFVAIHHLEAHALLARKSFTETRASSPSAXXXXXXXXXXXXX-----------XXXRSSDVSAAAAVASSAPSTSAFATAFTAAVSDVSASXXXXXXXXXXXXXXXXXXXXXXXGPGDVSAXXXXXXXXXXXXXFXAAFSAAVTDVSSASARA----ASGVAPPAXXXXXXXXXXXCKGAAGSGTSAVDDDDDTGETPPLEFPFLALLVSGGHCQLLLCEGVGVYTVLGGTVDDALGEAYDK 396          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A835YKI5_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKI5_9STRA)

HSP 1 Score: 205 bits (522), Expect = 8.720e-59
Identity = 136/325 (41.85%), Postives = 155/325 (47.69%), Query Frame = 1
Query:  205 PFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            PFTVLGIETSCDDT AAVVRSDG +LGEA+A Q D+HE+WGGVVPGLAR++H  ++D +V  AL QAG+ASAA+VDAVAVTVGPGLEICLRVG EKAKALA +H KPFVAVHHLEAH +LAR                                                                                               G+ A                                                       +EG  P  FPFLALLVSGGHCQLLLCEGVG +++LGGTVDDALGEA+DK
Sbjct:   18 PFTVLGIETSCDDTGAAVVRSDGTILGEALASQQDIHEKWGGVVPGLAREAHVNEIDRIVAAALAQAGMASAAQVDAVAVTVGPGLEICLRVGCEKAKALALEHAKPFVAVHHLEAHVMLARA----------------------------------------------------------------------------------------------GLGA-------------------------------------------------------EEGLAPPAFPFLALLVSGGHCQLLLCEGVGRFSILGGTVDDALGEAFDK 193          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A7S2YT17_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YT17_9STRA)

HSP 1 Score: 199 bits (505), Expect = 3.370e-55
Identity = 145/373 (38.87%), Postives = 178/373 (47.72%), Query Frame = 1
Query:   61 RVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            R L VG AK+V R G   +T      + P G  G    A+SGLPD +K FTVLGIE+SCDDT AAVVRSDG +LGEA+A Q ++HE+WGGVVPGLARD+H  ++D VV +AL  AG++SAAEVDA+ VTVGPGLEICLRVG+ KA  LA+++ KPFV +HHLEAH L+AR                                                                                      +PSS S+                                            H   T    A+         T  +EFPF ALLVSGGHCQ++ C GVG YT+LGGT DD+LGEA+DK
Sbjct:   84 RKLKVGIAKAVDR-GQFADT------YKPGGADGKTFQAISGLPDRTKLFTVLGIESSCDDTGAAVVRSDGVILGEALASQQEIHEQWGGVVPGLARDAHQEQIDSVVSQALTNAGMSSAAEVDAIGVTVGPGLEICLRVGSTKAIQLASEYQKPFVGIHHLEAHILMAR--------------------------------------------------------------------------------------LPSSISNE---------------------------------------EELIHITATEDTHAS---------TRAIEFPFFALLVSGGHCQMMRCSGVGNYTILGGTTDDSLGEAFDK 315          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A7S4J610_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4J610_9STRA)

HSP 1 Score: 198 bits (503), Expect = 9.300e-55
Identity = 138/369 (37.40%), Postives = 175/369 (47.43%), Query Frame = 1
