mRNA_L-elsbetiae_contig12268.1876.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12268.1876.1
Unique NamemRNA_L-elsbetiae_contig12268.1876.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D8LU06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU06_ECTSI)

HSP 1 Score: 158 bits (400), Expect = 5.390e-44
Identity = 91/219 (41.55%), Postives = 126/219 (57.53%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVYGFHRAIEQDAYIAKTGLGATGLE--------RNADVSSQAIHSQPPS--SDPTQAEFTKVKRIEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVFPSP 691
            Q+ +AATE +++++V   +RA EQ  +   +   AT  E        R +D   ++ H   P   SD        V+ + FE LE AVDRPS+RGG GGL+IN  L+  K  +G+ H ALER+GRCVE+ E+YPGL R  +  HLAH+ L   AA+G   A+ ++D+LR +YN   P GS  VPPL EW  V   CD + CRAM+    SGK+    +P
Sbjct:   14 QLKEAATEVDLYQYVAQSYRAYEQILHQLPSKQIATTCENPCDAESDRGSDSGRRSDHVFLPREVSDAIGTYLESVRCLSFEPLEEAVDRPSVRGGFGGLLINLGLIFTKAAQGDLHAALERIGRCVEVCERYPGLCRSTVGCHLAHIALVSLAAVGGSRAQTMYDRLRGSYNSCRPAGSRPVPPLEEWDRVDAFCDDSFCRAMDL--ASGKLKALSAP 230          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D8LU08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LU08_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 3.580e-42
Identity = 93/237 (39.24%), Postives = 132/237 (55.70%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVYGFHRAIEQDAYIAKTGLGATGLER--------NADVSSQAIHSQPPSSDPTQAEFTKVKR--IEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVFP------SPLPSEAAVSSRAE 727
            Q+ +AATE E++++V    RA EQ  ++  +   AT  +          +D   Q+ H   P                ++FE LE AVDRPS+RGGIG L +NS LV +K  KG+ H AL+R+GRCV+I+E+YPGL R  +  HLAH++L   AA+G P A+ ++D+LR +YN   P GS  VPPL EW GV   CD   CRA++      K    P      +P+ +E A + RA+
Sbjct:  268 QLKEAATEVELYQYVAQSFRAFEQTVHVTASINSATAGDHLCQAASDGRSDTLLQSDHVLLPGEVANAMGTVSASGNFLDFEPLEEAVDRPSVRGGIGSLQVNSTLVFKKAAKGDVHGALKRVGRCVQIFERYPGLCRSMIGCHLAHMMLVSLAAIGDPRAQAMYDRLRESYNSCRPSGSRLVPPLEEWHGVVAFCDDVYCRAIDLFAHKLKAFSAPPVNSIDAPVETEGADADRAK 504          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: A0A6H5KED9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KED9_9PHAE)

HSP 1 Score: 152 bits (385), Expect = 6.110e-42
Identity = 86/202 (42.57%), Postives = 118/202 (58.42%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVYGFHRAIEQDAY------IAKTG--LGATGLERNADVSSQAIHSQPPSSDPTQAEFTKVKR--IEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACR 640
            Q+ +AATE E+++FV    RA EQ  +       AK G  L     +  +D   ++ H   P                ++FE LE AVDRPS+RGGIG L +NS LV +K  KG+ H AL+R+GRCVEI+E+YPGL R  +  HLAH++L   AA+G+P A+ + D+LR +YN   P GS  +PPL EW+G+   CD   CR
Sbjct:   37 QLKEAATEVELYQFVAQSFRAFEQTVHETASINSAKAGDHLCEAAADGRSDTLLRSDHVLLPGEVANAMGTVSASGNFLDFEPLEEAVDRPSVRGGIGSLQVNSTLVFKKAAKGDLHGALKRIGRCVEIFERYPGLCRSMIGCHLAHMMLVSLAAIGTPRAQAMHDRLRESYNSCCPSGSRLIPPLEEWRGLDAFCDDLYCR 238          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D8LCW5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCW5_ECTSI)

