mRNA_L-elsbetiae_contig12260.1873.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12260.1873.1
Unique NamemRNA_L-elsbetiae_contig12260.1873.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12260.1873.1 vs. uniprot
Match: D8LSJ5_ECTSI (Erf4 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSJ5_ECTSI)

HSP 1 Score: 216 bits (551), Expect = 7.630e-65
Identity = 103/150 (68.67%), Postives = 118/150 (78.67%), Query Frame = 2 
Query:   56 MATIQGQDPGSSGVIRLEPTGMKLGATGISSSYDEGYPPELEGWMAREEWLECMKRINRRAWHTYSRDGGALMDRFPCGMCRLQTYCCCPCTLGLSLLSVRRQAKEVERGVGEVIASVNQNLEARRRDVRFGFRRGWCHAWVQVEYGPAI 505
            MA IQ  + G  GVIRLEP G+KLGATGISS+YD+ YPPEL+GWM  EEW EC+ RINR           ALMDRFPCG+CRLQ YC CPCTLGLSLLS+R++AKE+ERGVGEV+ +VNQNLEARRR VRFGF R +C AWVQVEYG  +
Sbjct:    1 MAAIQEHEAGVLGVIRLEPIGIKLGATGISSAYDDQYPPELDGWMTTEEWFECIGRINR-----------ALMDRFPCGLCRLQAYCFCPCTLGLSLLSMRKEAKEIERGVGEVVKTVNQNLEARRRSVRFGFHRTFCSAWVQVEYGSKV 139
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BLAST of mRNA_L-elsbetiae_contig12260.1873.1 vs. uniprot
Match: A0A225VIN1_9STRA (Golgin subfamily A protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VIN1_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 4.110e-11
Identity = 39/134 (29.10%), Postives = 67/134 (50.00%), Query Frame = 2 
Query:   92 GVIRLEPTGMKLGATGISSSYDEGYPPELEGWMAREEWLECMKRINRRAWHTYSRDGGALMDRFPCGMCRLQTYCCCPCTLGLSLLSVRRQAKEVERGVGEVIASVNQNLEARRRDVRFGFRRGWCHAWVQVEY 493
            G +RL PT M+   TG++ +Y++ +P EL   +   ++   + +IN             + D +PC +C L  Y CCPCTLGLSL       ++ E+ V  ++  +N+ +   R  V +   R    +W+Q+ Y
Sbjct:   28 GEVRLYPTRMRF-VTGVARAYEDDFPFELSHLVKETDFEIAINQINN-----------TMQDYWPCFLCILCGYGCCPCTLGLSLFCPNFCIRDAEQYVRALLTRINKRVCFERAGVEWQLERSCGKSWIQIAY 149
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12260.1873.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSJ5_ECTSI7.630e-6568.67Erf4 domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A225VIN1_9STRA4.110e-1129.10Golgin subfamily A protein n=1 Tax=Phytophthora me... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12260contigL-elsbetiae_contig12260:1225..4397 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score76.3
Seed ortholog evalue2.2e-11
Seed eggNOG ortholog4792.ETI46872
Hectar predicted targeting categoryother localisation
EggNOG OGs2C81U@1,2S33K@2759,3QFN2@4776
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons4
Model size1289
Cds size714
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12260.1873.1prot_L-elsbetiae_contig12260.1873.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12260 1280..3877 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.4875667-UTR-L-elsbetiae_contig12260:1224..12791622815424.4875667-UTR-L-elsbetiae_contig12260:1224..1279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12260 1225..1279 +