Query:   73 VGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            +G AK+V R   +T       ++ P G  G    A+SGLPD +KPFTVLGIE+SCDDT AAVVRSDG +LGEA+A Q ++HEEWGG+VPGLAR +H  K+DG++  AL  AG++S  +VDA+ VTVGPGLEICLRVG  KA+ LA ++GKPFV +HHLEAH L+AR  +                                       GD            S + F    + A  D+                                                                                   E    +EFPFLALLVSGGHCQLL C  +G Y++LGGT+DD+LGEA+DK
Sbjct:  113 IGMAKAVDRGQWAT-------VYKPGGEDGGTFTAISGLPDRTKPFTVLGIESSCDDTGAAVVRSDGVILGEALASQHEIHEEWGGIVPGLARTAHEEKIDGIIHEALQNAGMSSVEDVDAIGVTVGPGLEICLRVGCNKARDLAEKYGKPFVGIHHLEAHILMARLPY---------------------------------------GD------------SDDLF---ISPATEDM----------------------------------------------------------------------------------HEAARAIEFPFLALLVSGGHCQLLKCLDIGKYSILGGTMDDSLGEAFDK 338          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A7S2V5H1_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V5H1_9STRA)

HSP 1 Score: 197 bits (500), Expect = 2.300e-54
Identity = 146/377 (38.73%), Postives = 167/377 (44.30%), Query Frame = 1
Query:   61 RVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLAR----KAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            R + VG AKSV R G  ++       +PP   P     A SGLPDL+KPFTVLGIETSCDDT  AVVRSDGA+LGEA+ GQAD+H EWGGVVP LA D+H   +   V+ AL +AGL S A+VDA+ VTVGPGLE+CLRVG   AKALA +H  PFV VHHLEAH L+AR       PP P  D                                                          V D                                                                                         L +PFLALLVSGGHCQLLL EG G Y+V+GGT+DDALGEAYDK
Sbjct:   72 RRIGVGLAKSVEREGVYSK------FNPPSVFPSDPPEAKSGLPDLTKPFTVLGIETSCDDTGVAVVRSDGAILGEAVVGQADIHAEWGGVVPNLAMDAHKSAIQSTVQLALERAGLKSPADVDAIGVTVGPGLEVCLRVGAGAAKALALEHRLPFVGVHHLEAHCLMARIPSSPLVPPTPYQDQKE------------------------------------------------------LVED----------------------------------------------------------------------------------------ELVYPFLALLVSGGHCQLLLVEGAGRYSVVGGTLDDALGEAYDK 300          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A7S2RZ45_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2RZ45_9STRA)

HSP 1 Score: 194 bits (494), Expect = 3.150e-54
Identity = 144/387 (37.21%), Postives = 181/387 (46.77%), Query Frame = 1
Query:   19 RAERKQRRKLARETRVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            R +RK+ +K  ++ R   +G AK+V R   S        ++ P G  G+   A SGLPD ++PFTVLGIE+SCDDT AAVVRSDG +LGE++A Q  +HEEWGGVVPGLA+ +H  K+D V+E A+  AGL+S  E+DA+ VTVGPGLEICLRVG  KA+ LA Q  KPFVA+HHLEAH L+AR   PP      S S                                                                                                            D+            SH                 E    ++FPFLALLVSGGHCQ+L C GVG Y+++GGT+DD+LGEAYDK
