|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | expressed unknown protein |
| Ec32 ortholog | Ec-21_003580.1 |
| Exons | 2 |
| Model size | 1261 |
| Cds size | 1008 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815425.0796728-UTR-L-elsbetiae_contig12269:2129..2382 | 1622815425.0796728-UTR-L-elsbetiae_contig12269:2129..2382 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12269 2130..2382 + |
| 1691682891.5663857-UTR-L-elsbetiae_contig12269:2129..2382 | 1691682891.5663857-UTR-L-elsbetiae_contig12269:2129..2382 | Laminarionema elsbetiae ELsaHSoW15 | UTR | L-elsbetiae_contig12269 2130..2382 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815425.093773-CDS-L-elsbetiae_contig12269:2382..2628 | 1622815425.093773-CDS-L-elsbetiae_contig12269:2382..2628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12269 2383..2628 + |
| 1691682891.5778298-CDS-L-elsbetiae_contig12269:2382..2628 | 1691682891.5778298-CDS-L-elsbetiae_contig12269:2382..2628 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12269 2383..2628 + |
| 1622815425.1909778-CDS-L-elsbetiae_contig12269:3627..4389 | 1622815425.1909778-CDS-L-elsbetiae_contig12269:3627..4389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12269 3628..4389 + |
| 1691682891.5877926-CDS-L-elsbetiae_contig12269:3627..4389 | 1691682891.5877926-CDS-L-elsbetiae_contig12269:3627..4389 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig12269 3628..4389 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12269.1877.1 >prot_L-elsbetiae_contig12269.1877.1 ID=prot_L-elsbetiae_contig12269.1877.1|Name=mRNA_L-elsbetiae_contig12269.1877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=336bp
MAMPPKPVGAVSAECQSPGPSDGGGSPPALFGALSSDSRSSFDSSRTLRQ
GQEAVALAPSADEAEGPSASPASTAEWPWPPKSTRDNGLGEPERAAAGSA
LGLPKACSDRGSPSAAAAITTTQTTLPAAAAVVPNAANIANHNYSSSSSG
GGGGGGGASSSGSSSSFSSRVEQASRLAAAAAHEVLVPPTPPSLRCWTPR
GAAGGGGRADGANDRGFRRGRSRSRASSGGPATPPAPEPSSNGGSEWGGK
SRRSGGAGGGGGGGPDRSGERRARPSLEDLPPVDSVEAPTSARVMVGSYS
IGEGGEWWVPGGGGGGIGEAPPPQAPSPSPPTPDSG back to topmRNA from alignment at L-elsbetiae_contig12269:2130..4389+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig12269.1877.1 ID=mRNA_L-elsbetiae_contig12269.1877.1|Name=mRNA_L-elsbetiae_contig12269.1877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2260bp|location=Sequence derived from alignment at L-elsbetiae_contig12269:2130..4389+ (Laminarionema elsbetiae ELsaHSoW15)