HSP 1 Score: 153 bits (387), Expect = 1.020e-39
Identity = 91/236 (38.56%), Postives = 119/236 (50.42%), Query Frame = 2
Query:   14 VQRDKPPQAHAHTSLVVQIGKAATEAEIFRFVYGFHRAIEQDAYIAKTGLGATGLERNADVSSQAIHSQPPSSDPTQAEFT-------------KVKRIEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVF 682
            VQ + PP          Q+   ATEAE++++V    RA E+  Y   T   A G     D+     H +P    P+  +F                  I FE LE AVDRPSIRGGIG L+IN  LV EK  KG+    LER+GRC+E+ E+YPGL R  +  H+ H++L    A G   AR ++D++R A+N   P G   VPP  EW GV   CD   CRA+E    SG +  F
Sbjct:  194 VQENNPPP---------QLSVVATEAELYQYVAQSCRAFERAVYTTATEQSARG----GDMCDSESHGRPDGVRPSPQDFMAGDLSNAMGVLLENGSCIHFEPLEEAVDRPSIRGGIGALLINGILVFEKAAKGDLRATLERIGRCIEVLERYPGLCRCMIGCHMTHMMLICLVAAGDSSARAMYDRVRGAFNSHRPSGYLPVPPFEEWCGVDAFCDHRCCRAIEGLVKSGNMRAF 416          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: A0A6H5JYW4_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYW4_9PHAE)

HSP 1 Score: 149 bits (376), Expect = 1.140e-37
Identity = 88/221 (39.82%), Postives = 122/221 (55.20%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVY----GFHRAIEQDAYIAKTGLGATGLERNADVSSQAIHSQPPSSDPTQAEFTKV--------KRIEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVFPSP 691
            Q+   A E E++++V      F +A +Q AY+       T  E  A+   ++  ++ P+S     E ++           + FE LE AVDRPSIRGGIG L+IN  LV EK  KG+    LER+GRCVE++E YPG+ R  +A H AH++L   AA+G   AR ++D+LR +YN   P  S  VPP  EWQG+   CD   CRAME    S  +  F +P
Sbjct:  320 QVADVAAEGELYKYVAHSFKAFEQAFQQKAYMQSARDVDTPGE--AEGHGESDRNRWPASAFLPGEISEAMGTVFGDRNLLVFEPLEEAVDRPSIRGGIGSLLINGTLVFEKAAKGDRQATLERIGRCVEVFELYPGMCRCTIAHHKAHVMLVCLAAIGDSSARAMYDRLRGSYNSFRPSVSRPVPPWEEWQGLGAFCDDFYCRAMEGLVASDLMKAFSAP 538          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: A0A6H5JZG3_9PHAE (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZG3_9PHAE)

HSP 1 Score: 147 bits (371), Expect = 5.860e-37
Identity = 83/214 (38.79%), Postives = 118/214 (55.14%), Query Frame = 2
Query:   32 PQAHAHTSLVVQIGKAATEAEIFRFVYGFHRAIEQ----DAYIAKTGLGATGLERNADVSSQA---IHSQPPSSDPTQAEFTKVKRIEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEF 652
            P   + +SL  Q+  AA+E E++ F+   +R  EQ     AY+  +  G    E  A + +     +     +   T A        +FE LE A DRP IR GIGGLIIN  LV EK  KG+   A+ER+ RCVE++E +PG+ R  + SH+AH++++  AA+G+   R ++D+LR AYN      SS +PP  EWQGV+  CD   CR ME 
Sbjct:  267 PSISSFSSLAAQLRTAASETELYAFMMQAYRQFEQAVYRTAYLESSDAGGLPSENEAGIRTACSCRVREASMAVVDTMASRINNHSCDFERLEDAADRPLIRQGIGGLIINGTLVFEKAAKGDFSGAVERIDRCVEVFETFPGVCRFFMGSHVAHIMVTALAAIGNSRTRGMYDRLRRAYNSTRFPDSSPIPPFEEWQGVSSFCDTFYCRTMEL 480          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: A0A6H5JUG6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUG6_9PHAE)