Sbjct:   15 RIKRKRNKKAGKDKRSEFIGMAKAVDRGQWSV-------VYSPGGKDGTSFVAKSGLPDKTRPFTVLGIESSCDDTGAAVVRSDGVILGESLASQHKIHEEWGGVVPGLAKLAHEEKIDVVIEEAIQNAGLSSIDEIDAIGVTVGPGLEICLRVGCNKARELAIQFQKPFVAIHHLEAHILMAR--LPPQKKEQQSTS-----------------------------------------------------------------------------------------------------------IDIV-----------SH-----------------ESNCAIQFPFLALLVSGGHCQMLKCLGVGRYSIIGGTIDDSLGEAYDK 257          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: W7TQK2_9STRA (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TQK2_9STRA)

HSP 1 Score: 190 bits (483), Expect = 1.340e-51
Identity = 143/338 (42.31%), Postives = 156/338 (46.15%), Query Frame = 1
Query:  175 ALSGLPDLSKP---FTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            A SGLP  S     FTVLGIETSCDDT  AVVRSDG +LGEA+A Q  +HE+WGGVVPGLARD+HA  +D +VE AL +AG+AS AEV AV VTVGPGLEICLRVGTE AKALA    KPFVAVHHLEAH L+AR   P                                                S  P  E   AA T+A               S P+P                                                                      P   FPFLALLVSGGHC LL C GVG Y  LGGT+DDALGEAYDK
Sbjct:  134 AASGLPTTSPEDPVFTVLGIETSCDDTGVAVVRSDGVILGEALASQYKIHEQWGGVVPGLARDAHASVIDSMVEEALKKAGMASVAEVGAVGVTVGPGLEICLRVGTETAKALATTFHKPFVAVHHLEAHCLMARFGQP----------------------------------------------LDSREPKEE---AAGTSA---------------SSPIP----------------------------------------------------------------------PQTRFPFLALLVSGGHCMLLECWGVGRYRTLGGTLDDALGEAYDK 337          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A7S2UND7_9STRA (N(6)-L-threonylcarbamoyladenine synthase (Fragment) n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UND7_9STRA)

HSP 1 Score: 178 bits (451), Expect = 1.590e-49
Identity = 102/177 (57.63%), Postives = 127/177 (71.75%), Query Frame = 1
Query:   49 ARETRVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGSGAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAF 579
            A+E R   +G AK+V R  ++         + P G  G+   A SGLPD +KPF VLGIE+SCDDT AAVVRSDG +LGE++A Q ++HE WGGVVP LA+ +H  K+D V+ RAL +AGL+S A+VDA+ VTVGPGLEICLRVG   AKALA ++ KPFV VHHLEAH L+AR  F
Sbjct:  107 AKEKRRQFIGMAKAVDRGQTANR-------YNPGGNDGASFVAKSGLPDRTKPFLVLGIESSCDDTGAAVVRSDGVILGESLASQHEIHEAWGGVVPNLAKAAHEEKIDEVIARALEEAGLSSPADVDAIGVTVGPGLEICLRVGCNTAKALAQKYEKPFVGVHHLEAHILMARLPF 276          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: A0A1Z5K725_FISSO (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5K725_FISSO)

HSP 1 Score: 181 bits (460), Expect = 5.200e-49
Identity = 124/335 (37.01%), Postives = 148/335 (44.18%), Query Frame = 1
Query:  175 ALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASSAAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAXSGAPSSESFAAAFTAAVTDVSIPSAAGPXXXSDPVPSSTSSAGGVSAAXXXXXXXXXXXXXXXXXXXXXXDVXXXXXXXXXXXSSHFAPTLAAAAAADAGSGDEGTPPLEFPFLALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK 1179