1691682891.3094652-UTR-L-elsbetiae_contig12260:1224..12791691682891.3094652-UTR-L-elsbetiae_contig12260:1224..1279Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12260 1225..1279 +
1622815424.7036426-UTR-L-elsbetiae_contig12260:3877..43971622815424.7036426-UTR-L-elsbetiae_contig12260:3877..4397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12260 3878..4397 +
1691682891.3662186-UTR-L-elsbetiae_contig12260:3877..43971691682891.3662186-UTR-L-elsbetiae_contig12260:3877..4397Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12260 3878..4397 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815424.5607426-CDS-L-elsbetiae_contig12260:1279..13611622815424.5607426-CDS-L-elsbetiae_contig12260:1279..1361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 1280..1361 +
1691682891.3244448-CDS-L-elsbetiae_contig12260:1279..13611691682891.3244448-CDS-L-elsbetiae_contig12260:1279..1361Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 1280..1361 +
1622815424.5740151-CDS-L-elsbetiae_contig12260:2588..27151622815424.5740151-CDS-L-elsbetiae_contig12260:2588..2715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 2589..2715 +
1691682891.3359787-CDS-L-elsbetiae_contig12260:2588..27151691682891.3359787-CDS-L-elsbetiae_contig12260:2588..2715Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 2589..2715 +
1622815424.611097-CDS-L-elsbetiae_contig12260:3104..32231622815424.611097-CDS-L-elsbetiae_contig12260:3104..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 3105..3223 +
1691682891.3473854-CDS-L-elsbetiae_contig12260:3104..32231691682891.3473854-CDS-L-elsbetiae_contig12260:3104..3223Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 3105..3223 +
1622815424.6213057-CDS-L-elsbetiae_contig12260:3491..38771622815424.6213057-CDS-L-elsbetiae_contig12260:3491..3877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 3492..3877 +
1691682891.3567898-CDS-L-elsbetiae_contig12260:3491..38771691682891.3567898-CDS-L-elsbetiae_contig12260:3491..3877Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12260 3492..3877 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12260.1873.1

>prot_L-elsbetiae_contig12260.1873.1 ID=prot_L-elsbetiae_contig12260.1873.1|Name=mRNA_L-elsbetiae_contig12260.1873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=238bp
MATIQGQDPGSSGVIRLEPTGMKLGATGISSSYDEGYPPELEGWMAREEW
LECMKRINRRAWHTYSRDGGALMDRFPCGMCRLQTYCCCPCTLGLSLLSV
RRQAKEVERGVGEVIASVNQNLEARRRDVRFGFRRGWCHAWVQVEYGPAI
STSSSTAPKAPVSSSAAAPLLTGASGNRHNLESGRFREQTENDGFQDRRK
KATTTVAAMSGATQPLDGALLERDCSAAASPLGGIAV*