HSP 1 Score: 143 bits (360), Expect = 1.460e-35
Identity = 90/239 (37.66%), Postives = 129/239 (53.97%), Query Frame = 2
Query:   74 KAATEAEIFRFVYGFHRAIE------------------QDAYIAKTGLGATGLERNADVSSQAIHSQPPSSDPTQAEFTKVKRIEFECL---EWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVFPSPLPSEAAVSSRAE 727
            + ATEA I R++  +HRAIE                   DA   + G  A G +    V      S+ P S     +  +  +++F  L   E AV+RP IR G+GGLIIN  L   K + G+   ALERL RCVE++E +PGL R  + +H+AH++LS+AA++G      ++++LRNA NL  P+GS A PPL EWQG++  CD   CR++E      KV + P+  P E   + R E
Sbjct:  262 EVATEAHICRYIMQYHRAIEISIQQALRTPEDTPYVGADDAQYTEDGA-AKGSKAGDRVGGICSLSRNPHSRELICDVVEGIQLQFPGLAHLEDAVERPDIRPGVGGLIINGTLFFNKTVSGDNKGALERLERCVEVFEGFPGLTRFAMGNHMAHVMLSVAASVGDSRDGGLYNRLRNACNLTRPQGSLAFPPLEEWQGISAFCDNVPCRSIEALFARRKVDLPPT-APLEDIKTLRPE 498          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D7FH82_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH82_ECTSI)

HSP 1 Score: 140 bits (353), Expect = 4.480e-35
Identity = 79/202 (39.11%), Postives = 111/202 (54.95%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVYGFHRAIEQ----DAYIAKTGLGATGLERNADVS--SQAIHSQPPSSDPTQAEFTKVKRIEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEF 652
            Q+  AA+E E++ F+   +R  EQ     AY+  +  G    E  A +   S  +     +   T A        +FE LE   DRP IR GIGGLIIN  LV EK  KG+   A+ER+ RCVE++E +PG+ R  + SH+AH++++  A +G   AR ++D+LR AYN      S+ +PP  EWQGV+  CD   CR ME 
Sbjct:  199 QLKAAASETELYAFMMQAYREFEQAVYRTAYLESSDAGGLPSENEAGIRTCSSRVREASMAVVDTMASRISNHSCDFERLEDVADRPLIRQGIGGLIINGTLVFEKAAKGDFTGAVERIDRCVEVFEGFPGVCRFFMGSHVAHIMMTALAVIGDSRARGMYDRLRRAYNSTRLPDSTPIPPFEEWQGVSSFCDTFYCRTMEL 400          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D8LCU9_ECTSI (Zn(2)-C6 fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCU9_ECTSI)

HSP 1 Score: 132 bits (333), Expect = 7.830e-32
Identity = 82/224 (36.61%), Postives = 119/224 (53.12%), Query Frame = 2
Query:   53 SLVVQIGKAATEAEIFRFVYGFHRAIEQDAY---IAKTGLGATGLERNADVSSQAIHSQPPSSDPTQAEFTKVKR--------IEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGSGKVAVFPSP 691
            +L  Q+ +AATEAE++R+V     A E+  Y   I ++  G  GL  +++   +     P   D T ++F+K  +        I+F  L+ AVDR SIR GIG L I+   + E   KG+ H   ER+GRC+E+ E+YPGL R  +  H+ H+LL   AA G    R ++D+LR   N   P GS  VP   EW+GV   CD+  CR++E     G +  F  P
Sbjct:  257 NLPPQLNEAATEAELYRYVSRSCVAFEEAIYTTMIEQSESGGNGL-CDSEPHGRPGGVLPLPEDFTASDFSKALKSLLDDGDGIDFGPLQEAVDRSSIRRGIGVLFIDGPCIVETAAKGDLHATRERMGRCIEVLERYPGLCRCMIGCHMTHVLLMCLAAAGDSSDRAVYDRLRVISNSFRPPGSQPVPSFVEWRGVGAFCDEIFCRSIEVLVPCGHMRPFLEP 479          
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Match: D7FMR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMR8_ECTSI)