            ALSGLP   + FTVLGIE+SCDDT AAVVRSDG +LGEA+A Q+ +H  WGGVVPGLA+++H  ++D +V+ AL  AG+ SAA+VDA+ VTVGPGLEICLRVG  KA+ALA ++ KPFV VHHLEAH L+AR  +                                                                                                                                                       D  +  LEFPFLALLVSGGHCQLL C G+G   VLGGT DD+LGEAYDK
Sbjct:  101 ALSGLPPNLQNFTVLGIESSCDDTGAAVVRSDGTILGEALASQSHIHAPWGGVVPGLAKEAHEAEIDRIVQEALEAAGMTSAADVDAIGVTVGPGLEICLRVGATKARALAIEYQKPFVGVHHLEAHILMARLPY-------------------------------------------------------------------------------------------------------------------------------------------------------DSASKQLEFPFLALLVSGGHCQLLKCTGIGDMAVLGGTFDDSLGEAYDK 284          
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Match: R1CZN8_EMIHU (Probable tRNA N6-adenosine threonylcarbamoyltransferase, mitochondrial n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CZN8_EMIHU)

HSP 1 Score: 180 bits (456), Expect = 1.480e-48
Identity = 97/132 (73.48%), Postives = 108/132 (81.82%), Query Frame = 1
Query:  196 LSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVHEEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLEICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAP 591
            L +PFTVLGIETSCDDT  AVVRSDG +LGEAIA QA++HE WGGVVPG+ARD+H   + G VE AL +AGL+SAAEVDAVAVTVGPGLEICLRVG E+A  LA  HGK FVAVHHLEAH L+AR A  P P
Sbjct:   60 LREPFTVLGIETSCDDTGVAVVRSDGEILGEAIASQAELHEAWGGVVPGIARDAHRDALGGAVELALRRAGLSSAAEVDAVAVTVGPGLEICLRVGCEEAVRLATAHGKAFVAVHHLEAHVLMARLACHPPP 191          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1227.1878.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIT8_ECTSI1.060e-12566.18Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A835YKI5_9STRA8.720e-5941.85Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2YT17_9STRA3.370e-5538.87Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S4J610_9STRA9.300e-5537.40Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2V5H1_9STRA2.300e-5438.73Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2RZ45_9STRA3.150e-5437.21Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
W7TQK2_9STRA1.340e-5142.31Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
A0A7S2UND7_9STRA1.590e-4957.63N(6)-L-threonylcarbamoyladenine synthase (Fragment... [more]
A0A1Z5K725_FISSO5.200e-4937.01Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]
R1CZN8_EMIHU1.480e-4873.48Probable tRNA N6-adenosine threonylcarbamoyltransf... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1227contigL-elsbetiae_contig1227:23811..27580 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score395.6
Seed ortholog evalue2.7e-107
Seed eggNOG ortholog2880.D8LIT8
Preferred nameOSGEPL1
KEGG rclassRC00070,RC00416,RC00773
KEGG koko:K01409,ko:K10721
KEGG ReactionR08134,R08138,R10648
KEGG Pathwayko00981,map00981