AGAGGGCACTCGGGGGGGGGGGGGGCACAGTTCTTCGGCCGGAAGAAACA
AAGGAAGGCAGGAAAACTCGGTTTCATCAGCGACCGGGGAGTCTCTCAGC
CCGATCGATTCAAACAAGTGGCGGGATACTTTCCAAGAAGGAGAGAGAGA
GGAATTATTAAGCGGAAGAGAGCGAGAGAGAGAGAGAGAGACGAGATATA
GACGGAGATAGATTAAACCCTGCTCGACCGCTTCTGTTTGCGGCGGAAAC
GCGATGGCAATGCCGCCGAAGCCCGTGGGAGCGGTGTCGGCGGAGTGCCA
GTCGCCGGGCCCCTCGGACGGGGGGGGCTCGCCGCCGGCGCTGTTTGGGG
CGCTGTCTTCCGATTCGCGGTCGAGCTTCGACTCGAGCAGGACTCTGCGG
CAGGGCCAGGAGGCCGTGGCTCTCGCTCCTTCGGCGGATGAGGCGGAGGG
ACCGTCAGCATCACCAGCGTCGACGGCGGAGTGGCCGTGGCCGCCAAAGG
TGGGCTATTTAAAAGGCTTGCCACGAGGAGACCCTAGGAAGAGGGGGTGG
TAGATAGCGGTTCTGGATTCGGTCGATCGAGCGCTTAACACTGCTCCTGC
TGCTGCTGCTGCTGCTGCTTTCGGTCGGTCCTCGTCGGTTTTTTTTGGCA
TGTAGACTGCTGTTGTCGCGTTTGGGGGGTGCTCATCCGCTAGACCATTC
GTTCAAGTCTTGTCTTCTTGGCTGTCACTCCACTTGACTATAATACTTTC
ATCTGGATGCGTGTGTGGTGGTGGCAAGTGGCTTGTGTCAATCGGCAGGG
AGGCGCGCCCCGGTGTACCCCTAGAGGTTGGAAATGTCTTTTTTTTGCGG
TGGGGGAACAAGCACTGCTACGCCTTGTTGTAGTTACACATGAAGGACCT
TTTTGTTTTTTAGCTGGCTGCTGGCGAGGCGCTGCCGCCGCCGCCGCCGC
CGCCGCTCTATCCGATGTATGTATTGGCGCCTTTCGTGCCCCGGTGGTCA
GCCAGCCTTGTGCGTGAGACGCCGCACAGCAAGCAGCAGTGGGGGCGCGC
CGACAGCAAGCAGTGTCCTACGCTGGGTGTGCCGGCAGTCAGTCTCGCTT
GTGGTACGAATCTCGATCCTCGAGGGATGTTTATTTTATTGCGTCAGTGG
CCAGTTGCAACTCCTTTTGGTGGGCTGGAGGTTGTCCTTATTTGTTCAGC
AAGGACCGTCTGAAGTTGCCATCTTCTTCGCCGCTTCCGTCACCGGGGGC
GGTGGCGTTCGGCCAAGTTTTGCGAAGCTCCCCAAGATTTTAGTGCCTTT
TCGGAGGTTCGGCGGCGGCGGTGTAAAGGAGCTTCTCCTTCTCCGAACGC
TGCTGCTTCGTCGATTTTCAAGTGTTTCGATGCTGCTTTGATCGACATTG
TTTTGACGTCCGCTGCTCCTCTCCGCCCTCTCCTTCTTTCTCTCTCTCTC
CTTCTCTCCTACTTGGTGGATGGTGGATGTCCCGGGACAACAAAACAGTC
TACAAGAGATAATGGCCTGGGTGAGCCAGAGCGCGCAGCGGCGGGTAGCG
CCCTCGGTCTTCCGAAGGCATGTAGCGATAGAGGATCACCATCAGCAGCA
GCAGCGATAACAACGACACAAACGACGTTACCAGCAGCAGCAGCAGTAGT
ACCAAACGCAGCGAACATCGCCAACCACAACTACAGCAGCAGCAGCAGCG
GCGGCGGCGGCGGCGGCGGCGGCGCCAGCAGCAGCGGCAGCAGCAGCAGC
TTCAGCAGCCGGGTAGAGCAGGCTAGCAGGCTGGCGGCGGCCGCCGCACA
CGAAGTGCTCGTCCCGCCGACGCCGCCGTCGCTGCGATGTTGGACCCCCA
GGGGAGCGGCGGGGGGCGGCGGTAGGGCGGACGGTGCCAACGACCGCGGG
TTCCGAAGAGGGCGGAGCCGATCACGAGCTTCGTCGGGCGGCCCGGCGAC
GCCGCCAGCACCAGAGCCGTCGTCCAATGGCGGTAGTGAGTGGGGGGGCA
AGAGCCGCCGATCAGGCGGGGCCGGTGGCGGCGGCGGCGGCGGTCCAGAC
CGCAGCGGGGAAAGAAGAGCACGGCCGTCGCTGGAAGACTTGCCGCCGGT
GGATTCTGTGGAGGCGCCCACGTCGGCCCGCGTGATGGTTGGATCCTACT
CCATCGGCGAGGGGGGCGAGTGGTGGGTACCGGGCGGCGGCGGCGGCGGC
ATCGGGGAGGCGCCGCCGCCGCAAGCACCGTCTCCGTCGCCGCCAACCCC