HSP 1 Score: 125 bits (313), Expect = 5.720e-30
Identity = 76/208 (36.54%), Postives = 111/208 (53.37%), Query Frame = 2
Query:   65 QIGKAATEAEIFRFVYGFHRAIEQDAYIAKTGLGATGLERNADVSSQAIHSQ--------PPSSDPTQAEFTKVKR--IEFECLEWAVDRPSIRGGIGGLIINSALVPEKMLKGNPHEALERLGRCVEIWEQYPGLFRMNLA-SHLAHLLLSIAAAMGSPVAREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFN 655
            +I +A  + E++R+V    +  +Q AY AK    +    R +D   +A   +        P   D   A  T ++   IEF+ LE   +RP IR G+GGLIIN  LV E+  KG+    LER+  CVE++E+YPGL R  +   H+AH +L+  AA+    AR ++D+LR  YN+  P     VP L +WQG+  ICD   CR +  N
Sbjct:  185 RICEAVNDGELYRYVTQSFKVFQQVAY-AKACAKSASRRRLSDDQCRAEGGEGVSAKDCGPLEDDVLDAMATGLRGYVIEFDQLEETANRPRIRAGVGGLIINGTLVFERAAKGDAEGTLERIRHCVEVFERYPGLCRCTMRWCHIAHAMLAALAAVNGSQARRLYDRLRVVYNVSRPPELRPVPALEDWQGIPSICDDFLCRCIWKN 391          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12268.1876.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 23
Match NameE-valueIdentityDescription
D8LU06_ECTSI5.390e-4441.55Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LU08_ECTSI3.580e-4239.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KED9_9PHAE6.110e-4242.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCW5_ECTSI1.020e-3938.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JYW4_9PHAE1.140e-3739.82Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JZG3_9PHAE5.860e-3738.79Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
A0A6H5JUG6_9PHAE1.460e-3537.66Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH82_ECTSI4.480e-3539.11Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LCU9_ECTSI7.830e-3236.61Zn(2)-C6 fungal-type domain-containing protein n=1... [more]
D7FMR8_ECTSI5.720e-3036.54Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12268contigL-elsbetiae_contig12268:372..2217 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size749
Cds size378
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.9121013-UTR-L-elsbetiae_contig12268:371..3781622815424.9121013-UTR-L-elsbetiae_contig12268:371..378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 372..378 -
1691682891.5015283-UTR-L-elsbetiae_contig12268:371..3781691682891.5015283-UTR-L-elsbetiae_contig12268:371..378Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 372..378 -
1622815424.9577043-UTR-L-elsbetiae_contig12268:1384..14031622815424.9577043-UTR-L-elsbetiae_contig12268:1384..1403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1385..1403 -
1691682891.5354092-UTR-L-elsbetiae_contig12268:1384..14031691682891.5354092-UTR-L-elsbetiae_contig12268:1384..1403Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1385..1403 -
1622815424.9684014-UTR-L-elsbetiae_contig12268:1691..17331622815424.9684014-UTR-L-elsbetiae_contig12268:1691..1733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1692..1733 -
1691682891.5447202-UTR-L-elsbetiae_contig12268:1691..17331691682891.5447202-UTR-L-elsbetiae_contig12268:1691..1733Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1692..1733 -
1622815424.9829948-UTR-L-elsbetiae_contig12268:1914..22171622815424.9829948-UTR-L-elsbetiae_contig12268:1914..2217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1915..2217 -
1691682891.5539768-UTR-L-elsbetiae_contig12268:1914..22171691682891.5539768-UTR-L-elsbetiae_contig12268:1914..2217Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12268 1915..2217 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.9252024-CDS-L-elsbetiae_contig12268:378..4811622815424.9252024-CDS-L-elsbetiae_contig12268:378..481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 379..481 -
1691682891.5100996-CDS-L-elsbetiae_contig12268:378..4811691682891.5100996-CDS-L-elsbetiae_contig12268:378..481Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 379..481 -
1622815424.9354076-CDS-L-elsbetiae_contig12268:729..9091622815424.9354076-CDS-L-elsbetiae_contig12268:729..909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 730..909 -
1691682891.5182252-CDS-L-elsbetiae_contig12268:729..9091691682891.5182252-CDS-L-elsbetiae_contig12268:729..909Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 730..909 -
1622815424.9440966-CDS-L-elsbetiae_contig12268:1289..13841622815424.9440966-CDS-L-elsbetiae_contig12268:1289..1384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 1290..1384 -
1691682891.5269756-CDS-L-elsbetiae_contig12268:1289..13841691682891.5269756-CDS-L-elsbetiae_contig12268:1289..1384Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12268 1290..1384 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12268.1876.1prot_L-elsbetiae_contig12268.1876.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12268 379..1384 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12268.1876.1