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000408,GO:0000959,GO:0000963,GO:0002949,GO:0003006,GO:0003674,GO:0003824,GO:0004175,GO:0004252,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006508,GO:0006725,GO:0006807,GO:0007275,GO:0008033,GO:0008150,GO:0008152,GO:0008233,GO:0008236,GO:0008270,GO:0009451,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0010467,GO:0016020,GO:0016070,GO:0016787,GO:0017171,GO:0019538,GO:0019866,GO:0022414,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032501,GO:0032502,GO:0032991,GO:0034470,GO:0034641,GO:0034660,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0070011,GO:0070525,GO:0070900,GO:0071704,GO:0072670,GO:0090304,GO:0090646,GO:0140053,GO:0140096,GO:1900864,GO:1901360,GO:1901564
EggNOG free text desc.mitochondrial tRNA threonylcarbamoyladenosine modification
EggNOG OGsCOG0533@1,KOG2707@2759
Ec32 ortholog descriptionKae1/YgjD family
Ec32 orthologEc-20_001490.1
EC2.3.1.234
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00199,ko01000,ko03016
Exons5
Model size1180
Cds size1164
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1227.1878.1prot_L-elsbetiae_contig1227.1878.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1227 23826..27580 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.2264173-UTR-L-elsbetiae_contig1227:23810..238251622815425.2264173-UTR-L-elsbetiae_contig1227:23810..23825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1227 23811..23825 +
1691682891.60107-UTR-L-elsbetiae_contig1227:23810..238251691682891.60107-UTR-L-elsbetiae_contig1227:23810..23825Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1227 23811..23825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815425.2384584-CDS-L-elsbetiae_contig1227:23825..238901622815425.2384584-CDS-L-elsbetiae_contig1227:23825..23890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 23826..23890 +
1691682891.612431-CDS-L-elsbetiae_contig1227:23825..238901691682891.612431-CDS-L-elsbetiae_contig1227:23825..23890Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 23826..23890 +
1622815425.252844-CDS-L-elsbetiae_contig1227:24565..247731622815425.252844-CDS-L-elsbetiae_contig1227:24565..24773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 24566..24773 +
1691682891.6223576-CDS-L-elsbetiae_contig1227:24565..247731691682891.6223576-CDS-L-elsbetiae_contig1227:24565..24773Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 24566..24773 +
1622815425.2634046-CDS-L-elsbetiae_contig1227:25077..252361622815425.2634046-CDS-L-elsbetiae_contig1227:25077..25236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 25078..25236 +
1691682891.6431196-CDS-L-elsbetiae_contig1227:25077..252361691682891.6431196-CDS-L-elsbetiae_contig1227:25077..25236Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 25078..25236 +