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mRNA from alignment at L-elsbetiae_contig12260:1225..4397+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12260.1873.1 ID=mRNA_L-elsbetiae_contig12260.1873.1|Name=mRNA_L-elsbetiae_contig12260.1873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3173bp|location=Sequence derived from alignment at L-elsbetiae_contig12260:1225..4397+ (Laminarionema elsbetiae ELsaHSoW15)
AAACAGCAGACCCCCGCGGGGCTCGATCGAGGCAGACAGCAGGCAGAGCA
AGAGCATGGCCACCATCCAGGGACAGGATCCAGGAAGCTCAGGAGTGATT
CGCTTAGAGCCCACCGGAATGAAGCTCGGCGCAACAGGTGATGAAATATC
TTCTTTGAAGGATGAATCAGAATTGTTCCACCTTCGTTACGCAATACACC
AGCACCCCCCCAAAACGCTCTGGGCCCTCCTTGTGCCCTCTCCGTGGAGA
TAGGGGACTTGCTTGGTGTCGATAGGAACAAGCTGGGAGATCTCTCAGCG
TTTGTTCGGGCGTTGCCACCATTCTCGTCACGGAGGTTGAATGTGCCGTT
CGTATTCGACACAAGGGGGGGTGGTATTTTCCGTCAGTTCGCTCGGCCGA
CTCTCTCATGTGCAGTTCGTCCAGAATATTGCCATTGTAGCAGAAGTATC
ACACTGCAGTAGCGCTAGTGTCACACAATGAGTGCTTGCTTGAGCTGGGG
AGGTCCTATTGCTGCCGTGGCCTAAAGTGACAGTTGTGGCAACCAGCGTC
ACCCACCGGGGGCTTCTAGATACATTGGTCAAGAGTATCTGTGTTGAGAT
CCCACCACACTACCCGCCCCACTTGCCATGTACATGCCCTTTCAATGTCG
AGTCGGCCTACGGGAGGAGTAGTCGACCTCCCACCTACTTCCCTTTCATC
TCATTTAGCACACCATACATGCGCTCGACACGTATTGCCCGTTCTTGGTA
CCACCCAACACTCCGACCACCGTAATGTATGTCCACCAGGGTTGCCGTTC
TCCCTAGTACATACAATGTGTTCCGGGCGGTTATATTTGAAGGCCGAGGA
ATGCACAATACAATTATTCCCTGTGCCTCAAGTGTCCGTGCAAAACGGTT
TGGCCCTTTCACATTCATCCCGGAGACTTACTCTCACGATCCAAGCCGCA
GACGGGCCATGCAAAGTGCGTGTTGCCAAACACGGCCTGCACTGGGATGG
CCTTGCTATTGGCCCAGGCAGAGGTGTAGGTGGTATCCGACACCGCTCTC
GTCTCCCCAGCTCATCGGTTGTAGCGGCCATAGCCCAGACAAAGCCCGCT
GTTCACGCAGTGACTCCCAATCAACTTCCTTGCCAGAGGTCGATTGCTGT
GTCCGTCGCAGGGGCTTAAATTAGGCCCTGATCTCTGGCACGTAGATATC
GATCACCACCTAATATCGTCTCTTAGTTTGAGAGGCTTCACGCTCGATCG
TATGCACAGCGCTCATCATCCACCCACGCTGCCGTACCCCCTTTTCGTTC
TCGTTTGCATATACCACGCGTGCGCGCAACACATGTGCCGCCGACGAAAT
ACTCAACGGCGCAGGGATTTCCAGCTCGTACGATGAAGGATATCCCCCTG
AACTGGAGGGCTGGATGGCCAGGGAAGAGTGGCTCGAGTGCATGAAACGA
ATAAACAGGCGAGCCTGGCACACCTACAGCAGAGACGGGGGGTTGTTCCC
GTTGGAGATGCAACGGGTCTGATGGATGAAGCGTTTTAGCTGTGTGAAGT
CCTACATTCGTGGACTGCTGTTCGAAGACTTCCGTGTGTATCTGTTCCCT
TCAACAAGTAGATAGCAGATGTTGCTTTTACTACGTATAGCGGTGATGCG
CTCGGCAGTAACATTTTGGCCCACAAATTAAACCGGCAGCTTTCAGGGGC
ACCAGTGCGCCAACCCCTTCGTCAAGCACCCCAGCCTCTGTCACGTTTCG
CTGCGATTTCAGCACTTGATTTTCTCCGGGGTGCGCCTTTTGGGTAACCG
GTCCTGTGTGGTAGGTAGGCACGCTTTTGTAGAGTCCGTGTTAAGCGCTC
CTATGCACGCTTTCCCCCCGTTTCCAACAGTGCACTCATGGATCGATTCC
CGTGTGGAATGTGCCGCCTCCAAACGTACTGCTGCTGTCCCTGCACGTTG
GGTCTTTCTCTCCTGAGCGTGAGAAGGCAGGCCAAGGAGGTCGAGCGAGG
TGAGGGGATGCGCAAACCTCAGCAGCGTAGGTAGTGCGTGTGGGAATGGC
GGGGCGGGGCGGAGCGGAGCGGAGCGTAGCCTTGTTTGGTGTATTGTACC
AACGCCGGAGCGAGAGTGTGACGCGTGGGTGGGTCTGATCTCCAGGCCCT
CCATTGGGACCCTCATACTTTGGTTCCCCCGCGTGCGCCCCACCACAAGC
AAACACAAAGGCGGCCAACGTGCGTAAACGCTTGATTGACACGTCGTGTA
AAACCAACCCCGACCAGGAGTGGGCGAGGTGATTGCCTCGGTCAACCAAA
ACCTCGAGGCCAGGAGAAGAGACGTGCGCTTCGGCTTCCGTCGGGGGTGG