>prot_L-elsbetiae_contig12268.1876.1 ID=prot_L-elsbetiae_contig12268.1876.1|Name=mRNA_L-elsbetiae_contig12268.1876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
MLKGNPHEALERLGRCVEIWEQYPGLFRMNLASHLAHLLLSIAAAMGSPV
AREIFDKLRNAYNLMVPRGSSAVPPLGEWQGVAVICDKAACRAMEFNNGS
GKVAVFPSPLPSEAAVSSRAECSRP*
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mRNA from alignment at L-elsbetiae_contig12268:372..2217-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12268.1876.1 ID=mRNA_L-elsbetiae_contig12268.1876.1|Name=mRNA_L-elsbetiae_contig12268.1876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1846bp|location=Sequence derived from alignment at L-elsbetiae_contig12268:372..2217- (Laminarionema elsbetiae ELsaHSoW15)
ACGGCATGCATTTGTTCAGCGAGATAAACCTCCCCAAGCACATGCACACA CGTCACTCGTGGTTCAGATTGGCAAAGCTGCAACGGAAGCCGAGATTTTT CGGTTTGTATATGGATTCCACCGGGCGATAGAACAAGACGCCTACATAGC CAAGACCGGGCTGGGGGCGACAGGCCTCGAGCGTAACGCCGACGTTTCTT CGCAGGCGATTCACTCCCAACCCCCCTCTTCAGATCCCACTCAAGCAGAG TTCACGAAAGTGAAACGGATCGAGTTTGAGTGCCTGGAATGGGCAGTGGA CAGGTGTGAAGATCGTCTTGGCATCTTCAGGCTCTGTTGCAGGAAGGGGT GGTAGTATATGGGATACTAGTACGGGAGCTCAGAAGCGAGCACCTGGATC CCCTATGACCGTTCAGCACATCATGCTCCCGCTTTGGCTTCACCTTGCTT GTCGCCCCCTTCACGCGTGCCGTGGAATGAACAGGCCGAGCATCCGGGGA GGAATCGGCGGCTTGATCATAAACTCGTGAGTGAGCCAAAGCACCGTGCA CCTCTGAAGCACCGCATGGGTGTCAGGCGGGTATTACTTGAGAGTTGAAT GGTAATTCCGCCTGAGAGAACTCCGGCCTGAACACTACCGTAGTGTTTTT GATGAGGTGGCAACACGAGCTTTTACCGATTACCACTACTGTTGAAGTGT TCGGCGCCTTGTTGTCGTTGCTTGATTCCAACGGCGGTTGGTCGATCCCG CGGCAATCTCGCATTGATGATATTAACGCACCCCACTACCGACCGACAAT TTCGATCTTGACAGGGCGCTCGTACCTGAGAAGATGCTCAAGGGAAATCC ACACGAAGCTCTCGAGCGGCTAGGCCGTTGTGTCGAGATCTGGGAGCAAT ATCCTGGGCTGTTCAGGATGAACTTGGCGTGAGTCAAGCCAAATATGCAG TTATCCATGAACACGCAGGTTTTGGGCCCAATTGCTTGTACAAACTCTTT CCCTCATCGAAATGTGTTTGTGGTGCCTGGTGCGTTGGAGCCGCTGATGG CTGTTTGTCTGGACTGCCCACTACATAAAAACGACCTCCTGACATCGCCC GCCCCGCTTGTTGGTCTTCACGGGTGTCGCTTGTGGAACCTCGTATCATT TTAGGCACACACCTCATGTTACCTTCTACCTGTGGATATATGGCACGCAT CTGGCAATCGCTTGGCCTTGAATCTTGGTGTACTTCCCGAATCGCCACGA GTGCTTCCTTCCGCACAGCCATCTGACACGAAATTTCGATGTAAACTGTC CTTGGAAGGTCGCACTTGGCACACCTCCTGCTCTCAATCGCTGCAGCTAT GGGCAGTCCCGTCGCTCGAGAGATTTTCGACAAGTTGAGGAACGCCTACA ACCTCATGGTGCCTCGTGGATCAAGCGCGGTGCCACCTTTGGGCGAGTGG CAAGGTGTCGCTGTAATCTGCGACAAAGCCGCATGCAGGTGGGTTCCCAT AGGGTTGACGATATTTCGCTGCGAAACGCCGACTTTGGGCGGGCTCCGCT CTCGCCATGACGTCAACAAAAGTAGATTATCTGTCTGCCAGCCATACCGT TACGCGGTTGTATCTGTCACTTGCCCACCTCCCGGTCACCACGTCGGGGA TCAGGAGACTTCTTGCCTGGCCTCTTGCATGTTGTACCGATTATCTCTTA TCGCCACGCGGTCGCCCAACCATTCTCGTTTTGCAGGGCAATGGAATTCA ACAATGGGAGCGGGAAAGTGGCGGTCTTTCCGTCTCCACTACCCAGCGAG GCCGCAGTTTCGTCAAGGGCAGAATGCTCGCGGCCTTGATAGCCAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12268:372..2217-