1622815425.2729192-CDS-L-elsbetiae_contig1227:26093..261671622815425.2729192-CDS-L-elsbetiae_contig1227:26093..26167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 26094..26167 +
1691682891.6566389-CDS-L-elsbetiae_contig1227:26093..261671691682891.6566389-CDS-L-elsbetiae_contig1227:26093..26167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 26094..26167 +
1622815425.3181279-CDS-L-elsbetiae_contig1227:26922..275801622815425.3181279-CDS-L-elsbetiae_contig1227:26922..27580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 26923..27580 +
1691682891.6667197-CDS-L-elsbetiae_contig1227:26922..275801691682891.6667197-CDS-L-elsbetiae_contig1227:26922..27580Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1227 26923..27580 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1227.1878.1

>prot_L-elsbetiae_contig1227.1878.1 ID=prot_L-elsbetiae_contig1227.1878.1|Name=mRNA_L-elsbetiae_contig1227.1878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=388bp
MRAERKQRRKLARETRVLNVGRAKSVRRAGSSTETVGLEALHPPQGPPGS
GAPALSGLPDLSKPFTVLGIETSCDDTAAAVVRSDGAVLGEAIAGQADVH
EEWGGVVPGLARDSHALKMDGVVERALGQAGLASAAEVDAVAVTVGPGLE
ICLRVGTEKAKALAAQHGKPFVAVHHLEAHALLARKAFPPAPAADASASS
AAVYSSGASGVGVGSAPRSGPGETFAAGDVSAAAAAASGAPSSESFAAAF
TAAVTDVSIPSAAGPAAPSDPVPSSTSSAGGVSAAATAASSAPSSEAFAA
AFTAAVADVSAPVASARAAASSHFAPTLAAAAAADAGSGDEGTPPLEFPF
LALLVSGGHCQLLLCEGVGLYTVLGGTVDDALGEAYDK
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mRNA from alignment at L-elsbetiae_contig1227:23811..27580+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1227.1878.1 ID=mRNA_L-elsbetiae_contig1227.1878.1|Name=mRNA_L-elsbetiae_contig1227.1878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3770bp|location=Sequence derived from alignment at L-elsbetiae_contig1227:23811..27580+ (Laminarionema elsbetiae ELsaHSoW15)
GACGATCGGTATTTAATGCGGGCGGAGAGGAAGCAAAGGAGAAAGCTGGC CCGGGAGACTAGGGTGCTCAACGTCGGCAGGTATGGTATGTGGCGTAAGC TACCACACCTACTTAAGACAAGACACACCCGAAAAACTCTCCACAATACC ACACCGTGTGATACATATTTTTACTCGAAATATTCGACCGAAAACAAAAG TACGCTTTTAAGATCAAGTTATAGGGTTCACACACAGAATCACCCTGTCC TCACAAGTACAACGTGTGATAACAAAAAGTGCTTTTGACTCAAAAAAAAA GTTACCACACAGCTGTGATATATCACGTCATATACGGGGTACACATGTGC ACATGCACGCATGTAGTGGTGTTTTTTCTCAACAGCCTCCTTCCCCTCTC TGGTGGAGCTTGCATCTAATGGCAGCGTCGGTTCCAGGAGCGTGTCGAGT GGTTCCCGGCAGTTGTCCGGCGGTATCGGGCGATGTAGATGTAGAGCGTC CATGGTAGTACCTATACGCCCGAAGTGCCTCCGCGCTGATCAAGAGCGAG CCGGCGCCGGGCAGGCGTAAAGATACCACGGGGGCTGGTGGCAATTCTCA GAAAGGAGGCTTCTCTCGAACGCCTGTCGCCCCCCAAAAGTTGATTTCAA CACAGCCTGTCTGCCCCGCACGGCACCATCTCACCCCCGGGCTTTGTTAT CGTTGCCCTTTGTTTTCGCCCTCGCGCCGGCGGCGTCCGTCCGTCCGCCG ACAAGGGCCAAGAGCGTCCGGCGGGCGGGGTCTTCCACGGAGACGGTGGG ACTGGAGGCTCTCCACCCCCCCCAGGGGCCGCCGGGGTCGGGAGCCCCTG CCCTGTCCGGCCTTCCCGACTTGTCGAAACCCTTCACGGTGCTCGGCATT GAGACGAGCTGCGACGACACGGCCGCGGCCGTGGTGCGCTCGGACGGCGC CGTACTCGGCGAGGTGACACTAAATATGTAAATAAACGTCATTGCTGTTG TGACTAGAAAGAGAGAGAGAGAGAGAGAGAGAAAGAGCGGCGTGGGAAGA