AGATAGCGGC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig12269:2130..4389+ >mRNA_L-elsbetiae_contig12269.1877.1 ID=mRNA_L-elsbetiae_contig12269.1877.1|Name=mRNA_L-elsbetiae_contig12269.1877.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2016bp|location=Sequence derived from alignment at L-elsbetiae_contig12269:2130..4389+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCAATGCCGCCGAAGCCCGTGGGAGCGGTGTCGGCGGAGTGCCAGTC
GCCGGGCCCCTCGGACGGGGGGGGCTCGCCGCCGGCGCTGTTTGGGGCGC
TGTCTTCCGATTCGCGGTCGAGCTTCGACTCGAGCAGGACTCTGCGGCAG
GGCCAGGAGGCCGTGGCTCTCGCTCCTTCGGCGGATGAGGCGGAGGGACC
GTCAGCATCACCAGCGTCGACGGCGGAGTGGCCGTGGCCGCCAAAGATGG
CAATGCCGCCGAAGCCCGTGGGAGCGGTGTCGGCGGAGTGCCAGTCGCCG
GGCCCCTCGGACGGGGGGGGCTCGCCGCCGGCGCTGTTTGGGGCGCTGTC
TTCCGATTCGCGGTCGAGCTTCGACTCGAGCAGGACTCTGCGGCAGGGCC
AGGAGGCCGTGGCTCTCGCTCCTTCGGCGGATGAGGCGGAGGGACCGTCA
GCATCACCAGCGTCGACGGCGGAGTGGCCGTGGCCGCCAAAGTCTACAAG
AGATAATGGCCTGGGTGAGCCAGAGCGCGCAGCGGCGGGTAGCGCCCTCG
GTCTTCCGAAGGCATGTAGCGATAGAGGATCACCATCAGCAGCAGCAGCG
ATAACAACGACACAAACGACGTTACCAGCAGCAGCAGCAGTAGTACCAAA
CGCAGCGAACATCGCCAACCACAACTACAGCAGCAGCAGCAGCGGCGGCG
GCGGCGGCGGCGGCGGCGCCAGCAGCAGCGGCAGCAGCAGCAGCTTCAGC
AGCCGGGTAGAGCAGGCTAGCAGGCTGGCGGCGGCCGCCGCACACGAAGT
GCTCGTCCCGCCGACGCCGCCGTCGCTGCGATGTTGGACCCCCAGGGGAG
CGGCGGGGGGCGGCGGTAGGGCGGACGGTGCCAACGACCGCGGGTTCCGA
AGAGGGCGGAGCCGATCACGAGCTTCGTCGGGCGGCCCGGCGACGCCGCC
AGCACCAGAGCCGTCGTCCAATGGCGGTAGTGAGTGGGGGGGCAAGAGCC
GCCGATCAGGCGGGGCCGGTGGCGGCGGCGGCGGCGGTCCAGACCGCAGC
GGGGAAAGAAGAGCACGGCCGTCGCTGGAAGACTTGCCGCCGGTGGATTC
TGTGGAGGCGCCCACGTCGGCCCGCGTGATGGTTGGATCCTACTCCATCG
GCGAGGGGGGCGAGTGGTGGGTACCGGGCGGCGGCGGCGGCGGCATCGGG
GAGGCGCCGCCGCCGCAAGCACCGTCTCCGTCGCCGCCAACCCCAGATAG
CGGCTCTACAAGAGATAATGGCCTGGGTGAGCCAGAGCGCGCAGCGGCGG
GTAGCGCCCTCGGTCTTCCGAAGGCATGTAGCGATAGAGGATCACCATCA
GCAGCAGCAGCGATAACAACGACACAAACGACGTTACCAGCAGCAGCAGC
AGTAGTACCAAACGCAGCGAACATCGCCAACCACAACTACAGCAGCAGCA
GCAGCGGCGGCGGCGGCGGCGGCGGCGGCGCCAGCAGCAGCGGCAGCAGC
AGCAGCTTCAGCAGCCGGGTAGAGCAGGCTAGCAGGCTGGCGGCGGCCGC
CGCACACGAAGTGCTCGTCCCGCCGACGCCGCCGTCGCTGCGATGTTGGA
CCCCCAGGGGAGCGGCGGGGGGCGGCGGTAGGGCGGACGGTGCCAACGAC
CGCGGGTTCCGAAGAGGGCGGAGCCGATCACGAGCTTCGTCGGGCGGCCC
GGCGACGCCGCCAGCACCAGAGCCGTCGTCCAATGGCGGTAGTGAGTGGG
GGGGCAAGAGCCGCCGATCAGGCGGGGCCGGTGGCGGCGGCGGCGGCGGT
CCAGACCGCAGCGGGGAAAGAAGAGCACGGCCGTCGCTGGAAGACTTGCC
GCCGGTGGATTCTGTGGAGGCGCCCACGTCGGCCCGCGTGATGGTTGGAT
CCTACTCCATCGGCGAGGGGGGCGAGTGGTGGGTACCGGGCGGCGGCGGC
GGCGGCATCGGGGAGGCGCCGCCGCCGCAAGCACCGTCTCCGTCGCCGCC
AACCCCAGATAGCGGC back to top
|