TGCCACGCCTGGGTGCAGGTGGAGTACGGCCCGGCGATCTCGACCTCGTC
GTCGACGGCACCGAAGGCACCGGTATCCTCGTCGGCGGCAGCACCCTTGT
TGACTGGTGCCAGTGGCAACAGGCACAACCTAGAGAGCGGCCGCTTCCGT
GAGCAAACCGAGAACGACGGCTTCCAAGACCGGCGGAAAAAAGCGACCAC
GACCGTAGCGGCGATGAGCGGGGCCACCCAGCCCCTAGATGGGGCGCTGT
TGGAGCGTGATTGTTCAGCAGCGGCTTCCCCCCTCGGCGGTATAGCGGTG
TGAGAGGGAAAACCCCGTGTGTGTGGTGGATAAAGTAGGTACCTAGCCAT
TCGTGGCGGTGGTGGGAAAATGTAGCGGTTGGACGGGCCGAAAGGTCTCG
TGTTTGTATCTATGTTTTGTGTCTCCCGTGGTGGATCGCTGTTTTGCGTA
GAGAACAAACATGCAAAACAAGAGGTAACCCCGTCCCTGAGTGAGGTTTG
ACGCTTGGGGAAAAAGCGCCGTGCAAAGCCAGGCCAAGTCGATAGTGGCA
GCCACAAAACGGTGATAGCAAAACCTCTCCCATTCGGTCCTCCATCATTT
TGTGGAAAAAAAGGTAACTTTCTCGTTGGGATTGGGGGTAAGGCGGTTTT
ATTTTGTGGTGATTGTATACGTTGTGAGCAGTGAAGGCCGTACGTGTTTG
TGTAGCCGTTTGGCGGCGGGTGACGTGAGTGTATCGTGTATTTATCGATG
TAGTGTTTGGTGGATGTTCCTACAACTAACAGATAAATTTCATGTGGTGC
ATTCACTAAATAGCAAAATAGGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12260:1225..4397+

>mRNA_L-elsbetiae_contig12260.1873.1 ID=mRNA_L-elsbetiae_contig12260.1873.1|Name=mRNA_L-elsbetiae_contig12260.1873.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1428bp|location=Sequence derived from alignment at L-elsbetiae_contig12260:1225..4397+ (Laminarionema elsbetiae ELsaHSoW15)
ATGGCCACCATCCAGGGACAGGATCCAGGAAGCTCAGGAGTGATTCGCTT
AGAGCCCACCGGAATGAAGCTCGGCGCAACAGATGGCCACCATCCAGGGA
CAGGATCCAGGAAGCTCAGGAGTGATTCGCTTAGAGCCCACCGGAATGAA
GCTCGGCGCAACAGGGATTTCCAGCTCGTACGATGAAGGATATCCCCCTG
AACTGGAGGGCTGGATGGCCAGGGAAGAGTGGCTCGAGTGCATGAAACGA
ATAAACAGGCGAGCCTGGCACACCTACAGCAGAGACGGGGGGGATTTCCA
GCTCGTACGATGAAGGATATCCCCCTGAACTGGAGGGCTGGATGGCCAGG
GAAGAGTGGCTCGAGTGCATGAAACGAATAAACAGGCGAGCCTGGCACAC
CTACAGCAGAGACGGGGGTGCACTCATGGATCGATTCCCGTGTGGAATGT
GCCGCCTCCAAACGTACTGCTGCTGTCCCTGCACGTTGGGTCTTTCTCTC
CTGAGCGTGAGAAGGCAGGCCAAGGAGGTCGAGCGAGTGCACTCATGGAT
CGATTCCCGTGTGGAATGTGCCGCCTCCAAACGTACTGCTGCTGTCCCTG
CACGTTGGGTCTTTCTCTCCTGAGCGTGAGAAGGCAGGCCAAGGAGGTCG
AGCGAGGAGTGGGCGAGGTGATTGCCTCGGTCAACCAAAACCTCGAGGCC
AGGAGAAGAGACGTGCGCTTCGGCTTCCGTCGGGGGTGGTGCCACGCCTG
GGTGCAGGTGGAGTACGGCCCGGCGATCTCGACCTCGTCGTCGACGGCAC
CGAAGGCACCGGTATCCTCGTCGGCGGCAGCACCCTTGTTGACTGGTGCC
AGTGGCAACAGGCACAACCTAGAGAGCGGCCGCTTCCGTGAGCAAACCGA
GAACGACGGCTTCCAAGACCGGCGGAAAAAAGCGACCACGACCGTAGCGG
CGATGAGCGGGGCCACCCAGCCCCTAGATGGGGCGCTGTTGGAGCGTGAT
TGTTCAGCAGCGGCTTCCCCCCTCGGCGGTATAGCGGTGTGAGAGTGGGC
GAGGTGATTGCCTCGGTCAACCAAAACCTCGAGGCCAGGAGAAGAGACGT
GCGCTTCGGCTTCCGTCGGGGGTGGTGCCACGCCTGGGTGCAGGTGGAGT
ACGGCCCGGCGATCTCGACCTCGTCGTCGACGGCACCGAAGGCACCGGTA
TCCTCGTCGGCGGCAGCACCCTTGTTGACTGGTGCCAGTGGCAACAGGCA
CAACCTAGAGAGCGGCCGCTTCCGTGAGCAAACCGAGAACGACGGCTTCC
AAGACCGGCGGAAAAAAGCGACCACGACCGTAGCGGCGATGAGCGGGGCC
ACCCAGCCCCTAGATGGGGCGCTGTTGGAGCGTGATTGTTCAGCAGCGGC
TTCCCCCCTCGGCGGTATAGCGGTGTGA
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