TGTTTTTGTCCGTGCGGAGCCCCCGAGGAGAGAAGGTGCAATCGAAACCG GTGGGAGACGGGACGGGAATCACCAAGCATCTACCGTTTCTACCGTTCTA CCCCGCGGCAGCTTCGGGGACGGCTTTCTGAGCCACCAGCCGGGCCCCTA TGGTTCTACGCAAACACGCGACATGCGAAACCCCTCGGCCTGTTCCTGAT TTGTTTGGTCTCCTCAGGCCATCGCCGGGCAGGCGGATGTCCACGAGGAG TGGGGGGGCGTAGTCCCCGGGCTGGCCAGGGATTCCCATGCTCTCAAGAT GGACGGGGTGGTGGAGAGGGCGCTGGGGCAGGCCGGTCTGGCTTCTGCGG CCGAGGTTGACGCCGTCGCCGTCACGGTGAGCGTAGGCTGTCATGTGTTG CCATAGATGATGACGGAGGATATAACACCCGTGTAAAGACCACGCCCGAA CATATTCTCCGCGATATCACACTACCGTGTGACGGATTTTTTTGTGGATT CGAAATATGTATGTAGTGACCCAAGATAAAAATACACTGAGATCAAGTAC ATATGGTGACACCAGACGCCACGTCCCGTCCACAATAGCACACCGCCGTG TGACACAGTTTTTTTTTAACTTCAAGGTGTTTTATATCACAACGGTGTGT TATTTCCTGTCGTATACAATACCGAATTGGCGTGCTTTGTGTTTGCTGGC GGTGGCATGGGTGACCATTGTGTATTTATGCATGACATGAGTGGCAAATG GGTATGCTGGCAGTGCGGTTGAGCTGTGTTTTTTTGTTTAGTCGGAGCGG CCCTAGCAGGCGAAAACCGTGATGAACTTGACGCTTCCTGCCGCTCCGAA AATACACCAATTCCTTGGGCGTCTCATCGGCCAAGTGTAACAGCCTCGCG GTTTTGCTTGCCTTTGTTGGCCGGTGTCACGTCAACCGAAACGATGACGT GACTTGCTGCATGTGTATGCATCCACCGCGCATCGTGCGCACGATTAACG TGAGTCCACGTTGGAATTTGGCCCCCGACAAGCAGGCGATGGCAAGACTT ACATCACTCGGATTCGGCGCGGGTGAAAAAAAAACTTGGCTTACCGGCGT TCTGAATCGCTAGGTACTAACCAGTAGATCGGCTGAGGCTGGACTTGAAT TAAATCTCAAGGTGATGACTGCGTGGGGTTTGGTTGTTTGTTATTGTGTC CGCGTTCTGAATCGTTTCGTTTCTGGTGAGCAGGTGGGGCCTGGGCTGGA GATCTGTCTTCGCGTGGGCACAGAGAAGGCTAAGGCTCTCGCCGCCCAGC ACGGAAAGTGAGTCAATTTCCCCTCGGCCTTGCAGCAGAGCCGAAAGAGG CGTCGAGCATTATCTTCGTAAATCCCTCACTTTTCGGTGGTGGCGTGTCT TTAGCCCTCCCGCCGTCTGTCTCTCAGGCTGCATCTGCCGCCCCGTTTGC CTGTTGTTGTGTTTTTGGCTTGCTTGCTGTTTGAGCATGCACACGTGACC TTTTTCCTTGGACGGTACAGGGGGGGGGGGGGGGGGGGCGCCCCAAGAAG GGTGGTATTTGTTTTGGGTGTGGGGCGCTGTTTTTTGTTTTTTGTTTGGT TTTGTGTTTTGCGGCGCTCCTCTCTTTTGTTTTGGGGGGGGGGGGGGGGG GGGGGGGGGGGGGGGGCACACGCTACAAGGATGTCATTAGATTTGTGTGT TGCGCTCGATTTTTTGCTTTTCTGTCTCTTGTCACCCCTGTCCGCTCCTG TTTGTTCTGCATCTAAATACCGTCATATAGAAGTATTATTTTCTGGATAG ACACCGACCGCGGGCATGTTGTGTAGTGCCGCGAGCCGCTCTCTGGCTAC TCGTGCGTATATCGCGCGAAGTTCTAGGCACAACCGTATTTCGCGTTACC TCTTTGTTCTCCTCCTGCCCCCCCCCCCCCTAGCTCGACGCCTGCTTGCT GGTTTCGTCGTCGGCCATCGCCTTGTGTTTCGTTCGCTAAATCCTGTGTT TGTCAACATCTGTGCTCTTTATCTTATTATCGACTGTGCCCCCTTTTGTT GTTGTTTCGCAGGCCGTTCGTGGCGGTACACCACCTGGAGGCACACGCTC TCCTCGCAAGAAAAGCTTTCCCCCCAGCCCCCGCTGCCGATGCCTCTGCG TCTTCGGCCGCTGTTTATTCCTCTGGTGCCTCTGGTGTCGGCGTCGGCTC TGCTCCTCGTTCGGGCCCAGGCGAAACCTTTGCTGCCGGCGATGTTTCCG CCGCCGCTGCTGCCGCCTCGGGCGCTCCGTCTTCGGAGTCCTTTGCGGCC GCATTTACTGCTGCTGTCACCGACGTTTCCATTCCAAGCGCAGCCGGCCC CGCAGCTCCTTCCGACCCCGTTCCTAGCAGCACCTCCTCTGCTGGCGGTG TCTCCGCCGCCGCCACGGCTGCCTCCTCGGCTCCGTCTTCGGAGGCTTTC GCGGCCGCGTTTACGGCTGCCGTCGCCGACGTTTCGGCGCCGGTTGCTTC TGCTCGTGCCGCGGCTAGCTCTCATTTTGCTCCAACTCTTGCCGCTGCCG CCGCCGCCGATGCCGGCAGCGGTGACGAAGGAACGCCCCCGCTCGAGTTC CCGTTCCTGGCGCTGCTGGTTTCCGGGGGGCACTGTCAGCTGCTGCTGTG CGAGGGCGTGGGCCTGTACACCGTCCTCGGCGGCACCGTGGACGACGCTC TCGGGGAAGCTTACGACAAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1227:23811..27580+