>mRNA_L-elsbetiae_contig12268.1876.1 ID=mRNA_L-elsbetiae_contig12268.1876.1|Name=mRNA_L-elsbetiae_contig12268.1876.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig12268:372..2217- (Laminarionema elsbetiae ELsaHSoW15)
ATGCTCAAGGGAAATCCACACGAAGCTCTCGAGCGGCTAGGCCGTTGTGT
CGAGATCTGGGAGCAATATCCTGGGCTGTTCAGGATGAACTTGGCATGCT
CAAGGGAAATCCACACGAAGCTCTCGAGCGGCTAGGCCGTTGTGTCGAGA
TCTGGGAGCAATATCCTGGGCTGTTCAGGATGAACTTGGCGTCGCACTTG
GCACACCTCCTGCTCTCAATCGCTGCAGCTATGGGCAGTCCCGTCGCTCG
AGAGATTTTCGACAAGTTGAGGAACGCCTACAACCTCATGGTGCCTCGTG
GATCAAGCGCGGTGCCACCTTTGGGCGAGTGGCAAGGTGTCGCTGTAATC
TGCGACAAAGCCGCATGCAGGTCGCACTTGGCACACCTCCTGCTCTCAAT
CGCTGCAGCTATGGGCAGTCCCGTCGCTCGAGAGATTTTCGACAAGTTGA
GGAACGCCTACAACCTCATGGTGCCTCGTGGATCAAGCGCGGTGCCACCT
TTGGGCGAGTGGCAAGGTGTCGCTGTAATCTGCGACAAAGCCGCATGCAG
GGCAATGGAATTCAACAATGGGAGCGGGAAAGTGGCGGTCTTTCCGTCTC
CACTACCCAGCGAGGCCGCAGTTTCGTCAAGGGCAGAATGCTCGCGGCCT
TGAGGCAATGGAATTCAACAATGGGAGCGGGAAAGTGGCGGTCTTTCCGT
CTCCACTACCCAGCGAGGCCGCAGTTTCGTCAAGGGCAGAATGCTCGCGG
CCTTGA
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