>mRNA_L-elsbetiae_contig1227.1878.1 ID=mRNA_L-elsbetiae_contig1227.1878.1|Name=mRNA_L-elsbetiae_contig1227.1878.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2328bp|location=Sequence derived from alignment at L-elsbetiae_contig1227:23811..27580+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCGGGCGGAGAGGAAGCAAAGGAGAAAGCTGGCCCGGGAGACTAGGGT
GCTCAACGTCGGCAGATGCGGGCGGAGAGGAAGCAAAGGAGAAAGCTGGC
CCGGGAGACTAGGGTGCTCAACGTCGGCAGGGCCAAGAGCGTCCGGCGGG
CGGGGTCTTCCACGGAGACGGTGGGACTGGAGGCTCTCCACCCCCCCCAG
GGGCCGCCGGGGTCGGGAGCCCCTGCCCTGTCCGGCCTTCCCGACTTGTC
GAAACCCTTCACGGTGCTCGGCATTGAGACGAGCTGCGACGACACGGCCG
CGGCCGTGGTGCGCTCGGACGGCGCCGTACTCGGCGAGGGCCAAGAGCGT
CCGGCGGGCGGGGTCTTCCACGGAGACGGTGGGACTGGAGGCTCTCCACC
CCCCCCAGGGGCCGCCGGGGTCGGGAGCCCCTGCCCTGTCCGGCCTTCCC
GACTTGTCGAAACCCTTCACGGTGCTCGGCATTGAGACGAGCTGCGACGA
CACGGCCGCGGCCGTGGTGCGCTCGGACGGCGCCGTACTCGGCGAGGCCA
TCGCCGGGCAGGCGGATGTCCACGAGGAGTGGGGGGGCGTAGTCCCCGGG
CTGGCCAGGGATTCCCATGCTCTCAAGATGGACGGGGTGGTGGAGAGGGC
GCTGGGGCAGGCCGGTCTGGCTTCTGCGGCCGAGGTTGACGCCGTCGCCG
TCACGGCCATCGCCGGGCAGGCGGATGTCCACGAGGAGTGGGGGGGCGTA
GTCCCCGGGCTGGCCAGGGATTCCCATGCTCTCAAGATGGACGGGGTGGT
GGAGAGGGCGCTGGGGCAGGCCGGTCTGGCTTCTGCGGCCGAGGTTGACG
CCGTCGCCGTCACGGTGGGGCCTGGGCTGGAGATCTGTCTTCGCGTGGGC
ACAGAGAAGGCTAAGGCTCTCGCCGCCCAGCACGGAAAGTGGGGCCTGGG
CTGGAGATCTGTCTTCGCGTGGGCACAGAGAAGGCTAAGGCTCTCGCCGC
CCAGCACGGAAAGCCGTTCGTGGCGGTACACCACCTGGAGGCACACGCTC
TCCTCGCAAGAAAAGCTTTCCCCCCAGCCCCCGCTGCCGATGCCTCTGCG
TCTTCGGCCGCTGTTTATTCCTCTGGTGCCTCTGGTGTCGGCGTCGGCTC
TGCTCCTCGTTCGGGCCCAGGCGAAACCTTTGCTGCCGGCGATGTTTCCG
CCGCCGCTGCTGCCGCCTCGGGCGCTCCGTCTTCGGAGTCCTTTGCGGCC
GCATTTACTGCTGCTGTCACCGACGTTTCCATTCCAAGCGCAGCCGGCCC
CGCAGCTCCTTCCGACCCCGTTCCTAGCAGCACCTCCTCTGCTGGCGGTG
TCTCCGCCGCCGCCACGGCTGCCTCCTCGGCTCCGTCTTCGGAGGCTTTC
GCGGCCGCGTTTACGGCTGCCGTCGCCGACGTTTCGGCGCCGGTTGCTTC
TGCTCGTGCCGCGGCTAGCTCTCATTTTGCTCCAACTCTTGCCGCTGCCG
CCGCCGCCGATGCCGGCAGCGGTGACGAAGGAACGCCCCCGCTCGAGTTC
CCGTTCCTGGCGCTGCTGGTTTCCGGGGGGCACTGTCAGCTGCTGCTGTG
CGAGGGCGTGGGCCTGTACACCGTCCTCGGCGGCACCGTGGACGACGCTC
TCGGGGAAGCTTACGACAAGGCCGTTCGTGGCGGTACACCACCTGGAGGC
ACACGCTCTCCTCGCAAGAAAAGCTTTCCCCCCAGCCCCCGCTGCCGATG
CCTCTGCGTCTTCGGCCGCTGTTTATTCCTCTGGTGCCTCTGGTGTCGGC
GTCGGCTCTGCTCCTCGTTCGGGCCCAGGCGAAACCTTTGCTGCCGGCGA
TGTTTCCGCCGCCGCTGCTGCCGCCTCGGGCGCTCCGTCTTCGGAGTCCT
TTGCGGCCGCATTTACTGCTGCTGTCACCGACGTTTCCATTCCAAGCGCA
GCCGGCCCCGCAGCTCCTTCCGACCCCGTTCCTAGCAGCACCTCCTCTGC
TGGCGGTGTCTCCGCCGCCGCCACGGCTGCCTCCTCGGCTCCGTCTTCGG
AGGCTTTCGCGGCCGCGTTTACGGCTGCCGTCGCCGACGTTTCGGCGCCG
GTTGCTTCTGCTCGTGCCGCGGCTAGCTCTCATTTTGCTCCAACTCTTGC
CGCTGCCGCCGCCGCCGATGCCGGCAGCGGTGACGAAGGAACGCCCCCGC
TCGAGTTCCCGTTCCTGGCGCTGCTGGTTTCCGGGGGGCACTGTCAGCTG
CTGCTGTGCGAGGGCGTGGGCCTGTACACCGTCCTCGGCGGCACCGTGGA
CGACGCTCTCGGGGAAGCTTACGACAAG
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